Wall clock time and date at job start Fri Apr 10 2020 17:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46915 * 2 1 4 4 C 1.52998 * 109.47389 * 120.00143 * 2 1 3 5 5 H 1.09004 * 109.46640 * 60.00100 * 4 2 1 6 6 C 1.53001 * 109.46870 * 179.97438 * 4 2 1 7 7 N 1.46502 * 109.46760 * 175.00324 * 6 4 2 8 8 C 1.34778 * 119.99543 * 179.97438 * 7 6 4 9 9 O 1.21278 * 120.00589 * 359.97438 * 8 7 6 10 10 C 1.50699 * 119.99658 * 180.02562 * 8 7 6 11 11 H 1.09001 * 115.55156 * 58.55437 * 10 8 7 12 12 C 1.53001 * 117.49662 * 204.22308 * 10 8 7 13 13 C 1.53002 * 117.49890 * 272.87924 * 10 8 7 14 14 H 1.09001 * 117.49778 * 145.01725 * 13 10 8 15 15 C 1.50703 * 117.49820 * 0.03019 * 13 10 8 16 16 N 1.34781 * 120.00291 * 85.36252 * 15 13 10 17 17 O 1.21285 * 119.99742 * 265.36925 * 15 13 10 18 18 N 1.46496 * 109.47212 * 299.99726 * 4 2 1 19 19 C 1.36946 * 119.99682 * 85.00126 * 18 4 2 20 20 H 1.07998 * 119.99675 * 0.02562 * 19 18 4 21 21 C 1.38813 * 119.99637 * 179.97438 * 19 18 4 22 22 N 1.31617 * 120.00254 * 0.27785 * 21 19 18 23 23 Si 1.86800 * 119.99599 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47119 * 90.00226 * 23 21 19 25 25 H 1.48502 * 109.47170 * 209.99916 * 23 21 19 26 26 H 1.48501 * 109.47554 * 330.00416 * 23 21 19 27 27 H 1.09000 * 109.47907 * 59.99506 * 1 2 3 28 28 H 1.08996 * 109.47140 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.47042 * 299.99704 * 1 2 3 30 30 H 1.09002 * 109.47041 * 240.00621 * 2 1 3 31 31 H 1.09001 * 109.47157 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47555 * 300.00491 * 3 2 1 33 33 H 1.08997 * 109.47207 * 60.00624 * 3 2 1 34 34 H 1.09003 * 109.46833 * 294.99977 * 6 4 2 35 35 H 1.09001 * 109.47209 * 54.99913 * 6 4 2 36 36 H 0.97000 * 120.00315 * 0.02562 * 7 6 4 37 37 H 1.08997 * 117.49945 * 214.97370 * 12 10 8 38 38 H 1.08997 * 117.50120 * 359.97438 * 12 10 8 39 39 H 0.96997 * 119.99638 * 0.02562 * 16 15 13 40 40 H 0.97000 * 119.99658 * 180.02562 * 16 15 13 41 41 H 0.96995 * 120.00430 * 264.99859 * 18 4 2 42 42 H 0.97004 * 119.99672 * 359.71895 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -1.7490 1.2491 6 6 3.5701 -0.7217 1.2487 7 7 4.0585 -1.3056 2.5005 8 6 5.3836 -1.4105 2.7231 9 8 6.1717 -1.0221 1.8870 10 6 5.8861 -2.0116 4.0104 11 1 5.5585 -3.0314 4.2125 12 6 7.2889 -1.6150 4.4750 13 6 6.0584 -1.0746 5.2077 14 1 5.8444 -1.4781 6.1974 15 6 5.7119 0.3786 5.0094 16 7 4.4385 0.7942 5.1581 17 8 6.5791 1.1741 4.7160 18 7 1.5518 -0.0307 2.4454 19 6 0.3102 -0.3212 2.9448 20 1 -0.3088 -1.0596 2.4570 21 6 -0.1522 0.3328 4.0786 22 7 0.6004 1.2360 4.6704 23 14 -1.8461 -0.0629 4.7594 24 1 -1.7376 -1.1688 5.7446 25 1 -2.4053 1.1406 5.4259 26 1 -2.7420 -0.4752 3.6492 27 1 -0.3635 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 1.8933 -0.5137 -0.8901 31 1 3.1300 1.4426 -0.0005 32 1 1.6765 1.9565 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.9329 -1.3114 0.4069 35 1 3.9337 0.3019 1.1589 36 1 3.4282 -1.6172 3.1687 37 1 7.8840 -2.3738 4.9831 38 1 7.8485 -0.9198 3.8493 39 1 3.7450 0.1580 5.3931 40 1 4.2155 1.7296 5.0301 41 1 2.1079 0.6322 2.8837 42 1 1.4799 1.4416 4.3166 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496603447.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:37 Heat of formation + Delta-G solvation = -52.042099 kcal Electronic energy + Delta-G solvation = -23762.443295 eV Core-core repulsion = 20357.093460 eV Total energy + Delta-G solvation = -3405.349835 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.32217 -38.80643 -37.52823 -35.78125 -33.97482 -33.36905 -33.20230 -30.15714 -28.14739 -26.45041 -25.09289 -24.11542 -23.28617 -21.89978 -20.42947 -19.70785 -18.82657 -17.79180 -17.47768 -16.73685 -16.02784 -15.89368 -15.67688 -14.99368 -14.55076 -14.20224 -13.84560 -13.78268 -13.71343 -13.39425 -13.29921 -12.85961 -12.26592 -11.95903 -11.93720 -11.42278 -11.17966 -10.94452 -10.84543 -10.80495 -10.73109 -10.52907 -10.19363 -10.07602 -9.89740 -9.85003 -9.60434 -9.37112 -9.30432 -9.00802 -8.72301 -7.17779 -6.21629 -3.23030 2.55771 2.81514 3.29040 3.42810 3.46116 3.50575 3.60395 3.89554 4.53895 4.59383 4.69629 4.85764 5.12048 5.22789 5.26622 5.31280 5.41780 5.60730 5.62471 5.64329 5.70429 5.75818 5.99905 6.07167 6.08525 6.23699 6.29803 6.46768 6.52505 6.59697 6.67025 6.82575 6.91844 7.05188 7.24067 7.61611 7.70908 7.80488 8.45514 8.48268 8.62108 9.06704 9.92881 10.09398 11.24908 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.014617 B = 0.006334 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.129796 B = 4419.350184 C = 5530.414689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.107 4.107 3 C -0.141 4.141 4 C 0.174 3.826 5 H 0.055 0.945 6 C 0.110 3.890 7 N -0.707 5.707 8 C 0.532 3.468 9 O -0.540 6.540 10 C -0.168 4.168 11 H 0.136 0.864 12 C -0.115 4.115 13 C -0.170 4.170 14 H 0.137 0.863 15 C 0.541 3.459 16 N -0.835 5.835 17 O -0.544 6.544 18 N -0.728 5.728 19 C -0.323 4.323 20 H 0.067 0.933 21 C -0.042 4.042 22 N -0.942 5.942 23 Si 1.076 2.924 24 H -0.297 1.297 25 H -0.290 1.290 26 H -0.296 1.296 27 H 0.031 0.969 28 H 0.040 0.960 29 H 0.087 0.913 30 H 0.050 0.950 31 H 0.044 0.956 32 H 0.040 0.960 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.408 0.592 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.408 0.592 40 H 0.406 0.594 41 H 0.368 0.632 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.480 -7.229 -0.887 9.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.129 4.129 3 C -0.198 4.198 4 C 0.063 3.937 5 H 0.073 0.927 6 C -0.014 4.014 7 N -0.358 5.358 8 C 0.317 3.683 9 O -0.418 6.418 10 C -0.190 4.190 11 H 0.154 0.846 12 C -0.153 4.153 13 C -0.192 4.192 14 H 0.155 0.845 15 C 0.325 3.675 16 N -0.397 5.397 17 O -0.421 6.421 18 N -0.371 5.371 19 C -0.454 4.454 20 H 0.085 0.915 21 C -0.239 4.239 22 N -0.588 5.588 23 Si 0.908 3.092 24 H -0.225 1.225 25 H -0.216 1.216 26 H -0.223 1.223 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.244 0.756 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.237 0.763 40 H 0.237 0.763 41 H 0.201 0.799 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.438 -6.373 -0.569 8.397 hybrid contribution 0.215 -0.351 -0.758 0.863 sum 5.653 -6.724 -1.328 8.885 Atomic orbital electron populations 1.21818 0.94816 1.00879 1.02063 1.21609 0.96931 0.96455 0.97923 1.21784 0.99682 0.96810 1.01538 1.20475 0.89118 0.95940 0.88119 0.92748 1.21790 0.95674 0.98482 0.85490 1.45896 1.06336 1.62308 1.21262 1.19569 0.82690 0.78777 0.87239 1.90693 1.55670 1.48937 1.46458 1.22344 1.03341 1.00235 0.93067 0.84618 1.22972 0.89405 1.02285 1.00632 1.22337 1.06163 0.92674 0.98019 0.84493 1.19536 0.82898 0.88915 0.76193 1.43811 1.09019 1.14523 1.72372 1.90736 1.48123 1.55598 1.47620 1.42414 1.18174 1.47633 1.28869 1.20038 0.93670 1.21370 1.10296 0.91510 1.25598 1.05519 0.97377 0.95449 1.70906 1.11391 1.34000 1.42456 0.83255 0.74864 0.75622 0.75430 1.22534 1.21604 1.22299 0.95027 0.94128 0.89374 0.93192 0.93665 0.94110 0.91704 0.91905 0.91501 0.75573 0.87055 0.86692 0.76280 0.76300 0.79860 0.93444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 8.26 37.16 0.31 -2.11 16 2 C -0.11 -1.78 2.80 -90.62 -0.25 -2.03 16 3 C -0.14 -2.35 8.69 37.16 0.32 -2.03 16 4 C 0.17 3.00 2.34 -67.93 -0.16 2.84 16 5 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 6 C 0.11 1.80 5.02 -4.04 -0.02 1.78 16 7 N -0.71 -10.86 5.39 -60.29 -0.32 -11.18 16 8 C 0.53 8.61 6.54 -10.99 -0.07 8.53 16 9 O -0.54 -10.82 16.54 5.56 0.09 -10.72 16 10 C -0.17 -2.07 6.18 -91.77 -0.57 -2.63 16 11 H 0.14 1.25 8.14 -51.93 -0.42 0.83 16 12 C -0.12 -1.39 9.56 -26.69 -0.26 -1.64 16 13 C -0.17 -2.08 6.18 -91.73 -0.57 -2.65 16 14 H 0.14 1.25 8.14 -51.93 -0.42 0.82 16 15 C 0.54 8.63 6.80 -10.98 -0.07 8.56 16 16 N -0.83 -12.23 8.87 31.22 0.28 -11.95 16 17 O -0.54 -10.91 17.42 5.55 0.10 -10.81 16 18 N -0.73 -14.65 3.67 -53.42 -0.20 -14.84 16 19 C -0.32 -7.48 7.57 -15.05 -0.11 -7.59 16 20 H 0.07 1.58 7.40 -52.49 -0.39 1.19 16 21 C -0.04 -1.03 5.50 -17.43 -0.10 -1.13 16 22 N -0.94 -24.60 13.70 55.49 0.76 -23.84 16 23 Si 1.08 23.33 29.92 -169.99 -5.09 18.24 16 24 H -0.30 -6.32 7.11 56.52 0.40 -5.91 16 25 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.30 -6.20 7.11 56.52 0.40 -5.80 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 1.82 6.01 -51.92 -0.31 1.51 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.04 0.73 6.32 -51.93 -0.33 0.40 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 1.24 7.60 -51.93 -0.39 0.84 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 1.21 6.18 -51.93 -0.32 0.89 16 36 H 0.41 6.10 8.14 -40.82 -0.33 5.77 16 37 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.11 1.73 7.65 -51.93 -0.40 1.34 16 39 H 0.41 5.69 8.83 -40.82 -0.36 5.33 16 40 H 0.41 6.23 8.93 -40.82 -0.36 5.86 16 41 H 0.37 7.85 6.63 -40.82 -0.27 7.57 16 42 H 0.25 6.39 6.77 -40.82 -0.28 6.11 16 LS Contribution 345.94 15.07 5.21 5.21 Total: -1.00 -29.82 345.94 -7.06 -36.88 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: -6.34 Total: 23.12 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -1.55 Total: -0.10 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: 0.52 Total: -61.82 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: 0.19 Total: -21.53 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -5.09 Total: 18.24 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.82 -7.06 -36.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496603447.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.163 kcal (2) G-P(sol) polarization free energy of solvation -29.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds