Wall clock time and date at job start Fri Apr 10 2020 17:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.66504 * 2 1 4 4 C 1.50441 * 109.56596 * 239.70857 * 2 1 3 5 5 O 1.21281 * 118.48907 * 47.44517 * 4 2 1 6 6 N 1.33389 * 123.02054 * 227.47123 * 4 2 1 7 7 C 1.46490 * 117.70402 * 184.29303 * 6 4 2 8 8 C 1.45651 * 124.58660 * 4.31317 * 6 4 2 9 9 H 1.08994 * 109.21262 * 217.76553 * 8 6 4 10 10 C 1.53002 * 109.21207 * 98.39253 * 8 6 4 11 11 C 1.53460 * 110.74053 * 337.98196 * 8 6 4 12 12 H 1.09007 * 109.83929 * 166.50306 * 11 8 6 13 13 C 1.52996 * 109.85189 * 287.31603 * 11 8 6 14 14 N 1.47045 * 109.56862 * 120.29837 * 2 1 3 15 15 C 1.34774 * 121.35456 * 342.53386 * 14 2 1 16 16 O 1.21589 * 120.00072 * 4.95688 * 15 14 2 17 17 N 1.34781 * 119.99917 * 184.94563 * 15 14 2 18 18 C 1.46504 * 119.99424 * 175.23562 * 17 15 14 19 19 C 1.50698 * 109.46698 * 179.72975 * 18 17 15 20 20 H 1.08002 * 120.00144 * 0.02562 * 19 18 17 21 21 C 1.37882 * 120.00019 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99801 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99907 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46860 * 89.99744 * 23 21 19 25 25 H 1.48494 * 109.46947 * 210.00123 * 23 21 19 26 26 H 1.48500 * 109.46950 * 330.00098 * 23 21 19 27 27 H 1.09008 * 109.46989 * 308.98383 * 1 2 3 28 28 H 1.09001 * 109.47701 * 68.98376 * 1 2 3 29 29 H 1.08994 * 109.47500 * 188.98709 * 1 2 3 30 30 H 1.08997 * 109.47623 * 0.02562 * 7 6 4 31 31 H 1.09004 * 109.47096 * 119.99790 * 7 6 4 32 32 H 1.08996 * 109.47518 * 239.99639 * 7 6 4 33 33 H 1.09002 * 109.47168 * 60.00157 * 10 8 6 34 34 H 1.09004 * 109.46827 * 179.97438 * 10 8 6 35 35 H 1.09004 * 109.47393 * 299.99675 * 10 8 6 36 36 H 1.08998 * 109.47247 * 178.50727 * 13 11 8 37 37 H 1.09004 * 109.47039 * 298.49917 * 13 11 8 38 38 H 1.08999 * 109.47050 * 58.50161 * 13 11 8 39 39 H 0.96998 * 120.00189 * 354.96550 * 17 15 14 40 40 H 1.09006 * 109.47110 * 299.72629 * 18 17 15 41 41 H 1.08994 * 109.47544 * 59.73010 * 18 17 15 42 42 H 0.97002 * 119.99312 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8968 1.0265 0.0000 4 6 2.0338 -0.7150 -1.2240 5 8 1.5482 -0.4337 -2.2992 6 7 2.9896 -1.6445 -1.1811 7 6 3.4592 -2.1977 -2.4536 8 6 3.5986 -2.1482 0.0424 9 1 4.6618 -2.3163 -0.1292 10 6 2.9351 -3.4720 0.4270 11 6 3.4267 -1.1427 1.1889 12 1 3.6665 -1.6204 2.1389 13 6 4.3469 0.0595 0.9680 14 7 2.0225 -0.6990 1.1963 15 6 1.2229 -0.9196 2.2585 16 8 0.0458 -0.6194 2.2063 17 7 1.7280 -1.4733 3.3788 18 6 0.8856 -1.6173 4.5687 19 6 1.6813 -2.2660 5.6718 20 1 2.7116 -2.5429 5.5036 21 6 1.0943 -2.5052 6.8964 22 7 1.7886 -3.0718 7.8589 23 14 -0.6870 -2.0243 7.1880 24 1 -1.5724 -3.1586 6.8208 25 1 -0.8808 -1.6890 8.6216 26 1 -1.0238 -0.8431 6.3535 27 1 -0.3633 0.6466 0.7989 28 1 -0.3634 0.3685 -0.9593 29 1 -0.3634 -1.0150 0.1605 30 1 2.9174 -1.7296 -3.2754 31 1 4.5258 -2.0013 -2.5636 32 1 3.2845 -3.2734 -2.4688 33 1 3.0754 -4.1956 -0.3760 34 1 3.3883 -3.8531 1.3422 35 1 1.8692 -3.3108 0.5888 36 1 4.2006 0.7815 1.7713 37 1 5.3848 -0.2733 0.9633 38 1 4.1108 0.5268 0.0119 39 1 2.6481 -1.7799 3.3959 40 1 0.5466 -0.6341 4.8950 41 1 0.0224 -2.2384 4.3297 42 1 1.3755 -3.2403 8.7202 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922230571.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:57 Heat of formation + Delta-G solvation = -59.163516 kcal Electronic energy + Delta-G solvation = -24108.935043 eV Core-core repulsion = 20703.276400 eV Total energy + Delta-G solvation = -3405.658643 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.44770 -40.56482 -38.39355 -36.67936 -36.00535 -34.55127 -33.25688 -31.62176 -30.81609 -29.20692 -28.32942 -25.48459 -24.74466 -23.78524 -23.40283 -21.63043 -20.03469 -18.71917 -18.61855 -18.36079 -17.45853 -17.05617 -16.52144 -16.44091 -16.16013 -15.64589 -15.11225 -15.01093 -14.90215 -14.44000 -14.35744 -14.15239 -14.02178 -13.73646 -13.53699 -13.20615 -13.10096 -12.99916 -12.88062 -12.74482 -12.66884 -12.50437 -12.28867 -12.00243 -11.90082 -11.59132 -11.33331 -10.88601 -10.50658 -10.05786 -9.83687 -9.50993 -8.36896 -6.42634 1.33392 1.35393 1.38440 1.48290 1.50179 1.92161 2.15643 2.30790 2.97210 2.99549 3.27429 3.43778 3.79071 3.90382 3.99784 4.13467 4.27743 4.33387 4.48395 4.60496 4.67320 4.72069 4.74098 4.78051 4.84466 4.86279 4.89571 4.97802 5.09097 5.12143 5.23130 5.24898 5.29790 5.36254 5.47760 5.60000 5.84478 6.18841 6.27172 6.58744 6.95177 7.07181 7.22239 7.62867 8.77485 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.025763 B = 0.004856 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.549202 B = 5764.843729 C = 6275.297746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.154 3.846 3 H 0.115 0.885 4 C 0.514 3.486 5 O -0.577 6.577 6 N -0.592 5.592 7 C 0.066 3.934 8 C 0.134 3.866 9 H 0.140 0.860 10 C -0.165 4.165 11 C 0.117 3.883 12 H 0.113 0.887 13 C -0.155 4.155 14 N -0.623 5.623 15 C 0.704 3.296 16 O -0.622 6.622 17 N -0.717 5.717 18 C 0.252 3.748 19 C -0.540 4.540 20 H 0.063 0.937 21 C 0.031 3.969 22 N -0.930 5.930 23 Si 0.932 3.068 24 H -0.268 1.268 25 H -0.275 1.275 26 H -0.260 1.260 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.025 0.975 36 H 0.061 0.939 37 H 0.104 0.896 38 H 0.055 0.945 39 H 0.401 0.599 40 H 0.011 0.989 41 H 0.007 0.993 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.087 2.538 -17.763 20.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.047 3.953 3 H 0.132 0.868 4 C 0.301 3.699 5 O -0.457 6.457 6 N -0.323 5.323 7 C -0.076 4.076 8 C 0.030 3.970 9 H 0.157 0.843 10 C -0.223 4.223 11 C 0.014 3.986 12 H 0.131 0.869 13 C -0.213 4.213 14 N -0.363 5.363 15 C 0.406 3.594 16 O -0.504 6.504 17 N -0.373 5.373 18 C 0.128 3.872 19 C -0.578 4.578 20 H 0.081 0.919 21 C -0.170 4.170 22 N -0.569 5.569 23 Si 0.757 3.243 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.185 1.185 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.044 0.956 36 H 0.080 0.920 37 H 0.123 0.877 38 H 0.075 0.925 39 H 0.239 0.761 40 H 0.029 0.971 41 H 0.025 0.975 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.987 2.828 -18.106 19.991 hybrid contribution -0.616 -0.202 0.679 0.939 sum 7.371 2.626 -17.428 19.104 Atomic orbital electron populations 1.21836 0.91305 1.02729 1.01508 1.21127 0.96993 0.96487 0.80697 0.86795 1.20364 0.79152 0.80032 0.90360 1.90678 1.57947 1.66364 1.30692 1.47250 1.37348 1.38650 1.09015 1.21954 1.01113 0.99439 0.85071 1.21686 0.99965 0.92774 0.82569 0.84285 1.22228 0.99953 0.96944 1.03212 1.22080 0.80207 0.96356 0.99980 0.86890 1.22104 1.00228 0.96725 1.02248 1.47444 1.11822 1.62040 1.15001 1.16001 0.84416 0.78646 0.80337 1.90890 1.16365 1.60181 1.82939 1.45294 1.16407 1.64326 1.11253 1.18950 0.90594 0.95399 0.82249 1.21235 0.99568 1.40622 0.96387 0.91927 1.25491 1.01810 0.94160 0.95514 1.69969 1.38753 1.43444 1.04706 0.85934 0.80612 0.79832 0.77954 1.19359 1.20027 1.18466 0.90524 0.91959 0.94111 0.90978 0.89015 0.90907 0.90541 0.89834 0.95563 0.91999 0.87737 0.92545 0.76086 0.97112 0.97490 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.77 7.57 71.98 0.55 -3.23 16 2 C 0.15 4.26 2.89 44.06 0.13 4.38 16 3 H 0.11 2.78 7.82 -2.38 -0.02 2.76 16 4 C 0.51 13.71 6.54 87.79 0.57 14.29 16 5 O -0.58 -18.66 15.19 -3.03 -0.05 -18.70 16 6 N -0.59 -11.67 2.70 -826.14 -2.23 -13.90 16 7 C 0.07 0.98 10.36 127.77 1.32 2.31 16 8 C 0.13 2.10 2.52 45.31 0.11 2.21 16 9 H 0.14 1.12 8.02 -2.39 -0.02 1.10 16 10 C -0.17 -3.08 9.31 71.98 0.67 -2.41 16 11 C 0.12 2.23 2.65 45.00 0.12 2.35 16 12 H 0.11 2.11 5.59 -2.38 -0.01 2.10 16 13 C -0.16 -2.24 9.04 71.98 0.65 -1.59 16 14 N -0.62 -17.37 2.51 -792.40 -1.99 -19.36 16 15 C 0.70 26.29 8.17 179.05 1.46 27.75 16 16 O -0.62 -27.74 12.22 -4.00 -0.05 -27.79 16 17 N -0.72 -27.70 5.47 -482.28 -2.64 -30.34 16 18 C 0.25 12.04 4.50 85.63 0.39 12.42 16 19 C -0.54 -28.67 9.83 25.60 0.25 -28.42 16 20 H 0.06 3.45 7.84 -2.91 -0.02 3.43 16 21 C 0.03 1.69 5.47 84.66 0.46 2.15 16 22 N -0.93 -54.09 13.96 21.45 0.30 -53.79 16 23 Si 0.93 43.40 27.47 68.60 1.88 45.29 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 25 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 26 H -0.26 -12.05 6.54 99.48 0.65 -11.40 16 27 H 0.08 2.72 6.51 -2.38 -0.02 2.70 16 28 H 0.06 1.90 7.60 -2.39 -0.02 1.88 16 29 H 0.04 1.50 7.21 -2.39 -0.02 1.49 16 30 H 0.07 1.41 6.59 -2.39 -0.02 1.39 16 31 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.07 0.92 7.75 -2.39 -0.02 0.90 16 33 H 0.08 1.18 7.75 -2.39 -0.02 1.16 16 34 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.03 0.68 7.99 -2.39 -0.02 0.66 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.06 0.86 6.81 -2.39 -0.02 0.84 16 39 H 0.40 13.33 5.85 -92.71 -0.54 12.78 16 40 H 0.01 0.55 7.20 -2.38 -0.02 0.53 16 41 H 0.01 0.36 7.57 -2.39 -0.02 0.34 16 42 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -71.04 328.09 2.34 -68.70 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.43 Total: 17.67 kcal Atomic # 6 Polarization: 25.54 SS G_CDS: 6.69 Total: 32.23 kcal Atomic # 7 Polarization: -110.83 SS G_CDS: -6.56 Total: -117.39 kcal Atomic # 8 Polarization: -46.40 SS G_CDS: -0.09 Total: -46.50 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.88 Total: 45.29 kcal Total: -71.04 2.34 -68.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922230571.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.535 kcal (2) G-P(sol) polarization free energy of solvation -71.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds