Wall clock time and date at job start Fri Apr 10 2020 17:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36934 * 120.00159 * 2 1 4 4 H 1.08001 * 120.00167 * 204.57511 * 3 2 1 5 5 C 1.38812 * 120.00189 * 24.56989 * 3 2 1 6 6 N 1.31618 * 119.99792 * 10.83078 * 5 3 2 7 7 Si 1.86793 * 120.00180 * 190.82933 * 5 3 2 8 8 H 1.48504 * 109.46903 * 60.00331 * 7 5 3 9 9 H 1.48504 * 109.47280 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47435 * 300.00258 * 7 5 3 11 11 C 1.46500 * 119.99841 * 179.97438 * 2 1 3 12 12 H 1.09004 * 110.64093 * 176.86158 * 11 2 1 13 13 C 1.55160 * 110.87629 * 53.61115 * 11 2 1 14 14 C 1.55132 * 101.48682 * 205.89815 * 13 11 2 15 15 N 1.47426 * 104.72069 * 37.29585 * 14 13 11 16 16 C 1.34776 * 125.64503 * 155.81860 * 15 14 13 17 17 O 1.21278 * 119.99804 * 184.91599 * 16 15 14 18 18 C 1.50693 * 120.00113 * 4.92060 * 16 15 14 19 19 C 1.53002 * 109.47327 * 55.44178 * 18 16 15 20 20 C 1.53005 * 109.47286 * 175.44073 * 18 16 15 21 21 C 1.50697 * 109.47285 * 295.44084 * 18 16 15 22 22 N 1.34777 * 120.00318 * 180.02562 * 21 18 16 23 23 O 1.21285 * 119.99979 * 0.02562 * 21 18 16 24 24 C 1.47024 * 108.70236 * 335.54899 * 15 14 13 25 25 H 1.09004 * 109.46957 * 266.64932 * 1 2 3 26 26 H 1.08996 * 109.46740 * 26.65045 * 1 2 3 27 27 H 1.09003 * 109.46901 * 146.64805 * 1 2 3 28 28 H 0.97002 * 119.99934 * 179.97438 * 6 5 3 29 29 H 1.09002 * 110.99836 * 324.13731 * 13 11 2 30 30 H 1.08994 * 111.00404 * 87.94770 * 13 11 2 31 31 H 1.08995 * 110.49375 * 278.45059 * 14 13 11 32 32 H 1.09002 * 110.34093 * 156.05691 * 14 13 11 33 33 H 1.08998 * 109.47068 * 173.46846 * 19 18 16 34 34 H 1.09005 * 109.47090 * 293.46013 * 19 18 16 35 35 H 1.08995 * 109.47210 * 53.46427 * 19 18 16 36 36 H 1.08999 * 109.46834 * 299.99785 * 20 18 16 37 37 H 1.09000 * 109.46641 * 59.99676 * 20 18 16 38 38 H 1.08997 * 109.46901 * 179.97438 * 20 18 16 39 39 H 0.96998 * 119.99981 * 359.97438 * 22 21 18 40 40 H 0.96996 * 119.99818 * 180.02562 * 22 21 18 41 41 H 1.09004 * 109.88074 * 120.71151 * 24 15 14 42 42 H 1.09005 * 109.88057 * 241.71358 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1563 1.2282 -0.3890 5 6 1.5500 2.3336 0.4998 6 7 0.4171 2.2481 1.1644 7 14 2.3507 3.9994 0.2294 8 1 2.4681 4.2615 -1.2276 9 1 1.5176 5.0568 0.8564 10 1 3.7027 4.0044 0.8438 11 6 2.1975 -1.2687 0.0006 12 1 3.2717 -1.0923 -0.0554 13 6 1.7290 -2.1781 -1.1661 14 6 2.0621 -3.5882 -0.6116 15 7 1.7542 -3.5070 0.8279 16 6 1.4460 -4.5490 1.6252 17 8 1.1229 -4.3556 2.7780 18 6 1.5031 -5.9543 1.0842 19 6 2.8939 -6.2220 0.5053 20 6 1.2211 -6.9474 2.2135 21 6 0.4682 -6.1181 0.0011 22 7 0.3353 -7.3012 -0.6307 23 8 -0.2452 -5.1853 -0.3020 24 6 1.8455 -2.1019 1.2510 25 1 -0.3633 -0.0601 1.0260 26 1 -0.3633 0.9185 -0.4609 27 1 -0.3633 -0.8585 -0.5650 28 1 -0.0018 3.0501 1.5140 29 1 0.6592 -2.0668 -1.3428 30 1 2.2963 -1.9725 -2.0737 31 1 3.1170 -3.8178 -0.7616 32 1 1.4370 -4.3413 -1.0913 33 1 2.9729 -7.2710 0.2200 34 1 3.0491 -5.5941 -0.3722 35 1 3.6502 -5.9914 1.2555 36 1 1.9697 -6.8290 2.9968 37 1 0.2303 -6.7567 2.6259 38 1 1.2619 -7.9639 1.8220 39 1 0.9060 -8.0471 -0.3885 40 1 -0.3307 -7.4064 -1.3280 41 1 0.8886 -1.7743 1.6574 42 1 2.6254 -1.9915 2.0045 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971724316.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:28:20 Heat of formation + Delta-G solvation = -69.000362 kcal Electronic energy + Delta-G solvation = -23881.358916 eV Core-core repulsion = 20475.273716 eV Total energy + Delta-G solvation = -3406.085201 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.09910 -40.05721 -38.95714 -36.58843 -35.97533 -34.17597 -33.34207 -31.25017 -29.65889 -28.17921 -28.02509 -26.10343 -24.70917 -23.95710 -22.20242 -20.86759 -20.00389 -19.06477 -18.89677 -17.83911 -17.36973 -17.27011 -16.58510 -16.30798 -15.98738 -15.57429 -15.24395 -15.12201 -14.69624 -14.43299 -14.17307 -13.88036 -13.53155 -13.36411 -13.28572 -13.19405 -13.12985 -12.90826 -12.71089 -12.60642 -12.41334 -12.26437 -12.13413 -12.08080 -11.78613 -11.45467 -11.06133 -10.85125 -10.66178 -10.61199 -9.63302 -8.82364 -7.86403 -5.37228 1.39810 1.47521 1.50686 1.51414 1.57387 1.94104 2.50785 2.55294 3.21633 3.29448 3.55060 3.74620 3.80615 3.84190 3.89618 4.11673 4.23816 4.30578 4.40579 4.60064 4.65865 4.71174 4.75712 4.79667 4.81764 4.85250 5.02150 5.12477 5.16337 5.18443 5.25295 5.28823 5.41588 5.59531 5.64024 5.86709 6.30512 6.36606 6.55958 7.05377 7.10601 7.27878 7.79978 8.28330 9.19073 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.033842 B = 0.004205 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.164187 B = 6657.063779 C = 6776.204669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.600 5.600 3 C -0.269 4.269 4 H 0.083 0.917 5 C -0.054 4.054 6 N -0.943 5.943 7 Si 0.978 3.022 8 H -0.273 1.273 9 H -0.298 1.298 10 H -0.272 1.272 11 C 0.168 3.832 12 H 0.092 0.908 13 C -0.140 4.140 14 C 0.102 3.898 15 N -0.597 5.597 16 C 0.533 3.467 17 O -0.592 6.592 18 C -0.095 4.095 19 C -0.146 4.146 20 C -0.124 4.124 21 C 0.529 3.471 22 N -0.819 5.819 23 O -0.576 6.576 24 C 0.097 3.903 25 H -0.017 1.017 26 H 0.034 0.966 27 H 0.020 0.980 28 H 0.248 0.752 29 H 0.054 0.946 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.041 0.959 38 H 0.115 0.885 39 H 0.421 0.579 40 H 0.413 0.587 41 H 0.023 0.977 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.887 -24.796 -7.191 26.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.321 5.321 3 C -0.399 4.399 4 H 0.100 0.900 5 C -0.249 4.249 6 N -0.589 5.589 7 Si 0.805 3.195 8 H -0.199 1.199 9 H -0.225 1.225 10 H -0.198 1.198 11 C 0.059 3.941 12 H 0.110 0.890 13 C -0.180 4.180 14 C -0.020 4.020 15 N -0.329 5.329 16 C 0.322 3.678 17 O -0.473 6.473 18 C -0.101 4.101 19 C -0.203 4.203 20 C -0.181 4.181 21 C 0.313 3.687 22 N -0.384 5.384 23 O -0.456 6.456 24 C -0.029 4.029 25 H 0.001 0.999 26 H 0.052 0.948 27 H 0.038 0.962 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.107 0.893 33 H 0.136 0.864 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.060 0.940 38 H 0.133 0.867 39 H 0.254 0.746 40 H 0.246 0.754 41 H 0.042 0.958 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.243 -23.924 -6.558 25.580 hybrid contribution -0.451 1.205 0.519 1.387 sum 5.792 -22.719 -6.040 24.211 Atomic orbital electron populations 1.20406 0.83419 0.96650 0.95786 1.44074 1.01666 1.01239 1.85102 1.19653 0.99882 0.86467 1.33917 0.89967 1.25974 0.98497 1.02601 0.97842 1.70273 1.20783 1.28188 1.39700 0.85187 0.77619 0.78680 0.77986 1.19855 1.22485 1.19788 1.21577 0.96509 0.84668 0.91300 0.89039 1.23214 1.01731 0.93746 0.99270 1.22795 1.01732 0.98502 0.78924 1.48378 1.67064 1.06195 1.11214 1.20493 0.75555 0.86907 0.84832 1.90657 1.49924 1.86326 1.20418 1.21121 0.99516 0.92282 0.97220 1.22130 0.90256 1.05786 1.02103 1.21727 1.02385 0.97914 0.96095 1.20171 0.83194 0.83426 0.81957 1.43497 1.41689 1.12502 1.40731 1.90862 1.46701 1.41547 1.66458 1.22503 0.99277 0.81284 0.99816 0.99903 0.94767 0.96218 0.94265 0.92703 0.87848 0.87930 0.89300 0.86413 0.90574 0.90710 0.90896 0.94009 0.86683 0.74620 0.75401 0.95813 0.93140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 10.00 8.02 127.77 1.02 11.03 16 2 N -0.60 -31.45 2.93 -696.14 -2.04 -33.49 16 3 C -0.27 -14.98 9.60 84.03 0.81 -14.17 16 4 H 0.08 4.26 7.84 -2.91 -0.02 4.24 16 5 C -0.05 -3.11 5.09 84.86 0.43 -2.68 16 6 N -0.94 -58.59 10.74 21.65 0.23 -58.35 16 7 Si 0.98 45.68 29.57 68.60 2.03 47.70 16 8 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 9 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 C 0.17 7.06 3.43 46.18 0.16 7.22 16 12 H 0.09 3.56 7.94 -2.38 -0.02 3.54 16 13 C -0.14 -4.75 6.63 32.07 0.21 -4.54 16 14 C 0.10 2.85 4.70 86.93 0.41 3.26 16 15 N -0.60 -21.58 3.14 -811.35 -2.55 -24.13 16 16 C 0.53 19.03 5.99 87.66 0.53 19.55 16 17 O -0.59 -26.63 16.32 -3.02 -0.05 -26.68 16 18 C -0.09 -2.04 0.60 -53.67 -0.03 -2.07 16 19 C -0.15 -1.77 8.00 71.98 0.58 -1.19 16 20 C -0.12 -2.16 7.67 71.98 0.55 -1.61 16 21 C 0.53 11.45 5.45 87.66 0.48 11.93 16 22 N -0.82 -7.58 8.67 -173.53 -1.50 -9.08 16 23 O -0.58 -19.31 14.70 -3.04 -0.04 -19.36 16 24 C 0.10 4.28 6.51 86.73 0.56 4.85 16 25 H -0.02 -1.07 7.41 -2.38 -0.02 -1.08 16 26 H 0.03 1.98 6.81 -2.39 -0.02 1.97 16 27 H 0.02 0.98 6.01 -2.39 -0.01 0.97 16 28 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 29 H 0.05 2.15 6.02 -2.39 -0.01 2.14 16 30 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 31 H 0.10 2.07 6.99 -2.39 -0.02 2.05 16 32 H 0.09 2.36 4.70 -2.39 -0.01 2.35 16 33 H 0.12 0.35 7.75 -2.39 -0.02 0.33 16 34 H 0.08 0.94 4.99 -2.38 -0.01 0.93 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.04 0.97 8.05 -2.39 -0.02 0.95 16 38 H 0.11 0.79 7.56 -2.39 -0.02 0.77 16 39 H 0.42 0.48 7.80 -92.71 -0.72 -0.25 16 40 H 0.41 3.15 8.93 -92.71 -0.83 2.32 16 41 H 0.02 1.26 6.93 -2.38 -0.02 1.25 16 42 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 Total: -1.00 -85.37 325.66 1.28 -84.09 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -0.49 Total: 7.73 kcal Atomic # 6 Polarization: 25.86 SS G_CDS: 5.71 Total: 31.57 kcal Atomic # 7 Polarization: -119.19 SS G_CDS: -5.86 Total: -125.05 kcal Atomic # 8 Polarization: -45.95 SS G_CDS: -0.09 Total: -46.04 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Total: -85.37 1.28 -84.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971724316.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.091 kcal (2) G-P(sol) polarization free energy of solvation -85.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds