Wall clock time and date at job start Fri Apr 10 2020 17:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47259 * 2 1 4 4 H 1.09004 * 109.59995 * 327.06600 * 3 2 1 5 5 C 1.51395 * 109.60484 * 206.74141 * 3 2 1 6 6 O 1.21285 * 119.88515 * 131.56615 * 5 3 2 7 7 N 1.33614 * 120.23061 * 311.57687 * 5 3 2 8 8 C 1.47242 * 119.84794 * 359.49082 * 7 5 3 9 9 C 1.53112 * 108.39998 * 289.99922 * 8 7 5 10 10 C 1.51682 * 110.75442 * 85.59094 * 9 8 7 11 11 N 1.45752 * 113.93982 * 293.22933 * 10 9 8 12 12 C 1.46902 * 110.99686 * 302.70178 * 11 10 9 13 13 C 1.50699 * 109.47298 * 295.81738 * 12 11 10 14 14 O 1.21280 * 119.99920 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00263 * 179.97438 * 13 12 11 16 16 C 1.46498 * 120.00171 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.47316 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99798 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99868 * 180.02562 * 17 16 15 20 20 N 1.31506 * 120.00309 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99489 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46995 * 90.00470 * 21 19 17 23 23 H 1.48496 * 109.47039 * 209.99720 * 21 19 17 24 24 H 1.48493 * 109.47336 * 330.00203 * 21 19 17 25 25 H 1.08999 * 109.46895 * 299.99778 * 1 2 3 26 26 H 1.08992 * 109.46891 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46781 * 59.99703 * 1 2 3 28 28 H 1.08993 * 109.47148 * 120.00394 * 2 1 3 29 29 H 1.09003 * 109.47526 * 240.00573 * 2 1 3 30 30 H 0.97002 * 120.07171 * 179.50341 * 7 5 3 31 31 H 1.08995 * 109.68377 * 49.72773 * 8 7 5 32 32 H 1.09000 * 109.68130 * 170.23697 * 8 7 5 33 33 H 1.09003 * 109.22206 * 205.91635 * 9 8 7 34 34 H 1.08996 * 109.22180 * 325.30211 * 9 8 7 35 35 H 1.08999 * 108.59167 * 54.38412 * 10 9 8 36 36 H 1.09003 * 108.59160 * 172.22305 * 10 9 8 37 37 H 1.09002 * 109.47395 * 55.82493 * 12 11 10 38 38 H 1.09004 * 109.46803 * 175.81675 * 12 11 10 39 39 H 0.97000 * 119.99659 * 0.02562 * 15 13 12 40 40 H 1.09000 * 109.47071 * 300.00797 * 16 15 13 41 41 H 1.08999 * 109.46794 * 60.00341 * 16 15 13 42 42 H 0.96997 * 120.00143 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3494 2.0745 -0.5583 5 6 3.4102 1.4968 -0.6417 6 8 3.6453 2.3259 -1.4952 7 7 4.3612 0.6345 -0.2713 8 6 4.0783 -0.3646 0.7727 9 6 3.9471 0.3620 2.1140 10 6 2.5327 0.8726 2.3127 11 7 2.1483 1.9268 1.3825 12 6 3.0696 3.0676 1.4700 13 6 2.9704 3.6897 2.8390 14 8 2.2076 3.2278 3.6611 15 7 3.7300 4.7586 3.1503 16 6 3.6330 5.3636 4.4810 17 6 4.5782 6.5339 4.5708 18 1 5.1897 6.8006 3.7214 19 6 4.6624 7.2640 5.7373 20 7 3.9183 6.9390 6.7717 21 14 5.8346 8.7142 5.8488 22 1 5.1344 9.9509 5.4178 23 1 6.2968 8.8704 7.2513 24 1 7.0042 8.4743 4.9659 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.8934 -0.5137 -0.8900 30 1 5.2360 0.6667 -0.6891 31 1 3.1469 -0.8820 0.5429 32 1 4.8952 -1.0844 0.8229 33 1 4.1966 -0.3268 2.9212 34 1 4.6383 1.2045 2.1349 35 1 1.8421 0.0374 2.1959 36 1 2.4418 1.2580 3.3282 37 1 4.0901 2.7245 1.2998 38 1 2.8045 3.8075 0.7146 39 1 4.3403 5.1278 2.4929 40 1 2.6126 5.7072 4.6504 41 1 3.8974 4.6238 5.2365 42 1 3.9772 7.4529 7.5922 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933221183.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:28:14 Heat of formation + Delta-G solvation = -67.352644 kcal Electronic energy + Delta-G solvation = -23538.026517 eV Core-core repulsion = 20132.012767 eV Total energy + Delta-G solvation = -3406.013750 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.46649 -40.37831 -38.60466 -36.26056 -35.91702 -34.39695 -34.29074 -32.51199 -30.13244 -28.40956 -27.57756 -25.69802 -24.71183 -23.85686 -21.49137 -21.28168 -20.51011 -18.94410 -18.43750 -18.38333 -17.57444 -17.18509 -16.69903 -16.52636 -16.16618 -15.68564 -15.52677 -15.07002 -14.80304 -14.47762 -14.38972 -14.17293 -13.96084 -13.81352 -13.53022 -13.23644 -13.03292 -12.93288 -12.79897 -12.70352 -12.49145 -12.24824 -11.97517 -11.88240 -11.50131 -11.13266 -10.96861 -10.81534 -10.65402 -10.04427 -9.83932 -9.34273 -8.30740 -6.47241 1.41274 1.42124 1.43919 1.55084 1.70777 2.16917 2.26978 2.41756 3.00516 3.04040 3.37335 3.62652 3.81873 3.92000 3.92725 4.07395 4.11233 4.24284 4.32186 4.40890 4.50809 4.63291 4.74357 4.78321 4.91415 5.06744 5.08107 5.10974 5.14889 5.23366 5.34497 5.46842 5.49604 5.63012 5.70818 5.83325 5.88617 6.04310 6.18871 6.62913 6.87329 7.12477 7.21654 7.44590 8.81328 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.027515 B = 0.003798 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.365966 B = 7369.602833 C = 7654.747617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C 0.074 3.926 4 H 0.107 0.893 5 C 0.489 3.511 6 O -0.592 6.592 7 N -0.713 5.713 8 C 0.079 3.921 9 C -0.177 4.177 10 C 0.024 3.976 11 N -0.505 5.505 12 C 0.044 3.956 13 C 0.503 3.497 14 O -0.571 6.571 15 N -0.711 5.711 16 C 0.271 3.729 17 C -0.559 4.559 18 H 0.080 0.920 19 C 0.007 3.993 20 N -0.928 5.928 21 Si 0.983 3.017 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.258 1.258 25 H 0.050 0.950 26 H 0.076 0.924 27 H 0.053 0.947 28 H 0.117 0.883 29 H 0.087 0.913 30 H 0.405 0.595 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.105 0.895 34 H 0.047 0.953 35 H 0.113 0.887 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.404 0.596 40 H -0.012 1.012 41 H -0.008 1.008 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.089 -18.991 -14.682 24.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C -0.037 4.037 4 H 0.125 0.875 5 C 0.273 3.727 6 O -0.472 6.472 7 N -0.365 5.365 8 C -0.044 4.044 9 C -0.217 4.217 10 C -0.103 4.103 11 N -0.229 5.229 12 C -0.087 4.087 13 C 0.289 3.711 14 O -0.451 6.451 15 N -0.361 5.361 16 C 0.148 3.852 17 C -0.597 4.597 18 H 0.098 0.902 19 C -0.193 4.193 20 N -0.567 5.567 21 Si 0.806 3.194 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.182 1.182 25 H 0.070 0.930 26 H 0.095 0.905 27 H 0.072 0.928 28 H 0.134 0.866 29 H 0.106 0.894 30 H 0.242 0.758 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.123 0.877 34 H 0.066 0.934 35 H 0.131 0.869 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.122 0.878 39 H 0.239 0.761 40 H 0.006 0.994 41 H 0.010 0.990 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.027 -18.706 -14.111 23.454 hybrid contribution 1.783 1.143 -0.079 2.119 sum 0.756 -17.563 -14.190 22.591 Atomic orbital electron populations 1.21764 0.93979 1.02763 1.02047 1.22478 0.98039 0.92269 1.04945 1.22563 0.92248 1.00506 0.88410 0.87508 1.21926 0.89057 0.80088 0.81592 1.90736 1.82985 1.38738 1.34739 1.46106 1.15303 1.34358 1.40683 1.22797 1.06660 0.90404 0.84494 1.22422 0.97929 1.01453 0.99937 1.22196 0.96080 0.94731 0.97265 1.61478 1.48990 1.07365 1.05077 1.21937 0.97110 0.95377 0.94290 1.20911 0.79911 0.80427 0.89860 1.90586 1.39409 1.63013 1.52098 1.46224 1.42308 1.30864 1.16738 1.18523 0.95344 0.91932 0.79406 1.21609 1.24041 1.13814 1.00247 0.90244 1.26013 0.97657 1.00893 0.94715 1.70120 1.40906 1.41524 1.04134 0.85188 0.78569 0.77984 0.77673 1.19671 1.20656 1.18156 0.93042 0.90547 0.92787 0.86565 0.89440 0.75813 0.86064 0.86237 0.87659 0.93403 0.86940 0.91054 0.90730 0.87779 0.76133 0.99409 0.99042 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.77 71.98 0.70 -1.32 16 2 C -0.14 -1.89 3.49 30.59 0.11 -1.79 16 3 C 0.07 1.58 2.75 44.39 0.12 1.71 16 4 H 0.11 2.54 7.86 -2.39 -0.02 2.52 16 5 C 0.49 11.45 4.60 88.06 0.41 11.86 16 6 O -0.59 -19.03 17.92 -3.05 -0.05 -19.09 16 7 N -0.71 -11.55 5.20 -462.01 -2.40 -13.96 16 8 C 0.08 0.82 6.41 86.27 0.55 1.37 16 9 C -0.18 -3.04 5.45 30.20 0.16 -2.87 16 10 C 0.02 0.56 4.74 86.09 0.41 0.97 16 11 N -0.50 -13.45 4.57 -884.33 -4.04 -17.49 16 12 C 0.04 1.36 4.21 85.56 0.36 1.72 16 13 C 0.50 20.70 7.57 87.66 0.66 21.36 16 14 O -0.57 -27.62 14.12 -3.03 -0.04 -27.66 16 15 N -0.71 -31.31 5.55 -466.80 -2.59 -33.90 16 16 C 0.27 15.06 5.43 85.63 0.46 15.52 16 17 C -0.56 -31.01 9.28 25.60 0.24 -30.77 16 18 H 0.08 4.04 7.60 -2.91 -0.02 4.02 16 19 C 0.01 0.40 5.46 84.66 0.46 0.86 16 20 N -0.93 -56.13 13.29 21.45 0.28 -55.85 16 21 Si 0.98 42.84 29.54 68.60 2.03 44.86 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 23 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 25 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.05 0.76 8.12 -2.38 -0.02 0.74 16 28 H 0.12 1.24 2.77 -2.39 -0.01 1.24 16 29 H 0.09 0.93 7.66 -2.39 -0.02 0.91 16 30 H 0.40 5.85 8.92 -92.71 -0.83 5.02 16 31 H 0.12 0.90 3.70 -2.39 -0.01 0.89 16 32 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.11 1.43 8.14 -2.39 -0.02 1.42 16 34 H 0.05 1.07 6.22 -2.39 -0.01 1.06 16 35 H 0.11 1.93 5.45 -2.39 -0.01 1.91 16 36 H 0.07 2.30 5.67 -2.39 -0.01 2.29 16 37 H 0.08 2.16 5.17 -2.39 -0.01 2.14 16 38 H 0.10 3.23 8.08 -2.39 -0.02 3.21 16 39 H 0.40 15.37 8.32 -92.71 -0.77 14.60 16 40 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 41 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 42 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -76.46 323.37 -2.70 -79.17 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: -0.53 Total: 25.29 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: 4.65 Total: 18.62 kcal Atomic # 7 Polarization: -112.44 SS G_CDS: -8.75 Total: -121.19 kcal Atomic # 8 Polarization: -46.65 SS G_CDS: -0.10 Total: -46.75 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -76.46 -2.70 -79.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933221183.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.814 kcal (2) G-P(sol) polarization free energy of solvation -76.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds