Wall clock time and date at job start Fri Apr 10 2020 17:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47259 * 2 1 4 4 H 1.09004 * 109.59995 * 327.06600 * 3 2 1 5 5 C 1.51395 * 109.60484 * 206.74141 * 3 2 1 6 6 O 1.21285 * 119.88515 * 131.56615 * 5 3 2 7 7 N 1.33614 * 120.23061 * 311.57687 * 5 3 2 8 8 C 1.47242 * 119.84794 * 359.49082 * 7 5 3 9 9 C 1.53112 * 108.39998 * 289.99922 * 8 7 5 10 10 C 1.51682 * 110.75442 * 85.59094 * 9 8 7 11 11 N 1.45752 * 113.93982 * 293.22933 * 10 9 8 12 12 C 1.46902 * 110.99686 * 302.70178 * 11 10 9 13 13 C 1.50699 * 109.47298 * 295.81738 * 12 11 10 14 14 O 1.21280 * 119.99920 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00263 * 179.97438 * 13 12 11 16 16 C 1.46498 * 120.00171 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.47316 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99798 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99868 * 180.02562 * 17 16 15 20 20 N 1.31506 * 120.00309 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99489 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46995 * 90.00470 * 21 19 17 23 23 H 1.48496 * 109.47039 * 209.99720 * 21 19 17 24 24 H 1.48493 * 109.47336 * 330.00203 * 21 19 17 25 25 H 1.08999 * 109.46895 * 299.99778 * 1 2 3 26 26 H 1.08992 * 109.46891 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46781 * 59.99703 * 1 2 3 28 28 H 1.08993 * 109.47148 * 120.00394 * 2 1 3 29 29 H 1.09003 * 109.47526 * 240.00573 * 2 1 3 30 30 H 0.97002 * 120.07171 * 179.50341 * 7 5 3 31 31 H 1.08995 * 109.68377 * 49.72773 * 8 7 5 32 32 H 1.09000 * 109.68130 * 170.23697 * 8 7 5 33 33 H 1.09003 * 109.22206 * 205.91635 * 9 8 7 34 34 H 1.08996 * 109.22180 * 325.30211 * 9 8 7 35 35 H 1.08999 * 108.59167 * 54.38412 * 10 9 8 36 36 H 1.09003 * 108.59160 * 172.22305 * 10 9 8 37 37 H 1.09002 * 109.47395 * 55.82493 * 12 11 10 38 38 H 1.09004 * 109.46803 * 175.81675 * 12 11 10 39 39 H 0.97000 * 119.99659 * 0.02562 * 15 13 12 40 40 H 1.09000 * 109.47071 * 300.00797 * 16 15 13 41 41 H 1.08999 * 109.46794 * 60.00341 * 16 15 13 42 42 H 0.96997 * 120.00143 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3494 2.0745 -0.5583 5 6 3.4102 1.4968 -0.6417 6 8 3.6453 2.3259 -1.4952 7 7 4.3612 0.6345 -0.2713 8 6 4.0783 -0.3646 0.7727 9 6 3.9471 0.3620 2.1140 10 6 2.5327 0.8726 2.3127 11 7 2.1483 1.9268 1.3825 12 6 3.0696 3.0676 1.4700 13 6 2.9704 3.6897 2.8390 14 8 2.2076 3.2278 3.6611 15 7 3.7300 4.7586 3.1503 16 6 3.6330 5.3636 4.4810 17 6 4.5782 6.5339 4.5708 18 1 5.1897 6.8006 3.7214 19 6 4.6624 7.2640 5.7373 20 7 3.9183 6.9390 6.7717 21 14 5.8346 8.7142 5.8488 22 1 5.1344 9.9509 5.4178 23 1 6.2968 8.8704 7.2513 24 1 7.0042 8.4743 4.9659 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.8934 -0.5137 -0.8900 30 1 5.2360 0.6667 -0.6891 31 1 3.1469 -0.8820 0.5429 32 1 4.8952 -1.0844 0.8229 33 1 4.1966 -0.3268 2.9212 34 1 4.6383 1.2045 2.1349 35 1 1.8421 0.0374 2.1959 36 1 2.4418 1.2580 3.3282 37 1 4.0901 2.7245 1.2998 38 1 2.8045 3.8075 0.7146 39 1 4.3403 5.1278 2.4929 40 1 2.6126 5.7072 4.6504 41 1 3.8974 4.6238 5.2365 42 1 3.9772 7.4529 7.5922 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933221183.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:28:15 Heat of formation + Delta-G solvation = -38.912638 kcal Electronic energy + Delta-G solvation = -23536.793266 eV Core-core repulsion = 20132.012767 eV Total energy + Delta-G solvation = -3404.780499 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.49390 -38.79597 -37.49340 -35.17341 -34.19655 -33.41906 -32.34643 -31.55486 -28.55903 -27.10501 -26.41684 -24.63776 -23.51188 -22.28706 -20.48938 -19.92036 -19.37450 -17.51272 -17.48947 -17.07931 -16.11897 -15.78497 -15.20212 -15.00433 -14.76592 -14.51428 -14.15897 -14.07749 -13.81925 -13.32556 -13.23154 -12.83868 -12.76641 -12.34652 -12.17861 -12.00492 -11.94350 -11.69897 -11.56917 -11.23124 -11.01347 -10.96115 -10.78606 -10.30611 -10.24589 -10.08874 -9.39548 -9.26374 -8.99242 -8.72940 -8.27295 -7.85914 -6.16673 -4.23414 2.38879 3.04471 3.24722 3.30785 3.33112 3.35935 3.59099 4.15415 4.27947 4.43214 4.43782 4.61271 4.72202 4.80362 4.95822 5.08315 5.18884 5.19895 5.27961 5.34529 5.46124 5.50523 5.53262 5.60357 5.63859 5.73057 5.81636 5.98878 6.10645 6.30407 6.52846 6.82195 6.97808 7.09300 7.31114 7.44902 7.51793 7.67521 7.97093 8.01474 8.62943 8.78641 9.10729 9.43365 10.93518 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.027515 B = 0.003798 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.365966 B = 7369.602833 C = 7654.747617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.148 4.148 3 C 0.071 3.929 4 H 0.118 0.882 5 C 0.491 3.509 6 O -0.547 6.547 7 N -0.724 5.724 8 C 0.075 3.925 9 C -0.182 4.182 10 C 0.025 3.975 11 N -0.491 5.491 12 C 0.025 3.975 13 C 0.503 3.497 14 O -0.539 6.539 15 N -0.713 5.713 16 C 0.252 3.748 17 C -0.544 4.544 18 H 0.063 0.937 19 C 0.064 3.936 20 N -0.886 5.886 21 Si 0.903 3.097 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.273 1.273 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.104 0.896 29 H 0.069 0.931 30 H 0.398 0.602 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.063 0.937 38 H 0.102 0.898 39 H 0.390 0.610 40 H 0.027 0.973 41 H 0.026 0.974 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.230 -17.566 -13.191 22.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.185 4.185 3 C -0.040 4.040 4 H 0.136 0.864 5 C 0.275 3.725 6 O -0.423 6.423 7 N -0.378 5.378 8 C -0.048 4.048 9 C -0.222 4.222 10 C -0.102 4.102 11 N -0.214 5.214 12 C -0.106 4.106 13 C 0.287 3.713 14 O -0.417 6.417 15 N -0.362 5.362 16 C 0.131 3.869 17 C -0.582 4.582 18 H 0.081 0.919 19 C -0.139 4.139 20 N -0.523 5.523 21 Si 0.730 3.270 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.198 1.198 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.122 0.878 29 H 0.087 0.913 30 H 0.234 0.766 31 H 0.121 0.879 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.131 0.869 37 H 0.081 0.919 38 H 0.120 0.880 39 H 0.222 0.778 40 H 0.045 0.955 41 H 0.044 0.956 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.365 -17.229 -12.596 21.473 hybrid contribution 2.265 0.790 -0.579 2.468 sum -0.100 -16.440 -13.175 21.068 Atomic orbital electron populations 1.21778 0.94211 1.01705 1.02993 1.22464 0.97920 0.94561 1.03558 1.22550 0.92614 0.98528 0.90309 0.86435 1.21789 0.88390 0.80237 0.82098 1.90754 1.82236 1.36748 1.32563 1.46088 1.15661 1.34967 1.41049 1.22601 1.04177 0.91004 0.87013 1.22464 1.00521 1.01708 0.97476 1.22223 0.93543 0.94593 0.99881 1.61563 1.49289 1.07205 1.03387 1.22178 0.95786 0.94562 0.98050 1.20127 0.81312 0.81412 0.88427 1.90593 1.38274 1.62326 1.50514 1.46454 1.41282 1.30266 1.18188 1.19089 0.97618 0.92539 0.77622 1.21237 1.23853 1.13696 0.99419 0.91929 1.24938 0.95949 0.97728 0.95322 1.69968 1.39094 1.39912 1.03332 0.86423 0.80841 0.82286 0.77417 1.20417 1.21002 1.19765 0.91239 0.92633 0.92613 0.87838 0.91283 0.76556 0.87868 0.89707 0.89551 0.90946 0.89686 0.86896 0.91940 0.87951 0.77783 0.95470 0.95588 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.77 37.16 0.36 -0.82 16 2 C -0.15 -1.21 3.49 -26.73 -0.09 -1.30 16 3 C 0.07 0.81 2.75 -68.53 -0.19 0.62 16 4 H 0.12 1.42 7.86 -51.93 -0.41 1.01 16 5 C 0.49 6.12 4.60 -11.16 -0.05 6.07 16 6 O -0.55 -8.96 17.92 5.55 0.10 -8.86 16 7 N -0.72 -6.84 5.20 -59.76 -0.31 -7.15 16 8 C 0.08 0.54 6.41 -3.58 -0.02 0.52 16 9 C -0.18 -1.75 5.45 -27.34 -0.15 -1.89 16 10 C 0.02 0.30 4.74 -5.11 -0.02 0.27 16 11 N -0.49 -6.62 4.57 -230.87 -1.06 -7.68 16 12 C 0.03 0.39 4.21 -4.98 -0.02 0.37 16 13 C 0.50 9.99 7.57 -10.99 -0.08 9.91 16 14 O -0.54 -12.39 14.12 5.56 0.08 -12.31 16 15 N -0.71 -15.18 5.55 -61.47 -0.34 -15.52 16 16 C 0.25 6.68 5.43 -5.20 -0.03 6.65 16 17 C -0.54 -14.85 9.28 -34.44 -0.32 -15.17 16 18 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 19 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 20 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 21 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 22 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.44 8.12 -51.93 -0.42 0.01 16 28 H 0.10 0.75 2.77 -51.93 -0.14 0.61 16 29 H 0.07 0.51 7.66 -51.93 -0.40 0.11 16 30 H 0.40 3.41 8.92 -40.82 -0.36 3.04 16 31 H 0.10 0.63 3.70 -51.93 -0.19 0.44 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.86 6.22 -51.93 -0.32 0.54 16 35 H 0.09 0.82 5.45 -51.93 -0.28 0.54 16 36 H 0.11 1.77 5.67 -51.93 -0.29 1.48 16 37 H 0.06 0.92 5.17 -51.93 -0.27 0.65 16 38 H 0.10 1.58 8.08 -51.93 -0.42 1.16 16 39 H 0.39 7.34 8.32 -40.82 -0.34 7.00 16 40 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 323.37 15.07 4.87 4.87 Total: -1.00 -33.51 323.37 -7.58 -41.09 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -5.93 Total: 8.03 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: -0.72 Total: 6.92 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -0.97 Total: -55.70 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: 0.18 Total: -21.17 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.51 -7.58 -41.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933221183.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.182 kcal (2) G-P(sol) polarization free energy of solvation -33.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds