Wall clock time and date at job start Fri Apr 10 2020 17:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 110.32765 * 2 1 4 4 C 1.54916 * 110.45657 * 122.29831 * 2 1 3 5 5 C 1.55159 * 101.58272 * 155.89580 * 4 2 1 6 6 C 1.54330 * 102.93879 * 324.49680 * 5 4 2 7 7 C 1.53004 * 109.88017 * 262.77435 * 6 5 4 8 8 C 1.53000 * 110.01076 * 141.68455 * 6 5 4 9 9 N 1.47019 * 107.27305 * 22.19340 * 6 5 4 10 10 C 1.34777 * 125.64775 * 181.02714 * 9 6 5 11 11 O 1.21588 * 119.99529 * 184.43761 * 10 9 6 12 12 N 1.34768 * 119.99932 * 4.43225 * 10 9 6 13 13 C 1.46500 * 119.99952 * 174.55138 * 12 10 9 14 14 C 1.50700 * 109.47300 * 180.02562 * 13 12 10 15 15 O 1.21294 * 119.99900 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99906 * 180.02562 * 14 13 12 17 17 C 1.37095 * 119.99763 * 179.97438 * 16 14 13 18 18 H 1.08001 * 120.00281 * 0.02562 * 17 16 14 19 19 C 1.38955 * 120.00119 * 179.97438 * 17 16 14 20 20 N 1.31408 * 119.99530 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00040 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47183 * 60.00332 * 21 19 17 23 23 H 1.48504 * 109.46904 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47378 * 300.00473 * 21 19 17 25 25 H 1.08998 * 109.47717 * 186.83379 * 1 2 3 26 26 H 1.09002 * 109.47375 * 306.82912 * 1 2 3 27 27 H 1.09002 * 109.47221 * 66.83078 * 1 2 3 28 28 H 1.09003 * 111.00217 * 273.96530 * 4 2 1 29 29 H 1.08998 * 111.00877 * 37.77771 * 4 2 1 30 30 H 1.08998 * 110.72042 * 206.13243 * 5 4 2 31 31 H 1.09003 * 110.72277 * 82.85748 * 5 4 2 32 32 H 1.08995 * 109.46881 * 172.74826 * 7 6 5 33 33 H 1.09000 * 109.46866 * 52.75040 * 7 6 5 34 34 H 1.08996 * 109.46948 * 292.75226 * 7 6 5 35 35 H 1.08998 * 109.46742 * 181.79751 * 8 6 5 36 36 H 1.09001 * 109.47038 * 301.79951 * 8 6 5 37 37 H 1.09004 * 109.47303 * 61.79772 * 8 6 5 38 38 H 0.96994 * 120.00074 * 354.55456 * 12 10 9 39 39 H 1.09000 * 109.47436 * 300.00050 * 13 12 10 40 40 H 1.09007 * 109.47337 * 59.99823 * 13 12 10 41 41 H 0.96996 * 120.00031 * 359.97438 * 16 14 13 42 42 H 0.97002 * 119.99787 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0714 -0.7756 1.2269 5 6 3.4802 -1.1971 0.7320 6 6 3.2507 -1.4741 -0.7688 7 6 3.0450 -2.9731 -0.9957 8 6 4.4516 -0.9851 -1.5810 9 7 2.0430 -0.7373 -1.1690 10 6 1.4960 -0.7357 -2.4007 11 8 0.5395 -0.0243 -2.6401 12 7 2.0093 -1.5225 -3.3670 13 6 1.3442 -1.6116 -4.6693 14 6 2.1130 -2.5506 -5.5628 15 8 3.1179 -3.0918 -5.1523 16 7 1.6845 -2.7882 -6.8184 17 6 2.3842 -3.6420 -7.6314 18 1 3.2785 -4.1246 -7.2656 19 6 1.9423 -3.8875 -8.9257 20 7 0.8538 -3.3007 -9.3705 21 14 2.8952 -5.0514 -10.0331 22 1 2.9450 -6.3982 -9.4097 23 1 2.2214 -5.1412 -11.3534 24 1 4.2771 -4.5396 -10.2169 25 1 -0.3634 -1.0203 0.1223 26 1 -0.3634 0.6160 0.8226 27 1 -0.3634 0.4043 -0.9448 28 1 2.1420 -0.1262 2.0995 29 1 1.4544 -1.6483 1.4409 30 1 3.8147 -2.0994 1.2440 31 1 4.1959 -0.3865 0.8696 32 1 2.7568 -3.1474 -2.0324 33 1 2.2586 -3.3362 -0.3340 34 1 3.9730 -3.5036 -0.7824 35 1 4.2667 -1.1558 -2.6415 36 1 4.5998 0.0804 -1.4048 37 1 5.3439 -1.5314 -1.2752 38 1 2.8189 -2.0299 -3.2002 39 1 0.3301 -1.9878 -4.5345 40 1 1.3072 -0.6229 -5.1268 41 1 0.8812 -2.3552 -7.1468 42 1 0.5450 -3.4723 -10.2740 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922467720.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:28:02 Heat of formation + Delta-G solvation = -62.563981 kcal Electronic energy + Delta-G solvation = -23303.931192 eV Core-core repulsion = 19898.125094 eV Total energy + Delta-G solvation = -3405.806098 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.76890 -38.53365 -37.60114 -34.86416 -33.97441 -32.82837 -31.65095 -31.28934 -28.71926 -27.49532 -27.27093 -24.52608 -23.75767 -22.18071 -20.65673 -19.73584 -19.25266 -18.04048 -17.00221 -16.44244 -15.57602 -15.38608 -15.04707 -14.76494 -14.25770 -14.06235 -14.02124 -13.80511 -13.74420 -13.48991 -13.12604 -12.70751 -12.54830 -12.26091 -12.09762 -11.94984 -11.68188 -11.61555 -11.54404 -11.34365 -11.09324 -10.95186 -10.80610 -10.64428 -10.49775 -10.29721 -9.61692 -9.60491 -8.83493 -8.60006 -8.34668 -8.08117 -6.49723 -3.91689 2.76060 3.14661 3.22276 3.26163 3.43286 3.77260 3.98639 4.15162 4.34834 4.56224 4.68247 4.91381 4.92023 5.00715 5.12233 5.19032 5.34301 5.44748 5.49111 5.56390 5.60375 5.63490 5.72809 5.78218 5.85353 5.91107 5.96875 6.04142 6.10649 6.13246 6.17403 6.24025 6.30254 6.60196 6.88556 7.33073 7.47274 7.94062 8.27807 8.47319 8.88952 9.06219 9.41516 9.89544 10.67167 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.032038 B = 0.003705 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.739559 B = 7556.511054 C = 8158.610077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.155 3.845 3 H 0.070 0.930 4 C -0.130 4.130 5 C -0.120 4.120 6 C 0.151 3.849 7 C -0.168 4.168 8 C -0.165 4.165 9 N -0.627 5.627 10 C 0.726 3.274 11 O -0.593 6.593 12 N -0.727 5.727 13 C 0.125 3.875 14 C 0.429 3.571 15 O -0.599 6.599 16 N -0.549 5.549 17 C -0.305 4.305 18 H 0.105 0.895 19 C 0.026 3.974 20 N -0.895 5.895 21 Si 0.934 3.066 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.273 1.273 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.409 0.591 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.396 0.604 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.757 4.622 18.943 19.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.051 3.949 3 H 0.088 0.912 4 C -0.168 4.168 5 C -0.158 4.158 6 C 0.066 3.934 7 C -0.227 4.227 8 C -0.223 4.223 9 N -0.366 5.366 10 C 0.428 3.572 11 O -0.472 6.472 12 N -0.389 5.389 13 C -0.004 4.004 14 C 0.215 3.785 15 O -0.485 6.485 16 N -0.183 5.183 17 C -0.435 4.435 18 H 0.122 0.878 19 C -0.177 4.177 20 N -0.535 5.535 21 Si 0.760 3.240 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.198 1.198 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.114 0.886 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.251 0.749 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.230 0.770 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.578 4.735 18.705 19.466 hybrid contribution 0.325 -0.582 -0.821 1.057 sum 2.903 4.154 17.883 18.588 Atomic orbital electron populations 1.22255 0.94101 1.02125 1.04425 1.21646 0.95027 0.94846 0.83374 0.91230 1.22888 0.96236 1.00625 0.97074 1.22674 0.97459 1.02352 0.93280 1.21047 0.85363 0.92157 0.94863 1.22391 1.02485 0.94269 1.03515 1.22316 0.97281 1.01626 1.01076 1.47746 1.28874 1.51616 1.08360 1.15371 0.82086 0.80555 0.79172 1.90807 1.30172 1.45484 1.80745 1.45335 1.31621 1.49388 1.12587 1.20803 0.96221 1.00279 0.83084 1.19773 0.87899 0.87020 0.83855 1.90482 1.27961 1.55362 1.74727 1.41773 1.25813 1.40453 1.10301 1.19678 1.09010 1.21388 0.93406 0.87752 1.25318 0.96506 0.98245 0.97616 1.69609 1.22297 1.42888 1.18705 0.85876 0.79319 0.80210 0.78578 1.19796 1.20863 1.19795 0.92916 0.92444 0.88634 0.90017 0.90536 0.89948 0.90431 0.90948 0.92069 0.91193 0.91498 0.92070 0.91126 0.74862 0.90158 0.89995 0.77017 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 8.99 37.15 0.33 -1.73 16 2 C 0.15 1.77 3.74 -66.42 -0.25 1.52 16 3 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 4 C -0.13 -1.07 6.51 -24.58 -0.16 -1.23 16 5 C -0.12 -0.98 6.02 -24.89 -0.15 -1.13 16 6 C 0.15 1.72 0.80 -130.84 -0.10 1.61 16 7 C -0.17 -2.00 8.32 37.16 0.31 -1.69 16 8 C -0.16 -1.91 8.36 37.16 0.31 -1.59 16 9 N -0.63 -8.69 2.74 -154.04 -0.42 -9.11 16 10 C 0.73 12.75 7.77 -86.93 -0.68 12.07 16 11 O -0.59 -11.86 14.04 5.29 0.07 -11.78 16 12 N -0.73 -13.20 4.52 -66.41 -0.30 -13.50 16 13 C 0.12 2.42 6.16 -5.19 -0.03 2.39 16 14 C 0.43 10.03 7.85 -10.98 -0.09 9.95 16 15 O -0.60 -15.44 15.24 5.55 0.08 -15.35 16 16 N -0.55 -13.76 5.29 -10.96 -0.06 -13.82 16 17 C -0.31 -8.35 9.68 -14.93 -0.14 -8.49 16 18 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 19 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 20 N -0.89 -24.04 13.05 55.50 0.72 -23.31 16 21 Si 0.93 20.62 29.55 -169.99 -5.02 15.60 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 H 0.05 0.64 8.04 -51.93 -0.42 0.23 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.10 1.46 5.57 -51.93 -0.29 1.18 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.64 7.99 -51.93 -0.41 0.22 16 30 H 0.08 0.57 7.83 -51.93 -0.41 0.16 16 31 H 0.08 0.56 7.85 -51.93 -0.41 0.16 16 32 H 0.07 1.08 5.29 -51.93 -0.27 0.80 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.96 5.93 -51.93 -0.31 0.65 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.41 7.35 2.65 -40.82 -0.11 7.24 16 39 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 41 H 0.40 9.58 7.90 -40.82 -0.32 9.26 16 42 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 333.24 15.07 5.02 5.02 Total: -1.00 -31.03 333.24 -6.90 -37.93 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: -6.26 Total: 16.06 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: -0.74 Total: 12.27 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: -0.06 Total: -59.74 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: 0.16 Total: -27.14 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.03 -6.90 -37.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922467720.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.632 kcal (2) G-P(sol) polarization free energy of solvation -31.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds