Wall clock time and date at job start Fri Apr 10 2020 17:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09000 * 109.49911 * 305.00237 * 3 2 1 5 5 C 1.53194 * 109.49798 * 65.06470 * 3 2 1 6 6 N 1.46931 * 108.77440 * 174.55497 * 5 3 2 7 7 C 1.34780 * 120.60344 * 126.42414 * 6 5 3 8 8 O 1.21272 * 120.00211 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.99670 * 180.02562 * 7 6 5 10 10 C 1.50697 * 109.46614 * 179.97438 * 9 7 6 11 11 N 1.34781 * 119.99366 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00365 * 359.97438 * 10 9 7 13 13 C 1.46931 * 118.76555 * 306.44689 * 6 5 3 14 14 C 1.53181 * 108.77555 * 53.58363 * 13 6 5 15 15 C 1.53039 * 109.31629 * 305.36668 * 14 13 6 16 16 H 1.08992 * 109.46104 * 301.34336 * 15 14 13 17 17 N 1.46501 * 109.46153 * 181.38437 * 15 14 13 18 18 C 1.36932 * 120.00046 * 84.93563 * 17 15 14 19 19 H 1.08004 * 120.00081 * 359.97438 * 18 17 15 20 20 C 1.38814 * 120.00297 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99824 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00042 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47102 * 60.00240 * 22 20 18 24 24 H 1.48503 * 109.46876 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47491 * 299.99831 * 22 20 18 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 31 31 H 1.08998 * 109.58469 * 294.37538 * 5 3 2 32 32 H 1.09004 * 109.58890 * 54.79996 * 5 3 2 33 33 H 1.09001 * 109.46601 * 299.99374 * 9 7 6 34 34 H 1.08994 * 109.47651 * 59.99579 * 9 7 6 35 35 H 0.96996 * 120.00439 * 0.02562 * 11 10 9 36 36 H 0.97006 * 119.99652 * 179.97438 * 11 10 9 37 37 H 1.09004 * 109.58081 * 293.79999 * 13 6 5 38 38 H 1.08996 * 109.70188 * 173.44487 * 13 6 5 39 39 H 1.09006 * 109.50065 * 185.41362 * 14 13 6 40 40 H 1.09001 * 109.49768 * 65.32094 * 14 13 6 41 41 H 0.96998 * 119.99848 * 264.93324 * 17 15 14 42 42 H 0.97002 * 120.00180 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6057 1.9819 -0.8416 5 6 1.6365 2.1274 1.3095 6 7 2.2438 3.4648 1.3502 7 6 1.4841 4.5570 1.5660 8 8 0.2880 4.4412 1.7292 9 6 2.1212 5.9222 1.6045 10 6 1.0620 6.9637 1.8585 11 7 1.4019 8.2657 1.9346 12 8 -0.0961 6.6303 1.9943 13 6 3.6942 3.5891 1.1508 14 6 4.0739 2.8880 -0.1571 15 6 3.5655 1.4449 -0.1241 16 1 4.0001 0.9262 0.7303 17 7 3.9557 0.7615 -1.3597 18 6 5.1938 0.1856 -1.4620 19 1 5.8829 0.2357 -0.6318 20 6 5.5634 -0.4624 -2.6326 21 7 4.7235 -0.5238 -3.6442 22 14 7.2527 -1.2473 -2.7723 23 1 7.4034 -2.2876 -1.7235 24 1 7.4000 -1.8698 -4.1125 25 1 8.2980 -0.2079 -2.5924 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 0.5512 2.2168 1.3557 32 1 1.9931 1.5388 2.1548 33 1 2.8623 5.9549 2.4032 34 1 2.6068 6.1237 0.6498 35 1 2.3281 8.5324 1.8256 36 1 0.7201 8.9362 2.0977 37 1 4.2189 3.1195 1.9828 38 1 3.9682 4.6425 1.0937 39 1 5.1582 2.8892 -0.2691 40 1 3.6204 3.4143 -0.9970 41 1 3.3369 0.7168 -2.1054 42 1 4.9819 -0.9764 -4.4623 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037816244.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:28:37 Heat of formation + Delta-G solvation = -96.489870 kcal Electronic energy + Delta-G solvation = -23146.327319 eV Core-core repulsion = 19739.050084 eV Total energy + Delta-G solvation = -3407.277235 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.52053 -40.15387 -38.72096 -36.12496 -35.33695 -34.56608 -33.39862 -31.69513 -30.99354 -29.60430 -26.56959 -25.15602 -24.38025 -22.38369 -22.10170 -21.06257 -20.00352 -19.01141 -18.52431 -18.11010 -17.01326 -16.87872 -16.71903 -16.54597 -15.65345 -15.54128 -15.37977 -14.96295 -14.70151 -14.61358 -14.30789 -14.24657 -13.90504 -13.55721 -13.09403 -13.00120 -12.91399 -12.77627 -12.62615 -12.50628 -12.18668 -12.01986 -11.81579 -11.56190 -11.50296 -11.13000 -11.05569 -10.77584 -10.55106 -10.47740 -9.56755 -8.92334 -7.87741 -5.15150 1.50865 1.52951 1.58757 1.65725 1.78060 1.94065 2.60881 2.75726 3.43695 3.47386 3.80018 3.83829 4.03688 4.12010 4.15391 4.28295 4.38427 4.39862 4.41845 4.50126 4.51759 4.66638 4.80344 4.84707 4.90114 4.94178 5.04229 5.10243 5.18218 5.30981 5.41705 5.49580 5.55890 5.62865 5.71982 5.98989 6.33270 6.47069 6.58768 7.26581 7.39891 7.50657 8.16842 8.39813 9.35755 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.022640 B = 0.004078 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.450574 B = 6864.019937 C = 7714.668886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C -0.092 4.092 4 H 0.048 0.952 5 C 0.127 3.873 6 N -0.609 5.609 7 C 0.504 3.496 8 O -0.560 6.560 9 C -0.158 4.158 10 C 0.509 3.491 11 N -0.836 5.836 12 O -0.569 6.569 13 C 0.112 3.888 14 C -0.144 4.144 15 C 0.177 3.823 16 H 0.048 0.952 17 N -0.732 5.732 18 C -0.229 4.229 19 H 0.079 0.921 20 C -0.077 4.077 21 N -0.972 5.972 22 Si 0.967 3.033 23 H -0.280 1.280 24 H -0.303 1.303 25 H -0.276 1.276 26 H 0.043 0.957 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.166 0.834 34 H 0.155 0.845 35 H 0.420 0.580 36 H 0.406 0.594 37 H 0.087 0.913 38 H 0.121 0.879 39 H 0.071 0.929 40 H 0.046 0.954 41 H 0.369 0.631 42 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.206 15.549 13.333 20.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.112 4.112 4 H 0.066 0.934 5 C 0.003 3.997 6 N -0.343 5.343 7 C 0.292 3.708 8 O -0.437 6.437 9 C -0.200 4.200 10 C 0.293 3.707 11 N -0.402 5.402 12 O -0.446 6.446 13 C -0.010 4.010 14 C -0.185 4.185 15 C 0.069 3.931 16 H 0.066 0.934 17 N -0.371 5.371 18 C -0.361 4.361 19 H 0.097 0.903 20 C -0.269 4.269 21 N -0.624 5.624 22 Si 0.797 3.203 23 H -0.207 1.207 24 H -0.230 1.230 25 H -0.202 1.202 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.184 0.816 34 H 0.173 0.827 35 H 0.252 0.748 36 H 0.238 0.762 37 H 0.105 0.895 38 H 0.139 0.861 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.201 0.799 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.335 15.036 13.543 20.280 hybrid contribution 0.683 -0.455 -1.077 1.354 sum -0.652 14.581 12.466 19.194 Atomic orbital electron populations 1.21778 0.95228 1.01809 1.01517 1.21356 0.95785 0.95514 1.01901 1.21624 0.96182 0.96180 0.97250 0.93351 1.21540 0.98966 0.82420 0.96726 1.48259 1.09209 1.06045 1.70774 1.20767 0.86628 0.86987 0.76449 1.90818 1.16573 1.86485 1.49823 1.21725 0.99225 0.89467 1.09615 1.20496 0.89257 0.84908 0.76019 1.43655 1.14843 1.06467 1.75213 1.90894 1.22402 1.81494 1.49810 1.21998 0.78249 1.03468 0.97285 1.22482 1.01459 0.97306 0.97264 1.20443 0.91972 0.91853 0.88845 0.93431 1.42603 1.15448 1.65126 1.13937 1.19577 0.92549 1.25676 0.98319 0.90273 1.25477 1.01527 1.03266 0.96605 1.69822 1.37148 1.50192 1.05199 0.85295 0.80496 0.78464 0.76012 1.20655 1.22965 1.20203 0.93811 0.92026 0.92083 0.91675 0.93465 0.90496 0.90245 0.81632 0.82710 0.74787 0.76247 0.89468 0.86077 0.91083 0.93556 0.79942 0.94379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.24 9.67 71.98 0.70 -3.54 16 2 C -0.11 -3.58 5.31 30.59 0.16 -3.42 16 3 C -0.09 -3.03 1.92 -10.72 -0.02 -3.05 16 4 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 5 C 0.13 3.61 5.32 86.36 0.46 4.07 16 6 N -0.61 -15.08 2.97 -818.89 -2.43 -17.51 16 7 C 0.50 13.59 7.69 87.66 0.67 14.26 16 8 O -0.56 -21.60 13.59 20.44 0.28 -21.32 16 9 C -0.16 -2.32 4.53 29.10 0.13 -2.19 16 10 C 0.51 10.48 8.09 87.66 0.71 11.19 16 11 N -0.84 -7.97 8.87 -173.53 -1.54 -9.51 16 12 O -0.57 -19.83 15.02 20.43 0.31 -19.52 16 13 C 0.11 2.12 6.34 86.36 0.55 2.67 16 14 C -0.14 -4.18 5.66 30.67 0.17 -4.00 16 15 C 0.18 6.35 2.19 45.02 0.10 6.45 16 16 H 0.05 1.72 8.08 -2.39 -0.02 1.70 16 17 N -0.73 -34.78 4.33 -322.81 -1.40 -36.18 16 18 C -0.23 -11.99 9.93 84.03 0.83 -11.15 16 19 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 20 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 21 N -0.97 -58.64 13.06 21.65 0.28 -58.35 16 22 Si 0.97 44.76 29.55 68.60 2.03 46.79 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 24 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 25 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 26 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.06 1.65 6.70 -2.39 -0.02 1.64 16 28 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.06 2.03 8.14 -2.39 -0.02 2.02 16 30 H 0.05 1.92 7.22 -2.39 -0.02 1.90 16 31 H 0.08 2.45 5.72 -2.39 -0.01 2.44 16 32 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.17 0.94 7.94 -2.39 -0.02 0.92 16 34 H 0.16 1.31 7.69 -2.39 -0.02 1.29 16 35 H 0.42 0.47 8.83 -92.71 -0.82 -0.35 16 36 H 0.41 3.67 8.93 -92.70 -0.83 2.84 16 37 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.12 1.24 5.94 -2.39 -0.01 1.23 16 39 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 40 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.37 19.58 7.51 -92.71 -0.70 18.88 16 42 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -82.36 336.73 1.17 -81.19 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: -1.29 Total: 26.94 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 4.93 Total: 7.48 kcal Atomic # 7 Polarization: -116.47 SS G_CDS: -5.09 Total: -121.56 kcal Atomic # 8 Polarization: -41.43 SS G_CDS: 0.58 Total: -40.84 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -82.36 1.17 -81.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037816244.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.299 kcal (2) G-P(sol) polarization free energy of solvation -82.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds