Wall clock time and date at job start Fri Apr 10 2020 17:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46903 * 110.99863 * 2 1 4 4 C 1.46905 * 110.99911 * 123.94666 * 2 1 3 5 5 C 1.52998 * 109.46932 * 164.21365 * 4 2 1 6 6 H 1.09000 * 110.53713 * 62.37483 * 5 4 2 7 7 N 1.47321 * 110.59894 * 299.54737 * 5 4 2 8 8 C 1.34868 * 106.43689 * 241.51984 * 7 5 4 9 9 O 1.21532 * 123.72425 * 179.97438 * 8 7 5 10 10 N 1.33794 * 112.50365 * 359.86855 * 8 7 5 11 11 C 1.46492 * 124.17933 * 180.12398 * 10 8 7 12 12 C 1.52999 * 109.46988 * 269.95468 * 11 10 8 13 13 C 1.53004 * 109.47327 * 300.00132 * 12 11 10 14 14 C 1.52997 * 109.47316 * 60.00060 * 12 11 10 15 15 C 1.50705 * 109.47064 * 179.97438 * 12 11 10 16 16 H 1.07997 * 120.00038 * 0.02562 * 15 12 11 17 17 C 1.37878 * 119.99886 * 179.97438 * 15 12 11 18 18 N 1.31521 * 119.99981 * 0.02562 * 17 15 12 19 19 Si 1.86795 * 120.00001 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.47233 * 60.00189 * 19 17 15 21 21 H 1.48503 * 109.47486 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47163 * 300.00353 * 19 17 15 23 23 C 1.34774 * 111.64102 * 0.08114 * 10 8 7 24 24 O 1.21241 * 127.15419 * 179.97438 * 23 10 8 25 25 H 1.08998 * 109.47001 * 57.19097 * 1 2 3 26 26 H 1.08993 * 109.47178 * 297.19139 * 1 2 3 27 27 H 1.09004 * 109.46824 * 177.19172 * 1 2 3 28 28 H 1.08996 * 109.47478 * 63.94761 * 3 2 1 29 29 H 1.08999 * 109.47344 * 183.95426 * 3 2 1 30 30 H 1.08999 * 109.46954 * 303.95132 * 3 2 1 31 31 H 1.08993 * 109.47577 * 284.21346 * 4 2 1 32 32 H 1.09000 * 109.46731 * 44.21960 * 4 2 1 33 33 H 0.97001 * 126.69096 * 61.44335 * 7 5 4 34 34 H 1.08999 * 109.47389 * 29.95326 * 11 10 8 35 35 H 1.09001 * 109.47526 * 149.95972 * 11 10 8 36 36 H 1.08991 * 109.46816 * 59.99956 * 13 12 11 37 37 H 1.09000 * 109.47149 * 180.02562 * 13 12 11 38 38 H 1.09003 * 109.46427 * 299.99714 * 13 12 11 39 39 H 1.09002 * 109.46995 * 59.99370 * 14 12 11 40 40 H 1.08997 * 109.47676 * 180.02562 * 14 12 11 41 41 H 1.09000 * 109.47374 * 300.00400 * 14 12 11 42 42 H 0.97002 * 119.99799 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7659 1.1377 5 6 3.4741 -1.0795 0.9009 6 1 4.0552 -0.1593 0.8398 7 7 3.6442 -1.8820 -0.3228 8 6 4.1940 -3.0520 0.0614 9 8 4.4687 -3.9529 -0.7066 10 7 4.4051 -3.1096 1.3813 11 6 4.9929 -4.2604 2.0713 12 6 3.8814 -5.2210 2.4986 13 6 2.9175 -4.4985 3.4420 14 6 3.1198 -5.7023 1.2620 15 6 4.4861 -6.4053 3.2079 16 1 5.5561 -6.4664 3.3410 17 6 3.6732 -7.4102 3.6879 18 7 2.3701 -7.3355 3.5263 19 14 4.4226 -8.8777 4.5676 20 1 5.1622 -8.4107 5.7677 21 1 3.3438 -9.8102 4.9823 22 1 5.3577 -9.5793 3.6518 23 6 4.0112 -1.9776 1.9976 24 8 4.0729 -1.7294 3.1827 25 1 -0.3633 0.5568 -0.8637 26 1 -0.3633 0.4696 0.9140 27 1 -0.3633 -1.0265 -0.0504 28 1 1.7043 1.8724 0.9232 29 1 3.0828 1.3433 -0.0709 30 1 1.5898 1.9163 -0.8525 31 1 1.8901 -0.1795 2.0504 32 1 1.4380 -1.6972 1.2378 33 1 3.4061 -1.6195 -1.2258 34 1 5.6795 -4.7752 1.3993 35 1 5.5354 -3.9177 2.9524 36 1 2.4803 -3.6423 2.9286 37 1 2.1259 -5.1830 3.7468 38 1 3.4602 -4.1558 4.3230 39 1 3.8065 -6.2169 0.5899 40 1 2.3276 -6.3863 1.5664 41 1 2.6825 -4.8460 0.7485 42 1 1.7982 -8.0427 3.8636 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924928064.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:28:05 Heat of formation + Delta-G solvation = -56.160688 kcal Electronic energy + Delta-G solvation = -24093.887133 eV Core-core repulsion = 20688.358702 eV Total energy + Delta-G solvation = -3405.528431 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.42739 -39.58164 -38.81763 -37.81318 -36.87065 -34.99881 -32.85382 -30.59543 -28.45217 -28.04279 -27.67105 -27.16967 -25.93121 -23.70997 -22.31933 -21.93364 -20.31546 -18.79647 -18.42259 -17.87370 -17.43011 -16.73324 -16.67211 -16.30790 -16.14527 -15.74397 -15.65234 -15.15611 -14.96286 -14.70407 -14.47610 -14.09569 -13.76738 -13.26362 -13.18387 -13.07071 -12.73241 -12.68151 -12.60094 -12.56568 -12.38989 -12.25193 -12.20726 -11.97168 -11.79146 -11.43846 -11.13770 -10.76269 -10.52606 -10.38078 -10.25925 -9.37809 -8.01098 -6.18963 0.64443 1.32600 1.46001 1.46577 1.53653 2.10882 2.27234 2.46606 2.78205 3.22145 3.25863 3.66204 3.76758 4.13769 4.24309 4.42635 4.46196 4.49999 4.55312 4.61003 4.64240 4.69576 4.77932 4.81523 4.93844 4.99419 5.06354 5.11855 5.12704 5.15009 5.45921 5.59654 5.64723 5.89106 5.97317 6.02846 6.05029 6.13011 6.25980 6.37739 6.48681 6.85791 7.26093 7.48579 8.98203 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.026916 B = 0.004797 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.006397 B = 5835.465960 C = 6004.367789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.015 3.985 4 C 0.061 3.939 5 C 0.113 3.887 6 H 0.159 0.841 7 N -0.693 5.693 8 C 0.695 3.305 9 O -0.577 6.577 10 N -0.570 5.570 11 C 0.138 3.862 12 C 0.047 3.953 13 C -0.103 4.103 14 C -0.100 4.100 15 C -0.527 4.527 16 H 0.056 0.944 17 C 0.023 3.977 18 N -0.905 5.905 19 Si 0.953 3.047 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.517 3.483 24 O -0.493 6.493 25 H 0.087 0.913 26 H 0.031 0.969 27 H 0.059 0.941 28 H 0.033 0.967 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.452 0.548 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.011 0.989 37 H 0.057 0.943 38 H 0.021 0.979 39 H 0.016 0.984 40 H 0.055 0.945 41 H 0.009 0.991 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.986 18.613 -7.126 20.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.133 4.133 4 C -0.069 4.069 5 C 0.004 3.996 6 H 0.176 0.824 7 N -0.359 5.359 8 C 0.396 3.604 9 O -0.453 6.453 10 N -0.314 5.314 11 C 0.017 3.983 12 C 0.046 3.954 13 C -0.161 4.161 14 C -0.158 4.158 15 C -0.565 4.565 16 H 0.075 0.925 17 C -0.176 4.176 18 N -0.544 5.544 19 Si 0.779 3.221 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.200 1.200 23 C 0.305 3.695 24 O -0.364 6.364 25 H 0.106 0.894 26 H 0.050 0.950 27 H 0.078 0.922 28 H 0.051 0.949 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.299 0.701 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.030 0.970 37 H 0.076 0.924 38 H 0.040 0.960 39 H 0.035 0.965 40 H 0.074 0.926 41 H 0.028 0.972 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.780 17.879 -7.226 19.366 hybrid contribution -0.169 -0.741 0.969 1.231 sum -1.948 17.137 -6.257 18.348 Atomic orbital electron populations 1.22421 0.85868 1.02391 1.01648 1.61881 1.09106 1.15041 1.41170 1.22605 1.01579 0.87376 1.01705 1.22136 0.91538 0.99403 0.93823 1.22082 0.99398 0.96004 0.82115 0.82384 1.45347 1.65496 1.14407 1.10646 1.16150 0.78650 0.83778 0.81806 1.90965 1.57865 1.40898 1.55550 1.46492 1.57836 1.18240 1.08882 1.21821 0.96632 0.84122 0.95754 1.18484 0.91845 0.92310 0.92733 1.21536 1.00117 0.96758 0.97714 1.21496 0.99879 0.98258 0.96121 1.21229 0.93383 1.05034 1.36902 0.92537 1.25578 0.95211 1.00362 0.96460 1.69958 1.03851 1.33942 1.46604 0.85700 0.77982 0.79390 0.79053 1.19720 1.21135 1.19959 1.21263 0.76423 0.82455 0.89344 1.90773 1.53300 1.76887 1.15454 0.89386 0.95006 0.92189 0.94870 0.90260 0.89741 0.91277 0.91626 0.70102 0.90488 0.89929 0.97013 0.92450 0.96019 0.96525 0.92643 0.97184 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.54 127.69 1.22 1.57 16 2 N -0.55 -8.44 4.85 -948.85 -4.61 -13.05 16 3 C 0.01 0.15 9.38 127.69 1.20 1.35 16 4 C 0.06 1.22 4.73 86.30 0.41 1.63 16 5 C 0.11 2.44 3.60 44.37 0.16 2.60 16 6 H 0.16 2.27 6.93 -2.39 -0.02 2.26 16 7 N -0.69 -16.69 6.15 -459.11 -2.82 -19.51 16 8 C 0.70 24.40 7.06 179.33 1.27 25.67 16 9 O -0.58 -24.65 16.32 -3.82 -0.06 -24.72 16 10 N -0.57 -21.03 2.13 -772.82 -1.64 -22.67 16 11 C 0.14 5.95 4.67 86.38 0.40 6.35 16 12 C 0.05 2.37 0.57 -52.93 -0.03 2.34 16 13 C -0.10 -5.16 7.26 71.98 0.52 -4.64 16 14 C -0.10 -5.15 7.12 71.98 0.51 -4.64 16 15 C -0.53 -28.69 8.01 25.60 0.21 -28.49 16 16 H 0.06 3.00 7.74 -2.91 -0.02 2.98 16 17 C 0.02 1.27 5.15 84.65 0.44 1.71 16 18 N -0.90 -51.16 9.35 21.45 0.20 -50.96 16 19 Si 0.95 43.60 29.54 68.60 2.03 45.63 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 21 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 22 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 23 C 0.52 16.65 5.99 87.94 0.53 17.17 16 24 O -0.49 -18.28 16.87 -2.91 -0.05 -18.33 16 25 H 0.09 0.96 8.13 -2.39 -0.02 0.94 16 26 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.06 1.00 8.06 -2.39 -0.02 0.98 16 28 H 0.03 0.34 8.11 -2.39 -0.02 0.32 16 29 H 0.08 0.67 6.77 -2.39 -0.02 0.66 16 30 H 0.08 0.68 8.13 -2.39 -0.02 0.66 16 31 H 0.07 1.32 8.03 -2.39 -0.02 1.30 16 32 H 0.07 1.66 7.94 -2.39 -0.02 1.64 16 33 H 0.45 8.73 8.96 -92.71 -0.83 7.90 16 34 H 0.08 3.38 7.86 -2.39 -0.02 3.37 16 35 H 0.08 3.49 8.00 -2.39 -0.02 3.47 16 36 H 0.01 0.51 6.19 -2.39 -0.01 0.49 16 37 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 38 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.02 0.85 8.10 -2.39 -0.02 0.83 16 40 H 0.05 3.12 6.07 -2.39 -0.01 3.11 16 41 H 0.01 0.45 6.18 -2.39 -0.01 0.44 16 42 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -67.04 331.51 0.06 -66.98 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.19 Total: 14.01 kcal Atomic # 6 Polarization: 15.79 SS G_CDS: 6.83 Total: 22.62 kcal Atomic # 7 Polarization: -97.32 SS G_CDS: -8.87 Total: -106.19 kcal Atomic # 8 Polarization: -42.94 SS G_CDS: -0.11 Total: -43.05 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -67.04 0.06 -66.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924928064.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.817 kcal (2) G-P(sol) polarization free energy of solvation -67.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds