Wall clock time and date at job start Fri Apr 10 2020 17:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46903 * 110.99863 * 2 1 4 4 C 1.46905 * 110.99911 * 123.94666 * 2 1 3 5 5 C 1.52998 * 109.46932 * 164.21365 * 4 2 1 6 6 H 1.09000 * 110.53713 * 62.37483 * 5 4 2 7 7 N 1.47321 * 110.59894 * 299.54737 * 5 4 2 8 8 C 1.34868 * 106.43689 * 241.51984 * 7 5 4 9 9 O 1.21532 * 123.72425 * 179.97438 * 8 7 5 10 10 N 1.33794 * 112.50365 * 359.86855 * 8 7 5 11 11 C 1.46492 * 124.17933 * 180.12398 * 10 8 7 12 12 C 1.52999 * 109.46988 * 269.95468 * 11 10 8 13 13 C 1.53004 * 109.47327 * 300.00132 * 12 11 10 14 14 C 1.52997 * 109.47316 * 60.00060 * 12 11 10 15 15 C 1.50705 * 109.47064 * 179.97438 * 12 11 10 16 16 H 1.07997 * 120.00038 * 0.02562 * 15 12 11 17 17 C 1.37878 * 119.99886 * 179.97438 * 15 12 11 18 18 N 1.31521 * 119.99981 * 0.02562 * 17 15 12 19 19 Si 1.86795 * 120.00001 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.47233 * 60.00189 * 19 17 15 21 21 H 1.48503 * 109.47486 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47163 * 300.00353 * 19 17 15 23 23 C 1.34774 * 111.64102 * 0.08114 * 10 8 7 24 24 O 1.21241 * 127.15419 * 179.97438 * 23 10 8 25 25 H 1.08998 * 109.47001 * 57.19097 * 1 2 3 26 26 H 1.08993 * 109.47178 * 297.19139 * 1 2 3 27 27 H 1.09004 * 109.46824 * 177.19172 * 1 2 3 28 28 H 1.08996 * 109.47478 * 63.94761 * 3 2 1 29 29 H 1.08999 * 109.47344 * 183.95426 * 3 2 1 30 30 H 1.08999 * 109.46954 * 303.95132 * 3 2 1 31 31 H 1.08993 * 109.47577 * 284.21346 * 4 2 1 32 32 H 1.09000 * 109.46731 * 44.21960 * 4 2 1 33 33 H 0.97001 * 126.69096 * 61.44335 * 7 5 4 34 34 H 1.08999 * 109.47389 * 29.95326 * 11 10 8 35 35 H 1.09001 * 109.47526 * 149.95972 * 11 10 8 36 36 H 1.08991 * 109.46816 * 59.99956 * 13 12 11 37 37 H 1.09000 * 109.47149 * 180.02562 * 13 12 11 38 38 H 1.09003 * 109.46427 * 299.99714 * 13 12 11 39 39 H 1.09002 * 109.46995 * 59.99370 * 14 12 11 40 40 H 1.08997 * 109.47676 * 180.02562 * 14 12 11 41 41 H 1.09000 * 109.47374 * 300.00400 * 14 12 11 42 42 H 0.97002 * 119.99799 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7659 1.1377 5 6 3.4741 -1.0795 0.9009 6 1 4.0552 -0.1593 0.8398 7 7 3.6442 -1.8820 -0.3228 8 6 4.1940 -3.0520 0.0614 9 8 4.4687 -3.9529 -0.7066 10 7 4.4051 -3.1096 1.3813 11 6 4.9929 -4.2604 2.0713 12 6 3.8814 -5.2210 2.4986 13 6 2.9175 -4.4985 3.4420 14 6 3.1198 -5.7023 1.2620 15 6 4.4861 -6.4053 3.2079 16 1 5.5561 -6.4664 3.3410 17 6 3.6732 -7.4102 3.6879 18 7 2.3701 -7.3355 3.5263 19 14 4.4226 -8.8777 4.5676 20 1 5.1622 -8.4107 5.7677 21 1 3.3438 -9.8102 4.9823 22 1 5.3577 -9.5793 3.6518 23 6 4.0112 -1.9776 1.9976 24 8 4.0729 -1.7294 3.1827 25 1 -0.3633 0.5568 -0.8637 26 1 -0.3633 0.4696 0.9140 27 1 -0.3633 -1.0265 -0.0504 28 1 1.7043 1.8724 0.9232 29 1 3.0828 1.3433 -0.0709 30 1 1.5898 1.9163 -0.8525 31 1 1.8901 -0.1795 2.0504 32 1 1.4380 -1.6972 1.2378 33 1 3.4061 -1.6195 -1.2258 34 1 5.6795 -4.7752 1.3993 35 1 5.5354 -3.9177 2.9524 36 1 2.4803 -3.6423 2.9286 37 1 2.1259 -5.1830 3.7468 38 1 3.4602 -4.1558 4.3230 39 1 3.8065 -6.2169 0.5899 40 1 2.3276 -6.3863 1.5664 41 1 2.6825 -4.8460 0.7485 42 1 1.7982 -8.0427 3.8636 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924928064.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:28:06 Heat of formation + Delta-G solvation = -33.638336 kcal Electronic energy + Delta-G solvation = -24092.910490 eV Core-core repulsion = 20688.358702 eV Total energy + Delta-G solvation = -3404.551788 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.05131 -38.17410 -37.80940 -36.10917 -35.50466 -33.41036 -30.92520 -29.56478 -27.86355 -26.39975 -25.61641 -25.22296 -24.69566 -22.50332 -21.25703 -20.53679 -18.56748 -17.42991 -16.98896 -16.29599 -15.83732 -15.68240 -15.34799 -14.91018 -14.80363 -14.56645 -14.48978 -13.70150 -13.66059 -13.12923 -12.74310 -12.62642 -12.59420 -12.12939 -12.00050 -11.95903 -11.61946 -11.17755 -11.11411 -10.76297 -10.64166 -10.46138 -10.26147 -10.16522 -10.01856 -9.69708 -9.41189 -9.24267 -8.74880 -8.66163 -8.60929 -8.29555 -5.93939 -4.05164 1.98539 2.70394 3.34459 3.38656 3.40560 3.42423 3.54677 3.69346 4.36630 4.45317 4.61943 4.70896 4.88065 5.10544 5.23437 5.29437 5.32113 5.40283 5.57502 5.58590 5.67043 5.69168 6.14226 6.21939 6.32807 6.49512 6.63246 6.68808 6.88646 7.01319 7.12428 7.14108 7.20578 7.51656 7.59906 7.71071 7.76463 7.81265 8.14330 8.21062 8.45598 8.62255 8.94170 9.59673 11.07071 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.026916 B = 0.004797 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.006397 B = 5835.465960 C = 6004.367789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.018 3.982 4 C 0.055 3.945 5 C 0.098 3.902 6 H 0.117 0.883 7 N -0.719 5.719 8 C 0.699 3.301 9 O -0.537 6.537 10 N -0.561 5.561 11 C 0.127 3.873 12 C 0.054 3.946 13 C -0.122 4.122 14 C -0.120 4.120 15 C -0.507 4.507 16 H 0.056 0.944 17 C 0.068 3.932 18 N -0.884 5.884 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.524 3.476 24 O -0.468 6.468 25 H 0.070 0.930 26 H 0.028 0.972 27 H 0.072 0.928 28 H 0.029 0.971 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.438 0.562 34 H 0.083 0.917 35 H 0.080 0.920 36 H -0.002 1.002 37 H 0.082 0.918 38 H 0.029 0.971 39 H 0.030 0.970 40 H 0.079 0.921 41 H 0.001 0.999 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.105 16.680 -6.624 18.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.130 4.130 4 C -0.074 4.074 5 C -0.012 4.012 6 H 0.134 0.866 7 N -0.385 5.385 8 C 0.400 3.600 9 O -0.410 6.410 10 N -0.305 5.305 11 C 0.008 3.992 12 C 0.053 3.947 13 C -0.180 4.180 14 C -0.178 4.178 15 C -0.545 4.545 16 H 0.075 0.925 17 C -0.134 4.134 18 N -0.522 5.522 19 Si 0.722 3.278 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 C 0.309 3.691 24 O -0.338 6.338 25 H 0.089 0.911 26 H 0.047 0.953 27 H 0.091 0.909 28 H 0.048 0.952 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.283 0.717 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.017 0.983 37 H 0.101 0.899 38 H 0.048 0.952 39 H 0.050 0.950 40 H 0.098 0.902 41 H 0.020 0.980 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.877 15.883 -6.703 17.341 hybrid contribution -0.092 -0.213 0.827 0.859 sum -1.969 15.669 -5.876 16.850 Atomic orbital electron populations 1.22392 0.86413 1.02803 1.00665 1.61874 1.08560 1.13781 1.42560 1.22498 1.00964 0.88715 1.00870 1.22268 0.92892 0.99815 0.92473 1.21968 0.98186 0.96165 0.84925 0.86583 1.45486 1.67315 1.16088 1.09604 1.16025 0.78495 0.83031 0.82420 1.90989 1.55995 1.39188 1.54825 1.46516 1.57446 1.18250 1.08293 1.22239 0.97863 0.83561 0.95521 1.18469 0.91005 0.91901 0.93275 1.21773 1.01101 0.97105 0.98008 1.21736 1.01083 0.98809 0.96147 1.20888 0.93187 1.03961 1.36499 0.92528 1.24869 0.94809 0.97955 0.95758 1.69826 1.02934 1.33360 1.46098 0.86633 0.78732 0.82410 0.80048 1.20308 1.21362 1.20271 1.20550 0.77208 0.82578 0.88774 1.90785 1.52459 1.76485 1.14092 0.91109 0.95347 0.90927 0.95208 0.91231 0.91123 0.92032 0.89255 0.71747 0.89904 0.90174 0.98280 0.89935 0.95197 0.95042 0.90206 0.97964 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.54 60.07 0.57 0.78 16 2 N -0.54 -5.01 4.85 -251.26 -1.22 -6.23 16 3 C 0.02 0.13 9.38 60.07 0.56 0.69 16 4 C 0.05 0.62 4.73 -3.82 -0.02 0.60 16 5 C 0.10 1.20 3.60 -68.20 -0.25 0.95 16 6 H 0.12 1.10 6.93 -51.93 -0.36 0.74 16 7 N -0.72 -9.49 6.15 -59.09 -0.36 -9.86 16 8 C 0.70 12.60 7.06 -87.71 -0.62 11.98 16 9 O -0.54 -11.51 16.32 5.34 0.09 -11.42 16 10 N -0.56 -10.52 2.13 -120.63 -0.26 -10.77 16 11 C 0.13 2.74 4.67 -4.05 -0.02 2.72 16 12 C 0.05 1.35 0.57 -155.66 -0.09 1.26 16 13 C -0.12 -3.01 7.26 37.16 0.27 -2.74 16 14 C -0.12 -3.04 7.12 37.16 0.26 -2.77 16 15 C -0.51 -13.64 8.01 -34.44 -0.28 -13.91 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.07 1.83 5.15 -17.82 -0.09 1.74 16 18 N -0.88 -24.59 9.35 55.43 0.52 -24.07 16 19 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 C 0.52 8.80 5.99 -10.55 -0.06 8.74 16 24 O -0.47 -8.95 16.87 5.59 0.09 -8.85 16 25 H 0.07 0.49 8.13 -51.93 -0.42 0.06 16 26 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.07 0.65 8.06 -51.93 -0.42 0.23 16 28 H 0.03 0.21 8.11 -51.93 -0.42 -0.21 16 29 H 0.07 0.46 6.77 -51.93 -0.35 0.10 16 30 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 31 H 0.06 0.67 8.03 -51.93 -0.42 0.25 16 32 H 0.09 1.19 7.94 -51.93 -0.41 0.77 16 33 H 0.44 4.87 8.96 -40.82 -0.37 4.50 16 34 H 0.08 1.79 7.86 -51.93 -0.41 1.38 16 35 H 0.08 1.68 8.00 -51.93 -0.42 1.27 16 36 H 0.00 -0.04 6.19 -51.93 -0.32 -0.36 16 37 H 0.08 2.23 6.07 -51.93 -0.32 1.91 16 38 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.03 0.81 8.10 -51.93 -0.42 0.39 16 40 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 41 H 0.00 0.03 6.18 -51.93 -0.32 -0.29 16 42 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 331.51 15.07 5.00 5.00 Total: -1.00 -30.79 331.51 -7.41 -38.20 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -6.49 Total: 1.83 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: 0.25 Total: 10.03 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: -1.32 Total: -50.93 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: 0.18 Total: -20.28 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.79 -7.41 -38.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924928064.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.561 kcal (2) G-P(sol) polarization free energy of solvation -30.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds