Wall clock time and date at job start Fri Apr 10 2020 17:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.56505 * 2 1 4 4 C 1.50446 * 109.56803 * 239.76922 * 2 1 3 5 5 O 1.21280 * 118.49085 * 72.90192 * 4 2 1 6 6 N 1.33381 * 123.01918 * 252.88764 * 4 2 1 7 7 C 1.45647 * 124.59085 * 355.93426 * 6 4 2 8 8 H 1.08999 * 109.22075 * 141.97699 * 7 6 4 9 9 C 1.52998 * 109.21897 * 261.31204 * 7 6 4 10 10 C 1.52805 * 110.87968 * 21.47490 * 7 6 4 11 11 H 1.09000 * 109.82692 * 193.79836 * 10 7 6 12 12 C 1.53002 * 109.52603 * 73.24484 * 10 7 6 13 13 N 1.47048 * 109.57166 * 120.35752 * 2 1 3 14 14 C 1.34773 * 121.35524 * 257.06690 * 13 2 1 15 15 O 1.21587 * 120.00058 * 179.97438 * 14 13 2 16 16 N 1.34776 * 119.99921 * 359.97438 * 14 13 2 17 17 C 1.46503 * 119.99910 * 180.02562 * 16 14 13 18 18 C 1.52996 * 109.47267 * 179.97438 * 17 16 14 19 19 C 1.50695 * 109.47293 * 179.97438 * 18 17 16 20 20 H 1.07992 * 120.00385 * 0.02562 * 19 18 17 21 21 C 1.37881 * 120.00192 * 180.02562 * 19 18 17 22 22 N 1.31520 * 119.99793 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00326 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46820 * 60.00275 * 23 21 19 25 25 H 1.48497 * 109.47001 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46890 * 300.00555 * 23 21 19 27 27 H 1.08997 * 109.47005 * 171.52918 * 1 2 3 28 28 H 1.09002 * 109.47178 * 291.53251 * 1 2 3 29 29 H 1.08996 * 109.47353 * 51.52845 * 1 2 3 30 30 H 0.96998 * 117.70299 * 175.65808 * 6 4 2 31 31 H 1.08998 * 109.47509 * 59.99630 * 9 7 6 32 32 H 1.09003 * 109.47206 * 180.02562 * 9 7 6 33 33 H 1.09003 * 109.47213 * 299.99914 * 9 7 6 34 34 H 1.09001 * 109.47218 * 315.43837 * 12 10 7 35 35 H 1.08997 * 109.47152 * 75.44534 * 12 10 7 36 36 H 1.09000 * 109.46811 * 195.43964 * 12 10 7 37 37 H 0.96999 * 119.99999 * 0.02562 * 16 14 13 38 38 H 1.08995 * 109.47467 * 300.00323 * 17 16 14 39 39 H 1.09006 * 109.47057 * 60.00362 * 17 16 14 40 40 H 1.08995 * 109.47340 * 300.00645 * 18 17 16 41 41 H 1.09006 * 109.46587 * 60.00319 * 18 17 16 42 42 H 0.96999 * 119.99839 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8950 1.0271 0.0000 4 6 2.0338 -0.7137 -1.2248 5 8 1.9323 -0.1608 -2.2994 6 7 2.5873 -1.9265 -1.1831 7 6 2.8518 -2.6732 0.0391 8 1 2.6489 -3.7299 -0.1348 9 6 4.3220 -2.5009 0.4264 10 6 1.9731 -2.1720 1.1844 11 1 2.3451 -2.5598 2.1328 12 6 0.5325 -2.6386 0.9655 13 7 2.0225 -0.7002 1.1955 14 6 2.5002 -0.0227 2.2582 15 8 2.9009 -0.6267 3.2343 16 7 2.5336 1.3245 2.2388 17 6 3.0534 2.0611 3.3936 18 6 2.9808 3.5637 3.1150 19 6 3.5148 4.3213 4.3031 20 1 3.8708 3.7848 5.1701 21 6 3.5490 5.6996 4.2834 22 7 3.1151 6.3530 3.2277 23 14 4.2116 6.6387 5.7559 24 1 5.6239 6.2483 5.9973 25 1 4.1411 8.0971 5.4854 26 1 3.3972 6.3171 6.9553 27 1 -0.3633 -1.0164 -0.1514 28 1 -0.3634 0.3772 0.9560 29 1 -0.3634 0.6393 -0.8045 30 1 2.8270 -2.3421 -2.0262 31 1 4.5332 -1.4443 0.5905 32 1 4.5246 -3.0586 1.3407 33 1 4.9557 -2.8776 -0.3765 34 1 0.2537 -2.4805 -0.0763 35 1 0.4534 -3.6988 1.2060 36 1 -0.1359 -2.0688 1.6110 37 1 2.2136 1.8065 1.4601 38 1 2.4557 1.8252 4.2740 39 1 4.0900 1.7744 3.5708 40 1 3.5788 3.7993 2.2347 41 1 1.9443 3.8506 2.9375 42 1 3.1394 7.3226 3.2136 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921905746.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:52 Heat of formation + Delta-G solvation = -60.369397 kcal Electronic energy + Delta-G solvation = -23469.558675 eV Core-core repulsion = 20063.847741 eV Total energy + Delta-G solvation = -3405.710934 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.38189 -39.23358 -37.34929 -35.23416 -34.87730 -32.89605 -32.06486 -30.72134 -29.85175 -29.17821 -25.23289 -24.54113 -23.94167 -22.40566 -21.13201 -20.61069 -18.76775 -18.26903 -17.51238 -16.85770 -16.33939 -15.68202 -15.38681 -15.00752 -14.55138 -14.32063 -14.19937 -14.00499 -13.87587 -13.50525 -13.19943 -12.95050 -12.88827 -12.44906 -12.29950 -12.19319 -12.03012 -11.87421 -11.29733 -11.20511 -11.01970 -10.85011 -10.64874 -10.46259 -10.32511 -9.88006 -9.55645 -9.42069 -9.28218 -8.88302 -8.48526 -8.29101 -6.08357 -4.11448 2.34572 2.50765 3.00998 3.31866 3.35914 3.38956 3.41016 4.03528 4.15051 4.29040 4.44413 4.60537 4.71203 4.81531 4.88550 5.02613 5.16127 5.28608 5.32694 5.43232 5.46925 5.54150 5.61368 5.65375 5.83950 5.95138 6.01382 6.15765 6.30771 6.36541 6.54590 6.74064 6.91258 6.98392 7.02987 7.54035 7.62210 7.89769 7.91831 8.17777 8.30802 8.82752 8.94649 9.53306 11.03203 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.025387 B = 0.003836 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.665961 B = 7298.287551 C = 7666.121147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.128 3.872 3 H 0.118 0.882 4 C 0.522 3.478 5 O -0.545 6.545 6 N -0.710 5.710 7 C 0.127 3.873 8 H 0.097 0.903 9 C -0.165 4.165 10 C 0.145 3.855 11 H 0.121 0.879 12 C -0.168 4.168 13 N -0.630 5.630 14 C 0.709 3.291 15 O -0.588 6.588 16 N -0.736 5.736 17 C 0.139 3.861 18 C 0.013 3.987 19 C -0.522 4.522 20 H 0.059 0.941 21 C 0.060 3.940 22 N -0.894 5.894 23 Si 0.897 3.103 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.398 0.602 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.392 0.608 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.475 -19.873 -8.582 22.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.020 3.980 3 H 0.136 0.864 4 C 0.307 3.693 5 O -0.422 6.422 6 N -0.361 5.361 7 C 0.021 3.979 8 H 0.114 0.886 9 C -0.223 4.223 10 C 0.040 3.960 11 H 0.139 0.861 12 C -0.226 4.226 13 N -0.370 5.370 14 C 0.410 3.590 15 O -0.467 6.467 16 N -0.391 5.391 17 C 0.017 3.983 18 C -0.025 4.025 19 C -0.561 4.561 20 H 0.077 0.923 21 C -0.142 4.142 22 N -0.532 5.532 23 Si 0.725 3.275 24 H -0.201 1.201 25 H -0.213 1.213 26 H -0.201 1.201 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.234 0.766 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.227 0.773 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.040 0.960 41 H 0.041 0.959 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.285 -19.673 -8.214 21.745 hybrid contribution 0.363 0.709 0.029 0.797 sum -3.922 -18.964 -8.184 21.023 Atomic orbital electron populations 1.22472 0.92074 1.04160 1.04003 1.21295 0.96676 0.97602 0.82422 0.86441 1.20214 0.76903 0.81380 0.90785 1.90795 1.56744 1.64609 1.30051 1.45441 1.62612 1.18000 1.10060 1.21385 0.96010 0.95943 0.84553 0.88558 1.22234 0.94701 1.03498 1.01891 1.21354 0.95467 0.79479 0.99688 0.86083 1.22476 0.95937 1.01848 1.02375 1.47573 1.67716 1.05837 1.15876 1.15859 0.78495 0.82425 0.82192 1.90888 1.54632 1.68114 1.33033 1.45731 1.67627 1.03919 1.21808 1.21638 0.97619 0.93566 0.85502 1.19325 0.97920 0.87238 0.98004 1.20988 1.42256 0.91271 1.01536 0.92273 1.24992 0.95254 0.97756 0.96217 1.69950 1.46622 1.07947 1.28719 0.86570 0.79593 0.78574 0.82781 1.20126 1.21252 1.20104 0.90615 0.90462 0.90477 0.76612 0.91926 0.90866 0.92248 0.91821 0.91169 0.91031 0.77270 0.92584 0.92681 0.95988 0.95937 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 8.48 37.16 0.32 -1.36 16 2 C 0.13 1.51 2.88 -68.91 -0.20 1.31 16 3 H 0.12 1.48 5.96 -51.93 -0.31 1.17 16 4 C 0.52 6.36 6.59 -11.73 -0.08 6.28 16 5 O -0.55 -8.48 17.80 5.56 0.10 -8.38 16 6 N -0.71 -6.49 4.76 -54.88 -0.26 -6.75 16 7 C 0.13 1.00 3.21 -68.49 -0.22 0.78 16 8 H 0.10 0.48 8.08 -51.93 -0.42 0.06 16 9 C -0.16 -1.50 9.36 37.16 0.35 -1.15 16 10 C 0.14 1.41 2.62 -67.61 -0.18 1.24 16 11 H 0.12 1.33 6.97 -51.93 -0.36 0.96 16 12 C -0.17 -1.28 7.57 37.16 0.28 -1.00 16 13 N -0.63 -7.91 2.27 -164.82 -0.37 -8.28 16 14 C 0.71 11.89 8.34 -86.92 -0.72 11.17 16 15 O -0.59 -11.70 15.82 5.29 0.08 -11.62 16 16 N -0.74 -12.97 5.46 -65.23 -0.36 -13.33 16 17 C 0.14 2.95 5.61 -4.04 -0.02 2.92 16 18 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 19 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 20 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 22 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 23 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H 0.08 0.65 4.55 -51.93 -0.24 0.42 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.40 3.08 8.80 -40.82 -0.36 2.72 16 31 H 0.06 0.77 7.99 -51.93 -0.42 0.36 16 32 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.47 5.44 -51.93 -0.28 0.19 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.62 7.58 -51.93 -0.39 0.22 16 37 H 0.39 6.26 6.11 -40.82 -0.25 6.01 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 LS Contribution 335.37 15.07 5.05 5.05 Total: -1.00 -33.14 335.37 -7.44 -40.58 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.37 Total: 4.57 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -1.03 Total: 7.22 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -0.26 Total: -53.76 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: 0.18 Total: -20.00 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.14 -7.44 -40.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921905746.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.785 kcal (2) G-P(sol) polarization free energy of solvation -33.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds