Wall clock time and date at job start Fri Apr 10 2020 17:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46915 * 2 1 4 4 C 1.52998 * 109.47389 * 120.00143 * 2 1 3 5 5 H 1.09004 * 109.46640 * 60.00100 * 4 2 1 6 6 C 1.53001 * 109.46870 * 179.97438 * 4 2 1 7 7 N 1.46502 * 109.46760 * 175.00324 * 6 4 2 8 8 C 1.34778 * 119.99543 * 179.97438 * 7 6 4 9 9 O 1.21278 * 120.00589 * 359.97438 * 8 7 6 10 10 C 1.50699 * 119.99658 * 180.02562 * 8 7 6 11 11 H 1.09001 * 115.55156 * 58.55437 * 10 8 7 12 12 C 1.53001 * 117.49662 * 204.22308 * 10 8 7 13 13 C 1.53002 * 117.49890 * 272.87924 * 10 8 7 14 14 H 1.09001 * 117.49778 * 145.01725 * 13 10 8 15 15 C 1.50703 * 117.49820 * 0.03019 * 13 10 8 16 16 N 1.34781 * 120.00291 * 85.36252 * 15 13 10 17 17 O 1.21285 * 119.99742 * 265.36925 * 15 13 10 18 18 N 1.46496 * 109.47212 * 299.99726 * 4 2 1 19 19 C 1.36946 * 119.99682 * 85.00126 * 18 4 2 20 20 H 1.07998 * 119.99675 * 0.02562 * 19 18 4 21 21 C 1.38813 * 119.99637 * 179.97438 * 19 18 4 22 22 N 1.31617 * 120.00254 * 0.27785 * 21 19 18 23 23 Si 1.86800 * 119.99599 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47119 * 90.00226 * 23 21 19 25 25 H 1.48502 * 109.47170 * 209.99916 * 23 21 19 26 26 H 1.48501 * 109.47554 * 330.00416 * 23 21 19 27 27 H 1.09000 * 109.47907 * 59.99506 * 1 2 3 28 28 H 1.08996 * 109.47140 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.47042 * 299.99704 * 1 2 3 30 30 H 1.09002 * 109.47041 * 240.00621 * 2 1 3 31 31 H 1.09001 * 109.47157 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47555 * 300.00491 * 3 2 1 33 33 H 1.08997 * 109.47207 * 60.00624 * 3 2 1 34 34 H 1.09003 * 109.46833 * 294.99977 * 6 4 2 35 35 H 1.09001 * 109.47209 * 54.99913 * 6 4 2 36 36 H 0.97000 * 120.00315 * 0.02562 * 7 6 4 37 37 H 1.08997 * 117.49945 * 214.97370 * 12 10 8 38 38 H 1.08997 * 117.50120 * 359.97438 * 12 10 8 39 39 H 0.96997 * 119.99638 * 0.02562 * 16 15 13 40 40 H 0.97000 * 119.99658 * 180.02562 * 16 15 13 41 41 H 0.96995 * 120.00430 * 264.99859 * 18 4 2 42 42 H 0.97004 * 119.99672 * 359.71895 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -1.7490 1.2491 6 6 3.5701 -0.7217 1.2487 7 7 4.0585 -1.3056 2.5005 8 6 5.3836 -1.4105 2.7231 9 8 6.1717 -1.0221 1.8870 10 6 5.8861 -2.0116 4.0104 11 1 5.5585 -3.0314 4.2125 12 6 7.2889 -1.6150 4.4750 13 6 6.0584 -1.0746 5.2077 14 1 5.8444 -1.4781 6.1974 15 6 5.7119 0.3786 5.0094 16 7 4.4385 0.7942 5.1581 17 8 6.5791 1.1741 4.7160 18 7 1.5518 -0.0307 2.4454 19 6 0.3102 -0.3212 2.9448 20 1 -0.3088 -1.0596 2.4570 21 6 -0.1522 0.3328 4.0786 22 7 0.6004 1.2360 4.6704 23 14 -1.8461 -0.0629 4.7594 24 1 -1.7376 -1.1688 5.7446 25 1 -2.4053 1.1406 5.4259 26 1 -2.7420 -0.4752 3.6492 27 1 -0.3635 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 1.8933 -0.5137 -0.8901 31 1 3.1300 1.4426 -0.0005 32 1 1.6765 1.9565 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.9329 -1.3114 0.4069 35 1 3.9337 0.3019 1.1589 36 1 3.4282 -1.6172 3.1687 37 1 7.8840 -2.3738 4.9831 38 1 7.8485 -0.9198 3.8493 39 1 3.7450 0.1580 5.3931 40 1 4.2155 1.7296 5.0301 41 1 2.1079 0.6322 2.8837 42 1 1.4799 1.4416 4.3166 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496603447.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:36 Heat of formation + Delta-G solvation = -74.958030 kcal Electronic energy + Delta-G solvation = -23763.437005 eV Core-core repulsion = 20357.093460 eV Total energy + Delta-G solvation = -3406.343545 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.54156 -40.15419 -38.98109 -36.92148 -35.40679 -34.98527 -34.53491 -31.77180 -29.64252 -27.85950 -26.32418 -25.45074 -24.83343 -23.21538 -21.60852 -20.98429 -20.20576 -19.30530 -18.95730 -17.93641 -17.26605 -17.17340 -16.99563 -16.40293 -16.08148 -15.56956 -15.51317 -15.22247 -15.03486 -14.74458 -14.66489 -14.15817 -13.70694 -13.43202 -12.97544 -12.87775 -12.74737 -12.59220 -12.40033 -12.08843 -11.89798 -11.79484 -11.63930 -11.47947 -11.39610 -11.15713 -11.09008 -10.94983 -10.73102 -10.67235 -10.06843 -8.93996 -8.12772 -5.09051 1.35154 1.56004 1.68444 1.74854 1.88227 2.09378 2.43145 2.79448 2.80881 3.54840 3.58428 3.69111 3.76951 3.84475 3.86479 4.04624 4.20291 4.25276 4.30488 4.35270 4.58507 4.66848 4.74443 4.83951 4.87208 4.90443 5.05748 5.10172 5.13830 5.20175 5.25163 5.47290 5.50616 5.74950 5.76914 5.84281 6.40373 6.53512 6.73541 7.19050 7.23690 7.26935 8.15006 8.29323 9.37273 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.014617 B = 0.006334 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.129796 B = 4419.350184 C = 5530.414689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.107 4.107 3 C -0.134 4.134 4 C 0.178 3.822 5 H 0.058 0.942 6 C 0.118 3.882 7 N -0.699 5.699 8 C 0.525 3.475 9 O -0.585 6.585 10 C -0.162 4.162 11 H 0.180 0.820 12 C -0.115 4.115 13 C -0.165 4.165 14 H 0.180 0.820 15 C 0.532 3.468 16 N -0.826 5.826 17 O -0.594 6.594 18 N -0.727 5.727 19 C -0.301 4.301 20 H 0.065 0.935 21 C -0.092 4.092 22 N -0.972 5.972 23 Si 1.114 2.886 24 H -0.289 1.289 25 H -0.308 1.308 26 H -0.285 1.285 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.034 0.966 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.413 0.587 37 H 0.155 0.845 38 H 0.077 0.923 39 H 0.413 0.587 40 H 0.399 0.601 41 H 0.361 0.639 42 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.233 -9.591 -0.901 10.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.128 4.128 3 C -0.191 4.191 4 C 0.069 3.931 5 H 0.076 0.924 6 C -0.007 4.007 7 N -0.350 5.350 8 C 0.312 3.688 9 O -0.466 6.466 10 C -0.183 4.183 11 H 0.197 0.803 12 C -0.152 4.152 13 C -0.186 4.186 14 H 0.197 0.803 15 C 0.317 3.683 16 N -0.387 5.387 17 O -0.475 6.475 18 N -0.370 5.370 19 C -0.433 4.433 20 H 0.083 0.917 21 C -0.285 4.285 22 N -0.621 5.621 23 Si 0.944 3.056 24 H -0.216 1.216 25 H -0.235 1.235 26 H -0.211 1.211 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.091 0.909 35 H 0.066 0.934 36 H 0.250 0.750 37 H 0.173 0.827 38 H 0.095 0.905 39 H 0.243 0.757 40 H 0.229 0.771 41 H 0.194 0.806 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.157 -8.787 -0.598 10.206 hybrid contribution 0.282 0.417 -0.869 1.005 sum 5.439 -8.370 -1.468 10.089 Atomic orbital electron populations 1.21714 0.95237 1.00869 1.01140 1.21602 0.96449 0.96370 0.98387 1.21701 0.99786 0.96845 1.00772 1.20549 0.89583 0.95668 0.87347 0.92439 1.21628 0.94814 0.97720 0.86492 1.45845 1.06455 1.61742 1.20930 1.20306 0.82287 0.77997 0.88245 1.90677 1.56617 1.50880 1.48377 1.22465 1.03473 1.01703 0.90668 0.80330 1.23084 0.89444 1.02479 1.00209 1.22464 1.06346 0.89920 0.99885 0.80301 1.20286 0.82410 0.90514 0.75048 1.43808 1.09012 1.14333 1.71500 1.90712 1.49407 1.57393 1.49961 1.42418 1.17280 1.47582 1.29687 1.20147 0.94199 1.19785 1.09180 0.91676 1.26433 1.07495 0.97911 0.96668 1.70959 1.11813 1.35742 1.43582 0.82713 0.72691 0.74865 0.75308 1.21589 1.23536 1.21127 0.93328 0.93606 0.92885 0.90657 0.93413 0.92547 0.94718 0.90920 0.93426 0.75047 0.82732 0.90454 0.75666 0.77050 0.80622 0.93919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.39 8.26 71.98 0.59 -3.80 16 2 C -0.11 -3.34 2.80 -10.79 -0.03 -3.37 16 3 C -0.13 -4.36 8.69 71.98 0.63 -3.73 16 4 C 0.18 5.90 2.34 44.99 0.11 6.01 16 5 H 0.06 1.92 8.08 -2.39 -0.02 1.90 16 6 C 0.12 3.76 5.02 86.38 0.43 4.20 16 7 N -0.70 -20.66 5.39 -463.05 -2.49 -23.15 16 8 C 0.52 16.40 6.54 87.66 0.57 16.97 16 9 O -0.58 -23.51 16.54 -3.02 -0.05 -23.56 16 10 C -0.16 -3.52 6.18 -11.54 -0.07 -3.59 16 11 H 0.18 2.38 8.14 -2.39 -0.02 2.36 16 12 C -0.11 -2.50 9.56 30.62 0.29 -2.21 16 13 C -0.17 -3.62 6.18 -11.51 -0.07 -3.69 16 14 H 0.18 2.44 8.14 -2.39 -0.02 2.43 16 15 C 0.53 16.86 6.80 87.66 0.60 17.46 16 16 N -0.83 -24.31 8.87 -173.52 -1.54 -25.85 16 17 O -0.59 -24.53 17.42 -3.05 -0.05 -24.58 16 18 N -0.73 -28.97 3.67 -322.94 -1.19 -30.16 16 19 C -0.30 -13.75 7.57 84.03 0.64 -13.11 16 20 H 0.07 2.98 7.40 -2.91 -0.02 2.96 16 21 C -0.09 -4.53 5.50 84.86 0.47 -4.06 16 22 N -0.97 -51.22 13.70 21.65 0.30 -50.92 16 23 Si 1.11 46.84 29.92 68.60 2.05 48.89 16 24 H -0.29 -11.60 7.11 99.48 0.71 -10.89 16 25 H -0.31 -13.79 7.11 99.48 0.71 -13.08 16 26 H -0.29 -11.30 7.11 99.48 0.71 -10.59 16 27 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.05 2.14 6.01 -2.38 -0.01 2.13 16 30 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.05 1.51 6.32 -2.39 -0.02 1.50 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.03 1.32 7.60 -2.39 -0.02 1.31 16 34 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.05 1.72 6.18 -2.39 -0.01 1.71 16 36 H 0.41 11.61 8.14 -92.71 -0.75 10.86 16 37 H 0.15 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.08 2.34 7.65 -2.39 -0.02 2.32 16 39 H 0.41 11.31 8.83 -92.71 -0.82 10.49 16 40 H 0.40 12.73 8.93 -92.71 -0.83 11.90 16 41 H 0.36 15.55 6.63 -92.71 -0.61 14.94 16 42 H 0.25 12.80 6.77 -92.71 -0.63 12.17 16 Total: -1.00 -66.59 345.94 -0.62 -67.21 By element: Atomic # 1 Polarization: 56.84 SS G_CDS: -1.80 Total: 55.04 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 4.15 Total: 7.08 kcal Atomic # 7 Polarization: -125.16 SS G_CDS: -4.92 Total: -130.08 kcal Atomic # 8 Polarization: -48.04 SS G_CDS: -0.10 Total: -48.14 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.05 Total: 48.89 kcal Total: -66.59 -0.62 -67.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496603447.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.745 kcal (2) G-P(sol) polarization free energy of solvation -66.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds