Wall clock time and date at job start Fri Apr 10 2020 17:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09009 * 115.55561 * 2 1 4 4 C 1.53077 * 117.49476 * 214.27098 * 2 1 3 5 5 C 1.53002 * 59.98498 * 252.51234 * 4 2 1 6 6 H 1.09001 * 117.49461 * 107.50104 * 5 4 2 7 7 C 1.50700 * 117.49942 * 252.49668 * 5 4 2 8 8 O 1.21283 * 119.99803 * 68.74644 * 7 5 4 9 9 N 1.34777 * 119.99675 * 249.02519 * 7 5 4 10 10 C 1.46496 * 120.00345 * 359.72090 * 9 7 5 11 11 C 1.46497 * 119.99525 * 179.72583 * 9 7 5 12 12 C 1.53009 * 109.47238 * 90.00006 * 11 9 7 13 13 N 1.46900 * 109.47216 * 179.97438 * 12 11 9 14 14 C 1.46894 * 111.00238 * 179.97438 * 13 12 11 15 15 C 1.50690 * 109.47563 * 179.97438 * 14 13 12 16 16 O 1.21299 * 119.99933 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00286 * 180.02562 * 15 14 13 18 18 C 1.37095 * 120.00093 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00201 * 359.97438 * 18 17 15 20 20 C 1.38946 * 120.00433 * 179.97438 * 18 17 15 21 21 N 1.31417 * 119.99699 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00483 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47365 * 89.99960 * 22 20 18 24 24 H 1.48506 * 109.47103 * 210.00254 * 22 20 18 25 25 H 1.48506 * 109.46921 * 329.99691 * 22 20 18 26 26 H 1.08996 * 109.47264 * 274.32998 * 1 2 3 27 27 H 1.09007 * 109.47424 * 34.32740 * 1 2 3 28 28 H 1.08999 * 109.47440 * 154.32848 * 1 2 3 29 29 H 1.09008 * 117.51268 * 145.03501 * 4 2 1 30 30 H 1.08992 * 117.49669 * 0.02562 * 4 2 1 31 31 H 1.08997 * 109.47115 * 90.00316 * 10 9 7 32 32 H 1.08995 * 109.47364 * 210.00706 * 10 9 7 33 33 H 1.09002 * 109.47090 * 330.00257 * 10 9 7 34 34 H 1.09000 * 109.46889 * 209.99487 * 11 9 7 35 35 H 1.09001 * 109.47460 * 330.00097 * 11 9 7 36 36 H 1.09000 * 109.46757 * 299.99562 * 12 11 9 37 37 H 1.08993 * 109.47081 * 59.99692 * 12 11 9 38 38 H 1.00903 * 110.99770 * 56.04511 * 13 12 11 39 39 H 1.09004 * 109.47183 * 300.00490 * 14 13 12 40 40 H 1.08998 * 109.46858 * 59.99804 * 14 13 12 41 41 H 0.96993 * 119.99844 * 0.02562 * 17 15 14 42 42 H 0.96994 * 120.00210 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2366 -1.1221 -0.7646 5 6 2.2364 -1.1207 0.7654 6 1 1.6112 -1.8579 1.2692 7 6 3.5292 -0.7806 1.4611 8 8 3.9709 0.3474 1.4024 9 7 4.1974 -1.7314 2.1438 10 6 3.6639 -3.0939 2.2147 11 6 5.4573 -1.4022 2.8150 12 6 5.1679 -0.9404 4.2448 13 7 6.4313 -0.6109 4.9181 14 6 6.1919 -0.1620 6.2961 15 6 7.5077 0.1656 6.9535 16 8 8.5432 0.0382 6.3346 17 7 7.5341 0.6003 8.2290 18 6 8.7312 0.8988 8.8268 19 1 9.6532 0.7853 8.2758 20 6 8.7585 1.3474 10.1416 21 7 7.6367 1.4850 10.8122 22 14 10.3894 1.7549 10.9559 23 1 10.7156 3.1848 10.7229 24 1 10.2909 1.5011 12.4158 25 1 11.4586 0.9025 10.3765 26 1 -0.3633 0.0776 1.0247 27 1 -0.3634 0.8487 -0.5795 28 1 -0.3634 -0.9262 -0.4452 29 1 3.1719 -0.8770 -1.2680 30 1 1.6113 -1.8596 -1.2677 31 1 4.0501 -3.6792 1.3803 32 1 3.9688 -3.5551 3.1540 33 1 2.5756 -3.0611 2.1626 34 1 6.0966 -2.2846 2.8407 35 1 5.9614 -0.6039 2.2704 36 1 4.5286 -0.0580 4.2191 37 1 4.6638 -1.7387 4.7894 38 1 6.9487 0.0814 4.3973 39 1 5.5601 0.7262 6.2844 40 1 5.6943 -0.9544 6.8551 41 1 6.7062 0.7018 8.7239 42 1 7.6556 1.7985 11.7299 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493658357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:17 Heat of formation + Delta-G solvation = -46.040802 kcal Electronic energy + Delta-G solvation = -21506.730271 eV Core-core repulsion = 18101.640671 eV Total energy + Delta-G solvation = -3405.089600 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.41767 -38.29094 -37.44513 -36.13622 -34.94366 -33.78966 -31.22267 -30.18028 -28.94102 -27.05176 -26.20942 -24.54362 -23.35452 -21.94041 -21.01977 -19.37509 -19.05694 -17.87730 -17.61674 -16.47185 -16.27473 -15.54003 -15.49971 -14.93844 -14.52956 -14.34821 -14.02845 -13.72270 -13.62980 -13.39696 -13.24919 -13.15098 -12.98838 -12.69288 -12.37561 -12.15707 -11.99610 -11.74600 -11.49493 -11.47770 -11.11406 -10.96424 -10.71880 -10.39882 -10.37397 -10.19703 -9.96393 -9.48682 -8.93197 -8.43100 -8.05626 -7.93630 -6.39370 -3.80133 2.26081 2.68704 3.19832 3.28142 3.34418 3.45723 3.93513 4.09846 4.18047 4.38256 4.40441 4.46920 4.64348 4.89219 4.94596 4.98206 5.04518 5.19316 5.24289 5.27747 5.30529 5.32596 5.37333 5.41007 5.52744 5.56951 5.68820 5.78156 5.88224 5.91975 5.95594 6.01506 6.24300 6.33143 7.13956 7.20382 7.57572 7.66193 7.98037 8.08735 8.63797 9.20183 9.56756 10.08306 10.78484 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.038593 B = 0.002370 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.352755 B =11813.209016 C =12057.751881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.124 4.124 3 H 0.117 0.883 4 C -0.148 4.148 5 C -0.192 4.192 6 H 0.125 0.875 7 C 0.541 3.459 8 O -0.537 6.537 9 N -0.612 5.612 10 C 0.078 3.922 11 C 0.117 3.883 12 C 0.046 3.954 13 N -0.667 5.667 14 C 0.052 3.948 15 C 0.442 3.558 16 O -0.583 6.583 17 N -0.564 5.564 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.030 0.970 37 H 0.070 0.930 38 H 0.351 0.649 39 H 0.044 0.956 40 H 0.086 0.914 41 H 0.392 0.608 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.298 -8.487 -19.102 26.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.142 4.142 3 H 0.135 0.865 4 C -0.185 4.185 5 C -0.213 4.213 6 H 0.142 0.858 7 C 0.329 3.671 8 O -0.413 6.413 9 N -0.345 5.345 10 C -0.065 4.065 11 C -0.006 4.006 12 C -0.085 4.085 13 N -0.300 5.300 14 C -0.081 4.081 15 C 0.227 3.773 16 O -0.467 6.467 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.758 3.242 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.117 0.883 30 H 0.122 0.878 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.049 0.951 37 H 0.088 0.912 38 H 0.170 0.830 39 H 0.062 0.938 40 H 0.104 0.896 41 H 0.225 0.775 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.244 -8.573 -19.152 25.936 hybrid contribution -0.177 0.962 0.882 1.317 sum -15.420 -7.611 -18.270 25.090 Atomic orbital electron populations 1.21399 0.92165 1.02214 1.02283 1.22411 0.95264 0.95166 1.01374 0.86474 1.23100 1.03145 1.01580 0.90679 1.22360 0.97830 1.05345 0.95787 0.85772 1.19721 0.84724 0.84449 0.78220 1.90714 1.68349 1.20814 1.61446 1.47746 1.24137 1.10488 1.52126 1.21850 0.99511 0.82431 1.02698 1.21433 0.84451 1.02529 0.92191 1.22255 0.92003 0.99949 0.94250 1.60034 1.18085 1.49594 1.02241 1.21654 0.96862 0.99338 0.90204 1.19794 0.90020 0.84149 0.83338 1.90522 1.34249 1.57828 1.64097 1.41859 1.09762 1.57851 1.10608 1.19709 0.86850 1.40810 0.95441 0.87901 1.25272 0.98784 0.97441 0.96544 1.69616 1.26280 1.46916 1.11581 0.85845 0.81524 0.78852 0.77988 1.20423 1.20938 1.19395 0.91892 0.91612 0.92369 0.88304 0.87782 0.92338 0.90597 0.90989 0.89257 0.89760 0.95149 0.91152 0.82979 0.93812 0.89628 0.77453 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 10.19 37.15 0.38 -0.34 16 2 C -0.12 -1.00 5.92 -90.58 -0.54 -1.54 16 3 H 0.12 1.18 7.67 -51.92 -0.40 0.79 16 4 C -0.15 -1.02 9.88 -26.69 -0.26 -1.29 16 5 C -0.19 -1.60 5.00 -91.77 -0.46 -2.06 16 6 H 0.12 0.76 6.45 -51.93 -0.33 0.43 16 7 C 0.54 6.46 7.46 -10.98 -0.08 6.38 16 8 O -0.54 -8.63 15.84 5.55 0.09 -8.54 16 9 N -0.61 -6.35 2.87 -181.57 -0.52 -6.87 16 10 C 0.08 0.51 10.26 59.84 0.61 1.12 16 11 C 0.12 1.41 5.67 -4.04 -0.02 1.39 16 12 C 0.05 0.63 6.01 -3.82 -0.02 0.61 16 13 N -0.67 -11.46 6.13 -115.06 -0.70 -12.16 16 14 C 0.05 0.97 6.17 -4.98 -0.03 0.94 16 15 C 0.44 10.80 7.82 -10.99 -0.09 10.71 16 16 O -0.58 -16.29 15.78 5.54 0.09 -16.20 16 17 N -0.56 -14.71 5.29 -10.97 -0.06 -14.76 16 18 C -0.30 -8.51 9.68 -14.94 -0.14 -8.65 16 19 H 0.10 3.07 7.16 -52.48 -0.38 2.69 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.97 13.05 55.50 0.72 -24.25 16 22 Si 0.93 21.39 29.55 -169.99 -5.02 16.37 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.27 7.90 -51.93 -0.41 -0.14 16 29 H 0.10 0.77 8.14 -51.92 -0.42 0.34 16 30 H 0.10 0.50 8.05 -51.93 -0.42 0.08 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.46 8.07 -51.93 -0.42 0.04 16 33 H 0.07 0.35 6.00 -51.93 -0.31 0.03 16 34 H 0.09 0.99 8.07 -51.93 -0.42 0.57 16 35 H 0.08 1.16 7.42 -51.93 -0.39 0.78 16 36 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.35 6.33 8.43 -39.29 -0.33 6.00 16 39 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.39 9.76 7.90 -40.82 -0.32 9.44 16 42 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 355.95 15.07 5.36 5.36 Total: -1.00 -34.07 355.95 -7.44 -41.51 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -6.64 Total: 11.77 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -0.75 Total: 7.76 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: -0.56 Total: -58.05 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: 0.18 Total: -24.74 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.07 -7.44 -41.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493658357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.527 kcal (2) G-P(sol) polarization free energy of solvation -34.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds