Wall clock time and date at job start Fri Apr 10 2020 17:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09009 * 115.55561 * 2 1 4 4 C 1.53077 * 117.49476 * 214.27098 * 2 1 3 5 5 C 1.53002 * 59.98498 * 252.51234 * 4 2 1 6 6 H 1.09001 * 117.49461 * 107.50104 * 5 4 2 7 7 C 1.50700 * 117.49942 * 252.49668 * 5 4 2 8 8 O 1.21283 * 119.99803 * 68.74644 * 7 5 4 9 9 N 1.34777 * 119.99675 * 249.02519 * 7 5 4 10 10 C 1.46496 * 120.00345 * 359.72090 * 9 7 5 11 11 C 1.46497 * 119.99525 * 179.72583 * 9 7 5 12 12 C 1.53009 * 109.47238 * 90.00006 * 11 9 7 13 13 N 1.46900 * 109.47216 * 179.97438 * 12 11 9 14 14 C 1.46894 * 111.00238 * 179.97438 * 13 12 11 15 15 C 1.50690 * 109.47563 * 179.97438 * 14 13 12 16 16 O 1.21299 * 119.99933 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00286 * 180.02562 * 15 14 13 18 18 C 1.37095 * 120.00093 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00201 * 359.97438 * 18 17 15 20 20 C 1.38946 * 120.00433 * 179.97438 * 18 17 15 21 21 N 1.31417 * 119.99699 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00483 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47365 * 89.99960 * 22 20 18 24 24 H 1.48506 * 109.47103 * 210.00254 * 22 20 18 25 25 H 1.48506 * 109.46921 * 329.99691 * 22 20 18 26 26 H 1.08996 * 109.47264 * 274.32998 * 1 2 3 27 27 H 1.09007 * 109.47424 * 34.32740 * 1 2 3 28 28 H 1.08999 * 109.47440 * 154.32848 * 1 2 3 29 29 H 1.09008 * 117.51268 * 145.03501 * 4 2 1 30 30 H 1.08992 * 117.49669 * 0.02562 * 4 2 1 31 31 H 1.08997 * 109.47115 * 90.00316 * 10 9 7 32 32 H 1.08995 * 109.47364 * 210.00706 * 10 9 7 33 33 H 1.09002 * 109.47090 * 330.00257 * 10 9 7 34 34 H 1.09000 * 109.46889 * 209.99487 * 11 9 7 35 35 H 1.09001 * 109.47460 * 330.00097 * 11 9 7 36 36 H 1.09000 * 109.46757 * 299.99562 * 12 11 9 37 37 H 1.08993 * 109.47081 * 59.99692 * 12 11 9 38 38 H 1.00903 * 110.99770 * 56.04511 * 13 12 11 39 39 H 1.09004 * 109.47183 * 300.00490 * 14 13 12 40 40 H 1.08998 * 109.46858 * 59.99804 * 14 13 12 41 41 H 0.96993 * 119.99844 * 0.02562 * 17 15 14 42 42 H 0.96994 * 120.00210 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2366 -1.1221 -0.7646 5 6 2.2364 -1.1207 0.7654 6 1 1.6112 -1.8579 1.2692 7 6 3.5292 -0.7806 1.4611 8 8 3.9709 0.3474 1.4024 9 7 4.1974 -1.7314 2.1438 10 6 3.6639 -3.0939 2.2147 11 6 5.4573 -1.4022 2.8150 12 6 5.1679 -0.9404 4.2448 13 7 6.4313 -0.6109 4.9181 14 6 6.1919 -0.1620 6.2961 15 6 7.5077 0.1656 6.9535 16 8 8.5432 0.0382 6.3346 17 7 7.5341 0.6003 8.2290 18 6 8.7312 0.8988 8.8268 19 1 9.6532 0.7853 8.2758 20 6 8.7585 1.3474 10.1416 21 7 7.6367 1.4850 10.8122 22 14 10.3894 1.7549 10.9559 23 1 10.7156 3.1848 10.7229 24 1 10.2909 1.5011 12.4158 25 1 11.4586 0.9025 10.3765 26 1 -0.3633 0.0776 1.0247 27 1 -0.3634 0.8487 -0.5795 28 1 -0.3634 -0.9262 -0.4452 29 1 3.1719 -0.8770 -1.2680 30 1 1.6113 -1.8596 -1.2677 31 1 4.0501 -3.6792 1.3803 32 1 3.9688 -3.5551 3.1540 33 1 2.5756 -3.0611 2.1626 34 1 6.0966 -2.2846 2.8407 35 1 5.9614 -0.6039 2.2704 36 1 4.5286 -0.0580 4.2191 37 1 4.6638 -1.7387 4.7894 38 1 6.9487 0.0814 4.3973 39 1 5.5601 0.7262 6.2844 40 1 5.6943 -0.9544 6.8551 41 1 6.7062 0.7018 8.7239 42 1 7.6556 1.7985 11.7299 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493658357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:16 Heat of formation + Delta-G solvation = -71.244552 kcal Electronic energy + Delta-G solvation = -21507.823187 eV Core-core repulsion = 18101.640671 eV Total energy + Delta-G solvation = -3406.182516 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.27103 -40.19358 -38.23739 -37.21593 -36.26341 -35.72164 -33.30571 -31.30096 -29.55330 -28.14349 -27.37008 -26.06570 -24.53107 -22.92889 -21.66532 -21.13782 -20.04581 -19.86960 -18.43630 -17.91675 -17.38122 -17.08962 -16.57429 -16.35966 -16.03307 -15.65395 -15.33771 -14.95925 -14.81807 -14.55059 -14.08093 -14.00162 -13.84726 -13.65759 -13.55089 -13.39295 -13.18113 -12.98800 -12.83910 -12.71337 -12.43886 -12.30468 -12.14962 -12.12536 -11.53248 -11.33459 -11.00555 -10.83260 -10.42540 -10.04691 -9.75840 -9.48251 -8.48730 -5.97970 1.37024 1.40522 1.41257 1.54100 1.86372 2.00866 2.28398 2.81336 2.94975 3.17883 3.42645 3.57062 3.76947 3.84048 3.95856 4.03798 4.12563 4.26124 4.36870 4.41605 4.43676 4.44753 4.53074 4.65711 4.72439 4.79369 4.85974 4.91159 4.92950 4.98794 5.07226 5.22033 5.38617 5.40098 5.44296 5.79682 6.02700 6.22794 6.33837 6.56812 7.09548 7.10607 7.52160 8.07233 8.68761 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.038593 B = 0.002370 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.352755 B =11813.209016 C =12057.751881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.137 4.137 3 H 0.085 0.915 4 C -0.131 4.131 5 C -0.193 4.193 6 H 0.155 0.845 7 C 0.529 3.471 8 O -0.591 6.591 9 N -0.609 5.609 10 C 0.071 3.929 11 C 0.121 3.879 12 C 0.056 3.944 13 N -0.675 5.675 14 C 0.066 3.934 15 C 0.437 3.563 16 O -0.622 6.622 17 N -0.572 5.572 18 C -0.335 4.335 19 H 0.079 0.921 20 C -0.014 4.014 21 N -0.920 5.920 22 Si 0.995 3.005 23 H -0.271 1.271 24 H -0.269 1.269 25 H -0.272 1.272 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.136 0.864 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.059 0.941 36 H 0.017 0.983 37 H 0.090 0.910 38 H 0.343 0.657 39 H 0.060 0.940 40 H 0.110 0.890 41 H 0.397 0.603 42 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.953 -10.186 -19.189 28.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.155 4.155 3 H 0.104 0.896 4 C -0.169 4.169 5 C -0.213 4.213 6 H 0.172 0.828 7 C 0.320 3.680 8 O -0.472 6.472 9 N -0.340 5.340 10 C -0.070 4.070 11 C -0.002 4.002 12 C -0.074 4.074 13 N -0.307 5.307 14 C -0.067 4.067 15 C 0.225 3.775 16 O -0.509 6.509 17 N -0.209 5.209 18 C -0.465 4.465 19 H 0.097 0.903 20 C -0.214 4.214 21 N -0.561 5.561 22 Si 0.819 3.181 23 H -0.196 1.196 24 H -0.194 1.194 25 H -0.197 1.197 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.154 0.846 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.078 0.922 36 H 0.035 0.965 37 H 0.108 0.892 38 H 0.161 0.839 39 H 0.078 0.922 40 H 0.128 0.872 41 H 0.231 0.769 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.947 -10.316 -19.233 27.633 hybrid contribution 0.327 1.472 0.871 1.742 sum -16.620 -8.845 -18.362 26.299 Atomic orbital electron populations 1.21383 0.90144 1.03436 1.02489 1.22428 0.96735 0.94051 1.02336 0.89622 1.23193 1.02721 1.01293 0.89647 1.22419 0.96226 1.06128 0.96564 0.82803 1.20461 0.85713 0.83865 0.78001 1.90687 1.69920 1.23147 1.63478 1.47865 1.23240 1.11904 1.51012 1.22152 1.00921 0.80132 1.03836 1.21263 0.85616 1.02273 0.91064 1.22252 0.90198 0.99870 0.95072 1.60066 1.19845 1.49112 1.01707 1.21531 0.93458 1.00874 0.90805 1.20786 0.91690 0.82381 0.82664 1.90490 1.36455 1.59099 1.64855 1.41923 1.09298 1.58330 1.11337 1.19685 0.87086 1.43254 0.96441 0.90257 1.26088 1.02385 0.96479 0.96425 1.69675 1.27844 1.46530 1.12056 0.84894 0.77145 0.78667 0.77415 1.19650 1.19366 1.19701 0.92024 0.91405 0.90296 0.89734 0.84558 0.90804 0.89787 0.88747 0.87882 0.92203 0.96495 0.89218 0.83935 0.92231 0.87221 0.76937 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 10.19 71.98 0.73 -0.41 16 2 C -0.14 -2.11 5.92 -10.77 -0.06 -2.17 16 3 H 0.09 1.86 7.67 -2.38 -0.02 1.85 16 4 C -0.13 -1.56 9.88 30.62 0.30 -1.26 16 5 C -0.19 -2.86 5.00 -11.54 -0.06 -2.91 16 6 H 0.15 1.31 6.45 -2.39 -0.02 1.30 16 7 C 0.53 12.51 7.46 87.66 0.65 13.16 16 8 O -0.59 -19.99 15.84 -3.04 -0.05 -20.03 16 9 N -0.61 -11.86 2.87 -846.76 -2.43 -14.30 16 10 C 0.07 0.70 10.26 127.77 1.31 2.01 16 11 C 0.12 2.89 5.67 86.38 0.49 3.38 16 12 C 0.06 1.49 6.01 86.31 0.52 2.01 16 13 N -0.68 -23.01 6.13 -517.95 -3.17 -26.18 16 14 C 0.07 2.41 6.17 85.55 0.53 2.94 16 15 C 0.44 21.68 7.82 87.65 0.69 22.37 16 16 O -0.62 -35.71 15.78 -3.09 -0.05 -35.76 16 17 N -0.57 -30.26 5.29 -306.99 -1.62 -31.88 16 18 C -0.34 -19.48 9.68 84.04 0.81 -18.67 16 19 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 20 C -0.01 -0.76 5.50 84.92 0.47 -0.30 16 21 N -0.92 -50.43 13.05 21.66 0.28 -50.15 16 22 Si 1.00 43.60 29.55 68.60 2.03 45.62 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 24 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.08 0.45 7.90 -2.39 -0.02 0.43 16 29 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.14 0.76 8.05 -2.39 -0.02 0.74 16 31 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.08 0.73 8.07 -2.39 -0.02 0.71 16 33 H 0.09 0.52 6.00 -2.39 -0.01 0.51 16 34 H 0.10 2.16 8.07 -2.39 -0.02 2.14 16 35 H 0.06 1.73 7.42 -2.39 -0.02 1.71 16 36 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.34 12.67 8.43 -89.69 -0.76 11.91 16 39 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 40 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 41 H 0.40 19.89 7.90 -92.71 -0.73 19.15 16 42 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -76.13 355.95 0.91 -75.22 By element: Atomic # 1 Polarization: 37.77 SS G_CDS: -0.46 Total: 37.31 kcal Atomic # 6 Polarization: 13.77 SS G_CDS: 6.38 Total: 20.15 kcal Atomic # 7 Polarization: -115.56 SS G_CDS: -6.95 Total: -122.50 kcal Atomic # 8 Polarization: -55.70 SS G_CDS: -0.10 Total: -55.80 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -76.13 0.91 -75.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493658357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.975 kcal (2) G-P(sol) polarization free energy of solvation -76.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds