Wall clock time and date at job start Fri Apr 10 2020 17:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.66504 * 2 1 4 4 C 1.50441 * 109.56596 * 239.70857 * 2 1 3 5 5 O 1.21281 * 118.48907 * 47.44517 * 4 2 1 6 6 N 1.33389 * 123.02054 * 227.47123 * 4 2 1 7 7 C 1.46490 * 117.70402 * 184.29303 * 6 4 2 8 8 C 1.45651 * 124.58660 * 4.31317 * 6 4 2 9 9 H 1.08994 * 109.21262 * 217.76553 * 8 6 4 10 10 C 1.53002 * 109.21207 * 98.39253 * 8 6 4 11 11 C 1.53460 * 110.74053 * 337.98196 * 8 6 4 12 12 H 1.09007 * 109.83929 * 166.50306 * 11 8 6 13 13 C 1.52996 * 109.85189 * 287.31603 * 11 8 6 14 14 N 1.47045 * 109.56862 * 120.29837 * 2 1 3 15 15 C 1.34774 * 121.35456 * 342.53386 * 14 2 1 16 16 O 1.21589 * 120.00072 * 4.95688 * 15 14 2 17 17 N 1.34781 * 119.99917 * 184.94563 * 15 14 2 18 18 C 1.46504 * 119.99424 * 175.23562 * 17 15 14 19 19 C 1.50698 * 109.46698 * 179.72975 * 18 17 15 20 20 H 1.08002 * 120.00144 * 0.02562 * 19 18 17 21 21 C 1.37882 * 120.00019 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99801 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99907 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46860 * 89.99744 * 23 21 19 25 25 H 1.48494 * 109.46947 * 210.00123 * 23 21 19 26 26 H 1.48500 * 109.46950 * 330.00098 * 23 21 19 27 27 H 1.09008 * 109.46989 * 308.98383 * 1 2 3 28 28 H 1.09001 * 109.47701 * 68.98376 * 1 2 3 29 29 H 1.08994 * 109.47500 * 188.98709 * 1 2 3 30 30 H 1.08997 * 109.47623 * 0.02562 * 7 6 4 31 31 H 1.09004 * 109.47096 * 119.99790 * 7 6 4 32 32 H 1.08996 * 109.47518 * 239.99639 * 7 6 4 33 33 H 1.09002 * 109.47168 * 60.00157 * 10 8 6 34 34 H 1.09004 * 109.46827 * 179.97438 * 10 8 6 35 35 H 1.09004 * 109.47393 * 299.99675 * 10 8 6 36 36 H 1.08998 * 109.47247 * 178.50727 * 13 11 8 37 37 H 1.09004 * 109.47039 * 298.49917 * 13 11 8 38 38 H 1.08999 * 109.47050 * 58.50161 * 13 11 8 39 39 H 0.96998 * 120.00189 * 354.96550 * 17 15 14 40 40 H 1.09006 * 109.47110 * 299.72629 * 18 17 15 41 41 H 1.08994 * 109.47544 * 59.73010 * 18 17 15 42 42 H 0.97002 * 119.99312 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8968 1.0265 0.0000 4 6 2.0338 -0.7150 -1.2240 5 8 1.5482 -0.4337 -2.2992 6 7 2.9896 -1.6445 -1.1811 7 6 3.4592 -2.1977 -2.4536 8 6 3.5986 -2.1482 0.0424 9 1 4.6618 -2.3163 -0.1292 10 6 2.9351 -3.4720 0.4270 11 6 3.4267 -1.1427 1.1889 12 1 3.6665 -1.6204 2.1389 13 6 4.3469 0.0595 0.9680 14 7 2.0225 -0.6990 1.1963 15 6 1.2229 -0.9196 2.2585 16 8 0.0458 -0.6194 2.2063 17 7 1.7280 -1.4733 3.3788 18 6 0.8856 -1.6173 4.5687 19 6 1.6813 -2.2660 5.6718 20 1 2.7116 -2.5429 5.5036 21 6 1.0943 -2.5052 6.8964 22 7 1.7886 -3.0718 7.8589 23 14 -0.6870 -2.0243 7.1880 24 1 -1.5724 -3.1586 6.8208 25 1 -0.8808 -1.6890 8.6216 26 1 -1.0238 -0.8431 6.3535 27 1 -0.3633 0.6466 0.7989 28 1 -0.3634 0.3685 -0.9593 29 1 -0.3634 -1.0150 0.1605 30 1 2.9174 -1.7296 -3.2754 31 1 4.5258 -2.0013 -2.5636 32 1 3.2845 -3.2734 -2.4688 33 1 3.0754 -4.1956 -0.3760 34 1 3.3883 -3.8531 1.3422 35 1 1.8692 -3.3108 0.5888 36 1 4.2006 0.7815 1.7713 37 1 5.3848 -0.2733 0.9633 38 1 4.1108 0.5268 0.0119 39 1 2.6481 -1.7799 3.3959 40 1 0.5466 -0.6341 4.8950 41 1 0.0224 -2.2384 4.3297 42 1 1.3755 -3.2403 8.7202 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922230571.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:57 Heat of formation + Delta-G solvation = -36.608013 kcal Electronic energy + Delta-G solvation = -24107.956963 eV Core-core repulsion = 20703.276400 eV Total energy + Delta-G solvation = -3404.680563 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.32750 -39.22425 -37.29943 -35.32083 -34.51821 -32.67759 -32.04567 -30.44441 -29.75500 -27.49684 -27.38157 -24.44987 -23.56989 -22.51129 -21.96527 -20.18134 -18.61932 -17.56558 -17.50048 -16.64124 -16.25525 -15.84096 -15.34278 -15.02470 -14.53020 -14.36162 -13.99149 -13.84154 -13.50149 -13.21950 -13.15099 -12.76254 -12.69108 -12.45160 -12.35564 -12.22403 -11.98800 -11.89648 -11.69047 -11.55773 -11.35880 -11.09469 -10.98238 -10.77737 -10.16229 -9.97548 -9.51273 -8.99792 -8.95010 -8.80282 -8.57739 -8.06313 -6.24015 -4.26152 2.46315 2.61691 2.95676 3.25992 3.33211 3.41213 3.62768 4.17109 4.20667 4.31720 4.53096 4.69044 4.79553 5.02501 5.10726 5.11865 5.13801 5.20311 5.28347 5.34343 5.45133 5.55202 5.59639 5.60884 5.68926 5.91414 5.97483 6.09822 6.14382 6.21680 6.40879 6.66708 6.73265 7.07737 7.17513 7.23585 7.30261 7.43455 7.99179 8.20327 8.57904 8.74584 9.10204 9.37019 10.87828 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.025763 B = 0.004856 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.549202 B = 5764.843729 C = 6275.297746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.156 3.844 3 H 0.097 0.903 4 C 0.514 3.486 5 O -0.547 6.547 6 N -0.598 5.598 7 C 0.068 3.932 8 C 0.132 3.868 9 H 0.095 0.905 10 C -0.168 4.168 11 C 0.127 3.873 12 H 0.110 0.890 13 C -0.162 4.162 14 N -0.633 5.633 15 C 0.704 3.296 16 O -0.587 6.587 17 N -0.720 5.720 18 C 0.238 3.762 19 C -0.542 4.542 20 H 0.078 0.922 21 C 0.079 3.921 22 N -0.892 5.892 23 Si 0.877 3.123 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.260 1.260 27 H 0.092 0.908 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.389 0.611 40 H 0.023 0.977 41 H 0.020 0.980 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.378 2.594 -16.640 18.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.049 3.951 3 H 0.115 0.885 4 C 0.302 3.698 5 O -0.424 6.424 6 N -0.330 5.330 7 C -0.074 4.074 8 C 0.027 3.973 9 H 0.113 0.887 10 C -0.226 4.226 11 C 0.022 3.978 12 H 0.128 0.872 13 C -0.220 4.220 14 N -0.374 5.374 15 C 0.406 3.594 16 O -0.465 6.465 17 N -0.374 5.374 18 C 0.115 3.885 19 C -0.580 4.580 20 H 0.096 0.904 21 C -0.125 4.125 22 N -0.530 5.530 23 Si 0.703 3.297 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.185 1.185 27 H 0.111 0.889 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.225 0.775 40 H 0.041 0.959 41 H 0.038 0.962 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.203 2.904 -16.951 18.283 hybrid contribution -0.171 -0.175 0.392 0.463 sum 6.031 2.729 -16.559 17.833 Atomic orbital electron populations 1.22048 0.89711 1.04818 1.01898 1.21084 0.98145 0.95339 0.80531 0.88540 1.20555 0.78611 0.79372 0.91267 1.90685 1.56669 1.65062 1.29963 1.47173 1.38470 1.39883 1.07508 1.21782 0.99620 0.99037 0.86999 1.21498 0.97866 0.94092 0.83843 0.88713 1.22240 1.02331 0.95907 1.02110 1.21697 0.82234 0.94907 0.99011 0.87193 1.22134 0.99138 0.98007 1.02767 1.47523 1.10623 1.62895 1.16379 1.15935 0.84562 0.79076 0.79807 1.90904 1.14544 1.58937 1.82153 1.45628 1.16218 1.63628 1.11949 1.19382 0.90844 0.96778 0.81449 1.21056 1.00010 1.41278 0.95695 0.90381 1.24767 0.98170 0.94042 0.95526 1.69878 1.37029 1.41994 1.04071 0.86819 0.84973 0.80135 0.77771 1.19869 1.20962 1.18452 0.88942 0.92628 0.91549 0.89086 0.92196 0.92244 0.92107 0.90634 0.91794 0.91084 0.90884 0.92389 0.77531 0.95906 0.96221 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 7.57 37.16 0.28 -1.74 16 2 C 0.16 2.21 2.89 -68.91 -0.20 2.01 16 3 H 0.10 1.24 7.82 -51.93 -0.41 0.83 16 4 C 0.51 7.20 6.54 -11.73 -0.08 7.12 16 5 O -0.55 -9.02 15.19 5.56 0.08 -8.94 16 6 N -0.60 -6.70 2.70 -174.81 -0.47 -7.17 16 7 C 0.07 0.62 10.36 59.84 0.62 1.24 16 8 C 0.13 1.26 2.52 -68.15 -0.17 1.09 16 9 H 0.09 0.66 8.02 -51.93 -0.42 0.24 16 10 C -0.17 -1.75 9.31 37.16 0.35 -1.41 16 11 C 0.13 1.37 2.65 -67.27 -0.18 1.19 16 12 H 0.11 1.17 5.59 -51.92 -0.29 0.88 16 13 C -0.16 -1.45 9.04 37.16 0.34 -1.11 16 14 N -0.63 -9.10 2.51 -164.43 -0.41 -9.51 16 15 C 0.70 13.13 8.17 -86.92 -0.71 12.42 16 16 O -0.59 -12.79 12.22 5.29 0.06 -12.72 16 17 N -0.72 -13.97 5.47 -66.41 -0.36 -14.33 16 18 C 0.24 5.66 4.50 -5.19 -0.02 5.63 16 19 C -0.54 -14.35 9.83 -34.44 -0.34 -14.68 16 20 H 0.08 2.14 7.84 -52.49 -0.41 1.72 16 21 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 22 N -0.89 -25.88 13.96 55.43 0.77 -25.10 16 23 Si 0.88 21.06 27.47 -169.99 -4.67 16.39 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 27 H 0.09 1.59 6.51 -51.92 -0.34 1.25 16 28 H 0.05 0.83 7.60 -51.93 -0.39 0.43 16 29 H 0.07 1.18 7.21 -51.93 -0.37 0.81 16 30 H 0.09 0.98 6.59 -51.93 -0.34 0.63 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.48 7.75 -51.93 -0.40 0.07 16 33 H 0.06 0.56 7.75 -51.93 -0.40 0.16 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.87 7.99 -51.93 -0.41 0.46 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.54 6.81 -51.93 -0.35 0.19 16 39 H 0.39 6.61 5.85 -40.82 -0.24 6.37 16 40 H 0.02 0.58 7.20 -51.93 -0.37 0.20 16 41 H 0.02 0.50 7.57 -51.93 -0.39 0.10 16 42 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 328.09 15.07 4.94 4.94 Total: -1.00 -32.26 328.09 -6.67 -38.93 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -6.41 Total: 3.68 kcal Atomic # 6 Polarization: 14.05 SS G_CDS: -0.21 Total: 13.83 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -0.47 Total: -56.12 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: 0.15 Total: -21.66 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.26 -6.67 -38.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922230571.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.322 kcal (2) G-P(sol) polarization free energy of solvation -32.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds