Wall clock time and date at job start Fri Apr 10 2020 17:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.46983 * 2 1 4 4 H 1.09003 * 109.47156 * 55.00267 * 3 2 1 5 5 C 1.52999 * 109.46944 * 174.99952 * 3 2 1 6 6 N 1.46501 * 109.47141 * 175.00363 * 5 3 2 7 7 C 1.34779 * 120.00382 * 180.02562 * 6 5 3 8 8 O 1.21284 * 119.99849 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.00170 * 179.97438 * 7 6 5 10 10 C 1.53001 * 110.43569 * 59.30205 * 9 7 6 11 11 C 1.54631 * 110.48622 * 181.83830 * 9 7 6 12 12 C 1.54838 * 101.60189 * 93.92033 * 11 9 7 13 13 N 1.46761 * 105.49319 * 25.43428 * 12 11 9 14 14 C 1.34413 * 111.30168 * 342.96146 * 13 12 11 15 15 O 1.21285 * 124.94484 * 180.37317 * 14 13 12 16 16 N 1.46492 * 109.47517 * 295.00378 * 3 2 1 17 17 C 1.36935 * 120.00376 * 84.99783 * 16 3 2 18 18 H 1.08003 * 119.99724 * 0.02562 * 17 16 3 19 19 C 1.38810 * 120.00063 * 180.02562 * 17 16 3 20 20 N 1.31622 * 119.99887 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00212 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47297 * 89.99941 * 21 19 17 23 23 H 1.48503 * 109.47261 * 330.00122 * 21 19 17 24 24 H 1.48500 * 109.47454 * 210.00115 * 21 19 17 25 25 H 1.09009 * 109.47294 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47269 * 299.99304 * 1 2 3 27 27 H 1.09003 * 109.47654 * 60.00106 * 1 2 3 28 28 H 1.08999 * 109.47197 * 240.00223 * 2 1 3 29 29 H 1.09004 * 109.46863 * 120.00371 * 2 1 3 30 30 H 1.08998 * 109.47356 * 294.99979 * 5 3 2 31 31 H 1.08995 * 109.47607 * 55.00382 * 5 3 2 32 32 H 0.97000 * 119.99881 * 0.02562 * 6 5 3 33 33 H 1.09004 * 109.46944 * 60.69520 * 10 9 7 34 34 H 1.08996 * 109.47279 * 180.70053 * 10 9 7 35 35 H 1.08997 * 109.46789 * 300.70047 * 10 9 7 36 36 H 1.09002 * 110.97223 * 211.99648 * 11 9 7 37 37 H 1.09001 * 110.97039 * 335.76737 * 11 9 7 38 38 H 1.09001 * 110.25339 * 266.41762 * 12 11 9 39 39 H 1.08999 * 110.21639 * 144.43081 * 12 11 9 40 40 H 0.96998 * 124.35148 * 162.93943 * 13 12 11 41 41 H 0.97009 * 119.99477 * 265.00368 * 16 3 2 42 42 H 0.97006 * 119.99732 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5647 1.4443 0.1257 6 7 4.0629 2.8168 0.0061 7 6 5.3856 3.0630 0.0859 8 8 6.1634 2.1483 0.2574 9 6 5.8981 4.4747 -0.0378 10 6 5.2937 5.3600 1.0539 11 6 7.4423 4.4986 0.0395 12 6 7.8299 4.4466 -1.4587 13 7 6.6834 5.0114 -2.1800 14 6 5.5836 5.0341 -1.4077 15 8 4.4971 5.4440 -1.7578 16 7 1.6523 2.0975 -1.2517 17 6 0.4155 2.6735 -1.3687 18 1 -0.2741 2.6452 -0.5379 19 6 0.0481 3.2937 -2.5549 20 7 -1.1405 3.8478 -2.6672 21 14 1.2411 3.3433 -3.9915 22 1 1.0384 2.1450 -4.8449 23 1 2.6344 3.3551 -3.4777 24 1 0.9990 4.5691 -4.7939 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 3.8498 1.0377 1.0960 31 1 3.9954 0.8312 -0.6659 32 1 3.4409 3.5483 -0.1307 33 1 5.5783 4.9747 2.0331 34 1 5.6647 6.3788 0.9424 35 1 4.2074 5.3570 0.9640 36 1 7.7956 5.4198 0.5028 37 1 7.8198 3.6259 0.5725 38 1 8.0000 3.4156 -1.7689 39 1 8.7216 5.0473 -1.6381 40 1 6.7153 5.3280 -3.0963 41 1 2.2719 2.1231 -1.9977 42 1 -1.3974 4.2809 -3.4963 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495057997.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:29 Heat of formation + Delta-G solvation = -66.107744 kcal Electronic energy + Delta-G solvation = -23746.144400 eV Core-core repulsion = 20340.184633 eV Total energy + Delta-G solvation = -3405.959767 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.19364 -38.82894 -36.97049 -36.23379 -33.93970 -33.15349 -32.24703 -30.21813 -29.03173 -27.98438 -25.61161 -23.87185 -22.67836 -21.99032 -21.35244 -20.19040 -19.21751 -17.81250 -17.38431 -17.16968 -15.79727 -15.64025 -15.16264 -15.12166 -14.44213 -14.05558 -13.93788 -13.78867 -13.59922 -13.16266 -12.97586 -12.84907 -12.68986 -12.51105 -12.32650 -12.30583 -11.56464 -11.54044 -11.29226 -11.10944 -10.90742 -10.67327 -10.36146 -10.27652 -9.98971 -9.91704 -9.62182 -9.42800 -9.22226 -8.91069 -8.80313 -7.27531 -5.74516 -3.10233 2.32656 2.72748 3.20803 3.42945 3.43947 3.51266 3.53777 4.08522 4.22648 4.54999 4.64806 4.83975 4.88883 5.12778 5.22817 5.28715 5.31438 5.49258 5.51658 5.54808 5.67640 5.79230 5.82145 5.89856 5.91794 5.98366 6.04660 6.29091 6.47727 6.53841 6.59394 6.62887 6.76587 6.86816 6.95443 7.32156 7.73497 7.99851 8.14896 8.32675 8.43617 9.21400 9.94713 10.12878 11.42998 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.016068 B = 0.006484 C = 0.005197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.206347 B = 4316.981311 C = 5386.412150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.168 3.832 4 H 0.063 0.937 5 C 0.110 3.890 6 N -0.705 5.705 7 C 0.531 3.469 8 O -0.545 6.545 9 C -0.120 4.120 10 C -0.129 4.129 11 C -0.116 4.116 12 C 0.101 3.899 13 N -0.732 5.732 14 C 0.525 3.475 15 O -0.500 6.500 16 N -0.745 5.745 17 C -0.242 4.242 18 H 0.095 0.905 19 C 0.011 3.989 20 N -0.931 5.931 21 Si 0.880 3.120 22 H -0.289 1.289 23 H -0.274 1.274 24 H -0.293 1.293 25 H 0.032 0.968 26 H 0.042 0.958 27 H 0.088 0.912 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.416 0.584 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.412 0.588 41 H 0.362 0.638 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.357 0.501 6.721 19.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.058 3.942 4 H 0.081 0.919 5 C -0.014 4.014 6 N -0.356 5.356 7 C 0.315 3.685 8 O -0.423 6.423 9 C -0.127 4.127 10 C -0.187 4.187 11 C -0.153 4.153 12 C -0.024 4.024 13 N -0.389 5.389 14 C 0.308 3.692 15 O -0.372 6.372 16 N -0.389 5.389 17 C -0.371 4.371 18 H 0.112 0.888 19 C -0.186 4.186 20 N -0.578 5.578 21 Si 0.711 3.289 22 H -0.216 1.216 23 H -0.200 1.200 24 H -0.219 1.219 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.107 0.893 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.254 0.746 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.127 0.873 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.251 0.749 41 H 0.195 0.805 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 18.033 0.123 6.814 19.278 hybrid contribution 0.555 0.517 -1.736 1.894 sum 18.588 0.641 5.079 19.280 Atomic orbital electron populations 1.21780 0.95158 0.99671 1.03846 1.22038 0.97415 0.97791 1.00034 1.20544 0.89644 0.93070 0.90950 0.91942 1.21789 0.95860 0.82281 1.01462 1.46048 1.07077 1.11288 1.71193 1.19646 0.82898 0.89037 0.76949 1.90652 1.56028 1.45330 1.50303 1.21620 0.98792 0.95561 0.96703 1.21686 1.02324 0.98474 0.96215 1.22743 0.91419 1.04948 0.96234 1.22158 0.88845 0.99495 0.91897 1.46133 1.11442 1.64837 1.16469 1.20365 0.84090 0.78075 0.86625 1.90889 1.23457 1.46117 1.76786 1.42813 1.16852 1.67590 1.11612 1.19011 0.90435 1.27894 0.99801 0.88766 1.24616 0.96281 1.00063 0.97594 1.69694 1.19351 1.42091 1.26693 0.86595 0.81681 0.76904 0.83708 1.21575 1.19995 1.21929 0.94886 0.93866 0.89299 0.92702 0.93571 0.91189 0.91858 0.74586 0.90883 0.91107 0.90555 0.89288 0.87328 0.90660 0.90026 0.74884 0.80524 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.18 37.15 0.34 -2.35 16 2 C -0.13 -2.23 5.61 -26.74 -0.15 -2.38 16 3 C 0.17 3.07 2.59 -67.94 -0.18 2.90 16 4 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 5 C 0.11 1.81 5.23 -4.04 -0.02 1.79 16 6 N -0.70 -11.87 5.25 -60.30 -0.32 -12.19 16 7 C 0.53 8.37 6.55 -10.99 -0.07 8.30 16 8 O -0.54 -9.37 15.46 5.55 0.09 -9.28 16 9 C -0.12 -1.55 0.74 -155.67 -0.12 -1.67 16 10 C -0.13 -1.45 8.31 37.16 0.31 -1.14 16 11 C -0.12 -1.08 6.06 -24.91 -0.15 -1.23 16 12 C 0.10 0.89 7.79 -2.93 -0.02 0.87 16 13 N -0.73 -8.56 6.24 -59.01 -0.37 -8.93 16 14 C 0.53 8.07 7.13 -10.86 -0.08 7.99 16 15 O -0.50 -10.00 17.83 5.55 0.10 -9.90 16 16 N -0.75 -16.89 4.31 -53.43 -0.23 -17.12 16 17 C -0.24 -6.51 8.23 -15.06 -0.12 -6.63 16 18 H 0.09 2.69 7.55 -52.48 -0.40 2.29 16 19 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 20 N -0.93 -29.07 13.97 55.49 0.78 -28.30 16 21 Si 0.88 23.04 27.73 -169.99 -4.71 18.32 16 22 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 23 H -0.27 -7.04 6.52 56.52 0.37 -6.68 16 24 H -0.29 -7.90 7.11 56.52 0.40 -7.50 16 25 H 0.03 0.53 8.14 -51.92 -0.42 0.11 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.09 1.96 5.99 -51.93 -0.31 1.65 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.42 7.64 7.54 -40.82 -0.31 7.33 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.98 7.59 -51.93 -0.39 0.59 16 36 H 0.09 0.62 7.91 -51.93 -0.41 0.21 16 37 H 0.11 1.06 6.94 -51.93 -0.36 0.70 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.41 4.21 8.96 -40.82 -0.37 3.85 16 41 H 0.36 8.52 5.66 -40.82 -0.23 8.28 16 42 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 340.43 15.07 5.13 5.13 Total: -1.00 -33.95 340.43 -6.49 -40.43 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -6.59 Total: 15.18 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -0.36 Total: 6.66 kcal Atomic # 7 Polarization: -66.40 SS G_CDS: -0.14 Total: -66.54 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: 0.18 Total: -19.18 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -4.71 Total: 18.32 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.95 -6.49 -40.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495057997.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.674 kcal (2) G-P(sol) polarization free energy of solvation -33.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds