Wall clock time and date at job start Fri Apr 10 2020 17:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09000 * 109.49911 * 305.00237 * 3 2 1 5 5 C 1.53194 * 109.49798 * 65.06470 * 3 2 1 6 6 N 1.46931 * 108.77440 * 174.55497 * 5 3 2 7 7 C 1.34780 * 120.60344 * 126.42414 * 6 5 3 8 8 O 1.21272 * 120.00211 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.99670 * 180.02562 * 7 6 5 10 10 C 1.50697 * 109.46614 * 179.97438 * 9 7 6 11 11 N 1.34781 * 119.99366 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00365 * 359.97438 * 10 9 7 13 13 C 1.46931 * 118.76555 * 306.44689 * 6 5 3 14 14 C 1.53181 * 108.77555 * 53.58363 * 13 6 5 15 15 C 1.53039 * 109.31629 * 305.36668 * 14 13 6 16 16 H 1.08992 * 109.46104 * 301.34336 * 15 14 13 17 17 N 1.46501 * 109.46153 * 181.38437 * 15 14 13 18 18 C 1.36932 * 120.00046 * 84.93563 * 17 15 14 19 19 H 1.08004 * 120.00081 * 359.97438 * 18 17 15 20 20 C 1.38814 * 120.00297 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99824 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00042 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47102 * 60.00240 * 22 20 18 24 24 H 1.48503 * 109.46876 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47491 * 299.99831 * 22 20 18 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 31 31 H 1.08998 * 109.58469 * 294.37538 * 5 3 2 32 32 H 1.09004 * 109.58890 * 54.79996 * 5 3 2 33 33 H 1.09001 * 109.46601 * 299.99374 * 9 7 6 34 34 H 1.08994 * 109.47651 * 59.99579 * 9 7 6 35 35 H 0.96996 * 120.00439 * 0.02562 * 11 10 9 36 36 H 0.97006 * 119.99652 * 179.97438 * 11 10 9 37 37 H 1.09004 * 109.58081 * 293.79999 * 13 6 5 38 38 H 1.08996 * 109.70188 * 173.44487 * 13 6 5 39 39 H 1.09006 * 109.50065 * 185.41362 * 14 13 6 40 40 H 1.09001 * 109.49768 * 65.32094 * 14 13 6 41 41 H 0.96998 * 119.99848 * 264.93324 * 17 15 14 42 42 H 0.97002 * 120.00180 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6057 1.9819 -0.8416 5 6 1.6365 2.1274 1.3095 6 7 2.2438 3.4648 1.3502 7 6 1.4841 4.5570 1.5660 8 8 0.2880 4.4412 1.7292 9 6 2.1212 5.9222 1.6045 10 6 1.0620 6.9637 1.8585 11 7 1.4019 8.2657 1.9346 12 8 -0.0961 6.6303 1.9943 13 6 3.6942 3.5891 1.1508 14 6 4.0739 2.8880 -0.1571 15 6 3.5655 1.4449 -0.1241 16 1 4.0001 0.9262 0.7303 17 7 3.9557 0.7615 -1.3597 18 6 5.1938 0.1856 -1.4620 19 1 5.8829 0.2357 -0.6318 20 6 5.5634 -0.4624 -2.6326 21 7 4.7235 -0.5238 -3.6442 22 14 7.2527 -1.2473 -2.7723 23 1 7.4034 -2.2876 -1.7235 24 1 7.4000 -1.8698 -4.1125 25 1 8.2980 -0.2079 -2.5924 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 0.5512 2.2168 1.3557 32 1 1.9931 1.5388 2.1548 33 1 2.8623 5.9549 2.4032 34 1 2.6068 6.1237 0.6498 35 1 2.3281 8.5324 1.8256 36 1 0.7201 8.9362 2.0977 37 1 4.2189 3.1195 1.9828 38 1 3.9682 4.6425 1.0937 39 1 5.1582 2.8892 -0.2691 40 1 3.6204 3.4143 -0.9970 41 1 3.3369 0.7168 -2.1054 42 1 4.9819 -0.9764 -4.4623 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037816244.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:28:37 Heat of formation + Delta-G solvation = -69.744199 kcal Electronic energy + Delta-G solvation = -23145.167540 eV Core-core repulsion = 19739.050084 eV Total energy + Delta-G solvation = -3406.117456 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.45963 -39.10181 -37.45640 -34.72200 -33.82933 -33.73581 -31.71729 -30.76389 -29.48798 -28.32091 -25.01009 -23.84911 -22.85275 -21.40199 -20.79329 -19.76148 -18.91071 -17.59453 -17.37906 -17.07913 -15.97980 -15.90696 -15.61656 -14.89041 -14.48745 -14.03225 -13.92914 -13.70081 -13.45795 -13.28783 -13.09731 -13.02474 -12.69319 -12.21236 -11.96682 -11.82010 -11.59799 -11.26244 -10.93687 -10.87066 -10.70558 -10.33970 -10.24017 -10.16401 -10.10789 -9.83693 -9.72694 -9.58851 -9.37366 -8.91057 -8.40041 -6.98159 -5.79137 -3.07954 2.50507 2.79105 2.89137 3.40855 3.45784 3.46942 3.51992 4.36839 4.55858 4.72889 4.94303 4.99007 5.12531 5.24530 5.28910 5.35583 5.47100 5.57214 5.60532 5.70879 5.72312 5.93566 6.03377 6.15411 6.17761 6.31833 6.38100 6.42470 6.47466 6.58292 6.60075 6.69906 6.83469 6.97683 7.06037 7.10536 7.55469 7.66078 8.12612 8.37544 8.39051 9.50391 10.08183 10.43035 11.43202 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.022640 B = 0.004078 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.450574 B = 6864.019937 C = 7714.668886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.069 0.931 5 C 0.121 3.879 6 N -0.610 5.610 7 C 0.513 3.487 8 O -0.505 6.505 9 C -0.167 4.167 10 C 0.515 3.485 11 N -0.862 5.862 12 O -0.497 6.497 13 C 0.106 3.894 14 C -0.152 4.152 15 C 0.183 3.817 16 H 0.048 0.952 17 N -0.720 5.720 18 C -0.239 4.239 19 H 0.069 0.931 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.287 1.287 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.399 0.601 36 H 0.401 0.599 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.384 0.616 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.254 13.685 11.360 17.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.088 0.912 5 C -0.001 4.001 6 N -0.344 5.344 7 C 0.298 3.702 8 O -0.379 6.379 9 C -0.210 4.210 10 C 0.298 3.702 11 N -0.428 5.428 12 O -0.369 6.369 13 C -0.017 4.017 14 C -0.194 4.194 15 C 0.073 3.927 16 H 0.066 0.934 17 N -0.361 5.361 18 C -0.371 4.371 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.736 3.264 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.214 1.214 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.227 0.773 36 H 0.232 0.768 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.218 0.782 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.468 13.093 11.515 17.778 hybrid contribution 1.334 0.071 -0.517 1.433 sum -2.133 13.164 10.998 17.286 Atomic orbital electron populations 1.21846 0.96793 1.01009 1.01380 1.21446 0.94399 0.95716 1.03406 1.21784 0.97552 0.96271 0.96843 0.91240 1.21721 0.99493 0.81292 0.97630 1.48164 1.08326 1.06672 1.71275 1.19864 0.87144 0.85297 0.77882 1.90827 1.13994 1.85582 1.47494 1.21638 0.99464 0.93631 1.06262 1.20076 0.89849 0.83365 0.76957 1.43877 1.13376 1.07977 1.77586 1.90906 1.19577 1.80200 1.46171 1.21859 0.79679 1.00891 0.99292 1.22688 1.02142 0.99411 0.95125 1.20181 0.90842 0.90499 0.91177 0.93443 1.42409 1.16439 1.64467 1.12745 1.19167 0.91806 1.27493 0.98597 0.91302 1.24723 0.98100 1.01504 0.96450 1.69649 1.35267 1.48308 1.04766 0.86307 0.84153 0.79184 0.76745 1.21308 1.21772 1.21358 0.92996 0.93161 0.93199 0.92486 0.89838 0.89139 0.91776 0.86187 0.85979 0.77316 0.76805 0.91463 0.90711 0.90592 0.92196 0.78194 0.93462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.67 37.16 0.36 -1.84 16 2 C -0.11 -1.83 5.31 -26.74 -0.14 -1.97 16 3 C -0.10 -1.71 1.92 -90.50 -0.17 -1.89 16 4 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 5 C 0.12 1.79 5.32 -3.71 -0.02 1.77 16 6 N -0.61 -8.33 2.97 -172.76 -0.51 -8.84 16 7 C 0.51 7.46 7.69 -10.98 -0.08 7.38 16 8 O -0.51 -9.73 13.59 -18.95 -0.26 -9.99 16 9 C -0.17 -1.58 4.53 -29.03 -0.13 -1.71 16 10 C 0.52 5.90 8.09 -10.98 -0.09 5.81 16 11 N -0.86 -5.52 8.87 31.22 0.28 -5.25 16 12 O -0.50 -8.66 15.02 -18.95 -0.28 -8.95 16 13 C 0.11 1.24 6.34 -3.71 -0.02 1.21 16 14 C -0.15 -2.37 5.66 -26.62 -0.15 -2.53 16 15 C 0.18 3.35 2.19 -67.89 -0.15 3.20 16 16 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 17 N -0.72 -16.88 4.33 -53.38 -0.23 -17.11 16 18 C -0.24 -6.27 9.93 -15.06 -0.15 -6.42 16 19 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -27.32 13.06 55.49 0.72 -26.60 16 22 Si 0.90 21.68 29.55 -169.99 -5.02 16.66 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.68 6.70 -51.93 -0.35 0.33 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.08 1.62 7.22 -51.93 -0.37 1.25 16 31 H 0.09 1.44 5.72 -51.93 -0.30 1.15 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.12 0.73 7.94 -51.93 -0.41 0.32 16 34 H 0.12 0.87 7.69 -51.93 -0.40 0.47 16 35 H 0.40 1.14 8.83 -40.82 -0.36 0.78 16 36 H 0.40 2.31 8.93 -40.82 -0.36 1.95 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.63 5.94 -51.93 -0.31 0.32 16 39 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.38 9.80 7.51 -40.82 -0.31 9.50 16 42 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 336.73 15.07 5.07 5.07 Total: -1.00 -35.34 336.73 -7.60 -42.95 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -6.52 Total: 9.46 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -0.85 Total: 2.60 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: 0.26 Total: -57.80 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.54 Total: -18.93 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.34 -7.60 -42.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037816244.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.799 kcal (2) G-P(sol) polarization free energy of solvation -35.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds