Wall clock time and date at job start Fri Apr 10 2020 17:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 110.92180 * 2 1 4 4 C 1.54912 * 111.00332 * 236.09989 * 2 1 3 5 5 N 1.47426 * 104.83261 * 204.91674 * 4 2 1 6 6 C 1.34780 * 125.64645 * 203.86243 * 5 4 2 7 7 O 1.21345 * 120.00306 * 0.02562 * 6 5 4 8 8 C 1.49452 * 119.99821 * 179.97438 * 6 5 4 9 9 O 1.21358 * 120.00100 * 0.02562 * 8 6 5 10 10 N 1.34777 * 120.00413 * 179.97438 * 8 6 5 11 11 C 1.46491 * 120.00357 * 180.02562 * 10 8 6 12 12 C 1.53003 * 109.47029 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.47147 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47146 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00001 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99856 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00097 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00181 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46883 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47078 * 119.99625 * 18 16 14 21 21 H 1.48500 * 109.47352 * 240.00059 * 18 16 14 22 22 C 1.47024 * 108.70449 * 24.12870 * 5 4 2 23 23 C 1.54327 * 107.26774 * 358.94057 * 22 5 4 24 24 H 1.09000 * 110.86856 * 96.24526 * 23 22 5 25 25 N 1.46904 * 110.71719 * 219.44185 * 23 22 5 26 26 H 1.09002 * 109.46921 * 182.44378 * 1 2 3 27 27 H 1.09003 * 109.47131 * 302.44898 * 1 2 3 28 28 H 1.09001 * 109.47089 * 62.44456 * 1 2 3 29 29 H 1.09002 * 110.36496 * 86.08089 * 4 2 1 30 30 H 1.08997 * 110.36790 * 323.75724 * 4 2 1 31 31 H 0.97004 * 119.99293 * 0.02562 * 10 8 6 32 32 H 1.09008 * 109.47136 * 299.99821 * 11 10 8 33 33 H 1.09000 * 109.47546 * 60.00326 * 11 10 8 34 34 H 1.08997 * 109.47309 * 299.99642 * 12 11 10 35 35 H 1.08997 * 109.47120 * 60.00152 * 12 11 10 36 36 H 1.09000 * 109.47470 * 300.00111 * 13 12 11 37 37 H 1.09002 * 109.46698 * 59.99737 * 13 12 11 38 38 H 0.97005 * 119.99599 * 180.02562 * 17 16 14 39 39 H 1.08995 * 109.88316 * 118.35549 * 22 5 4 40 40 H 1.09002 * 109.88101 * 239.52444 * 22 5 4 41 41 H 1.00894 * 110.99864 * 293.52193 * 25 23 22 42 42 H 1.00900 * 110.99949 * 57.47984 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2004 5 7 3.4271 -1.2431 -0.7734 6 6 4.4462 -1.5658 -1.5942 7 8 4.2980 -1.5082 -2.7972 8 6 5.7593 -1.9935 -1.0227 9 8 5.9077 -2.0506 0.1804 10 7 6.7783 -2.3167 -1.8434 11 6 8.0652 -2.7364 -1.2832 12 6 9.0411 -3.0427 -2.4211 13 6 10.3854 -3.4805 -1.8360 14 6 11.3465 -3.7828 -2.9567 15 1 11.0303 -3.6732 -3.9836 16 6 12.6294 -4.1993 -2.6711 17 7 13.0143 -4.3332 -1.4207 18 14 13.8206 -4.5747 -4.0602 19 1 13.1475 -4.3477 -5.3644 20 1 15.0034 -3.6833 -3.9525 21 1 14.2579 -5.9909 -3.9682 22 6 3.4674 -1.2742 0.6959 23 6 2.0861 -0.8080 1.2021 24 1 1.4451 -1.6615 1.4229 25 7 2.2291 0.0518 2.3847 26 1 -0.3633 -1.0268 0.0438 27 1 -0.3633 0.5514 0.8672 28 1 -0.3633 0.4754 -0.9111 29 1 2.1560 -0.1719 -2.0837 30 1 1.4518 -1.6703 -1.4025 31 1 6.6596 -2.2713 -2.8051 32 1 8.4699 -1.9363 -0.6634 33 1 7.9229 -3.6301 -0.6757 34 1 8.6367 -3.8426 -3.0413 35 1 9.1834 -2.1488 -3.0282 36 1 10.7898 -2.6804 -1.2160 37 1 10.2434 -4.3743 -1.2285 38 1 13.9171 -4.6259 -1.2198 39 1 3.6650 -2.2894 1.0399 40 1 4.2426 -0.5998 1.0598 41 1 2.5905 -0.4696 3.1692 42 1 2.8110 0.8509 2.1826 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000911215640.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:45 Heat of formation + Delta-G solvation = -107.276970 kcal Electronic energy + Delta-G solvation = -21874.769276 eV Core-core repulsion = 18467.024277 eV Total energy + Delta-G solvation = -3407.744999 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.97908 -40.22360 -39.05273 -37.17386 -35.36693 -34.73716 -33.19717 -33.06366 -29.21927 -28.61986 -27.99596 -25.79692 -24.21664 -22.89523 -22.40857 -21.43301 -20.86981 -18.96135 -18.50647 -18.15036 -17.59242 -17.02186 -16.77520 -16.44747 -16.38330 -16.01695 -15.58847 -15.14941 -14.80156 -14.56484 -14.31900 -14.28192 -13.79832 -13.77215 -13.57221 -13.49629 -13.00000 -12.84848 -12.79784 -12.58240 -12.39407 -12.19659 -11.97937 -11.73440 -11.59837 -11.57318 -11.24067 -10.78039 -10.57169 -10.37310 -9.98931 -9.71494 -8.21352 -6.32188 0.22005 1.11961 1.40599 1.41162 1.54185 2.00105 2.32638 2.41868 3.12651 3.16599 3.38120 3.50081 3.63291 4.02006 4.04359 4.13706 4.14500 4.23111 4.48826 4.52499 4.58333 4.67422 4.77012 4.82751 4.86469 4.88110 4.99840 5.07457 5.11967 5.19544 5.27506 5.44506 5.49641 5.68091 5.82429 5.86716 6.06787 6.16341 6.21780 6.49416 6.54144 6.82005 6.84865 7.37285 8.90765 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.045525 B = 0.002492 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.895100 B =11233.368040 C =11755.146847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.088 4.088 3 H 0.087 0.913 4 C 0.101 3.899 5 N -0.586 5.586 6 C 0.520 3.480 7 O -0.543 6.543 8 C 0.502 3.498 9 O -0.540 6.540 10 N -0.687 5.687 11 C 0.129 3.871 12 C -0.106 4.106 13 C 0.025 3.975 14 C -0.541 4.541 15 H 0.064 0.936 16 C -0.002 4.002 17 N -0.933 5.933 18 Si 0.966 3.034 19 H -0.261 1.261 20 H -0.279 1.279 21 H -0.279 1.279 22 C 0.073 3.927 23 C 0.091 3.909 24 H 0.110 0.890 25 N -0.830 5.830 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.418 0.582 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.066 0.934 36 H -0.003 1.003 37 H -0.003 1.003 38 H 0.264 0.736 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.353 0.647 42 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.389 8.956 4.350 28.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.108 4.108 3 H 0.105 0.895 4 C -0.020 4.020 5 N -0.320 5.320 6 C 0.303 3.697 7 O -0.421 6.421 8 C 0.282 3.718 9 O -0.418 6.418 10 N -0.339 5.339 11 C 0.006 3.994 12 C -0.144 4.144 13 C -0.013 4.013 14 C -0.579 4.579 15 H 0.082 0.918 16 C -0.200 4.200 17 N -0.573 5.573 18 Si 0.790 3.210 19 H -0.185 1.185 20 H -0.205 1.205 21 H -0.205 1.205 22 C -0.052 4.052 23 C -0.022 4.022 24 H 0.128 0.872 25 N -0.360 5.360 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.256 0.744 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.015 0.985 37 H 0.015 0.985 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.167 0.833 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -26.949 8.979 4.598 28.776 hybrid contribution 2.271 -0.623 -0.876 2.513 sum -24.678 8.356 3.721 26.319 Atomic orbital electron populations 1.21605 0.91485 1.02873 1.02843 1.22381 0.97958 0.98811 0.91646 0.89492 1.22735 0.80682 0.99549 0.99037 1.48263 1.12147 1.63258 1.08308 1.19764 0.84758 0.79174 0.86019 1.90752 1.83061 1.53612 1.14705 1.20202 0.85605 0.79161 0.86813 1.90728 1.83257 1.52897 1.14909 1.45883 1.11634 1.64959 1.11409 1.21474 0.81192 0.99769 0.96935 1.21644 0.94642 1.01437 0.96664 1.18934 0.91700 0.95044 0.95580 1.21697 0.97451 1.44887 0.93883 0.91813 1.25990 1.00495 0.95372 0.98149 1.70106 1.19242 1.48231 1.19761 0.85385 0.78442 0.77768 0.79358 1.18486 1.20496 1.20491 1.23365 1.00642 1.02906 0.78327 1.22696 0.92465 0.96329 0.90684 0.87241 1.58930 1.59095 1.11539 1.06410 0.91760 0.91230 0.91622 0.90084 0.89394 0.74439 0.91722 0.91709 0.91486 0.91493 0.98502 0.98507 0.92764 0.91192 0.91301 0.83288 0.83986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.01 9.29 71.98 0.67 -0.34 16 2 C -0.09 -0.96 3.30 -9.40 -0.03 -0.99 16 3 H 0.09 0.99 8.09 -2.39 -0.02 0.97 16 4 C 0.10 1.55 6.37 86.86 0.55 2.10 16 5 N -0.59 -12.49 3.33 -813.35 -2.71 -15.20 16 6 C 0.52 14.31 7.91 87.27 0.69 15.00 16 7 O -0.54 -16.83 16.74 -3.23 -0.05 -16.88 16 8 C 0.50 15.20 7.86 87.27 0.69 15.88 16 9 O -0.54 -17.98 14.12 -3.27 -0.05 -18.02 16 10 N -0.69 -20.62 5.55 -464.40 -2.58 -23.20 16 11 C 0.13 4.44 5.67 86.38 0.49 4.93 16 12 C -0.11 -4.10 5.27 30.60 0.16 -3.94 16 13 C 0.03 1.29 4.97 29.85 0.15 1.44 16 14 C -0.54 -30.20 9.11 25.60 0.23 -29.97 16 15 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 16 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 17 N -0.93 -56.48 13.29 21.45 0.28 -56.19 16 18 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 19 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 22 C 0.07 1.29 5.23 86.73 0.45 1.75 16 23 C 0.09 1.05 3.57 46.10 0.16 1.22 16 24 H 0.11 1.11 8.01 -2.39 -0.02 1.09 16 25 N -0.83 -8.27 9.33 -163.75 -1.53 -9.80 16 26 H 0.06 0.44 8.11 -2.39 -0.02 0.42 16 27 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.08 1.33 8.04 -2.39 -0.02 1.31 16 30 H 0.09 1.17 8.04 -2.39 -0.02 1.15 16 31 H 0.42 11.42 7.94 -92.71 -0.74 10.68 16 32 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 33 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 37 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 38 H 0.26 14.96 8.31 -92.70 -0.77 14.19 16 39 H 0.07 1.41 7.70 -2.39 -0.02 1.39 16 40 H 0.07 1.38 7.38 -2.39 -0.02 1.36 16 41 H 0.35 2.96 9.08 -89.70 -0.81 2.15 16 42 H 0.35 3.28 8.85 -89.69 -0.79 2.48 16 Total: -1.00 -68.11 349.65 -1.22 -69.34 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -1.30 Total: 16.61 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 4.68 Total: 7.41 kcal Atomic # 7 Polarization: -97.86 SS G_CDS: -6.52 Total: -104.39 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: -0.10 Total: -34.91 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -68.11 -1.22 -69.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911215640.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.942 kcal (2) G-P(sol) polarization free energy of solvation -68.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds