Wall clock time and date at job start Fri Apr 10 2020 17:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 C 1.53000 * 109.47146 * 120.00680 * 2 1 3 5 5 C 1.53000 * 109.47214 * 184.99844 * 4 2 1 6 6 N 1.46501 * 109.47067 * 179.97438 * 5 4 2 7 7 C 1.36936 * 119.99988 * 179.97438 * 6 5 4 8 8 H 1.08007 * 119.99998 * 0.02562 * 7 6 5 9 9 C 1.38807 * 120.00312 * 179.97438 * 7 6 5 10 10 N 1.31627 * 119.99750 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00205 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47300 * 60.00051 * 11 9 7 13 13 H 1.48503 * 109.46856 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.46911 * 299.99734 * 11 9 7 15 15 N 1.46506 * 109.46824 * 240.00126 * 2 1 3 16 16 C 1.34777 * 119.99873 * 85.00531 * 15 2 1 17 17 O 1.21284 * 119.99754 * 359.97438 * 16 15 2 18 18 C 1.50696 * 120.00137 * 179.97438 * 16 15 2 19 19 H 1.08998 * 109.29669 * 319.58315 * 18 16 15 20 20 C 1.52922 * 109.29994 * 78.95974 * 18 16 15 21 21 C 1.53353 * 108.67368 * 171.06523 * 20 18 16 22 22 C 1.53067 * 108.42264 * 292.47366 * 21 20 18 23 23 C 1.50165 * 109.89814 * 48.89978 * 22 21 20 24 24 O 1.21282 * 118.25100 * 162.43795 * 23 22 21 25 25 N 1.33362 * 123.50384 * 342.41458 * 23 22 21 26 26 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 27 27 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 28 28 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46768 * 304.99510 * 4 2 1 30 30 H 1.09003 * 109.47442 * 64.99577 * 4 2 1 31 31 H 1.08994 * 109.47015 * 299.99550 * 5 4 2 32 32 H 1.09003 * 109.47135 * 59.99545 * 5 4 2 33 33 H 0.97001 * 119.99987 * 0.02562 * 6 5 4 34 34 H 0.96997 * 119.99903 * 180.02562 * 10 9 7 35 35 H 0.96995 * 120.00050 * 264.72646 * 15 2 1 36 36 H 1.09002 * 109.60552 * 290.82429 * 20 18 16 37 37 H 1.09000 * 109.60460 * 51.30971 * 20 18 16 38 38 H 1.08995 * 109.67261 * 172.73128 * 21 20 18 39 39 H 1.09003 * 109.70051 * 52.22439 * 21 20 18 40 40 H 1.09004 * 109.39601 * 288.76518 * 22 21 20 41 41 H 1.09001 * 109.39512 * 169.03150 * 22 21 20 42 42 H 0.97000 * 117.94223 * 182.23986 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6135 1.3136 6 7 4.0530 -1.3037 2.5100 7 6 5.3951 -1.3405 2.7795 8 1 6.0937 -0.8603 2.1102 9 6 5.8578 -1.9940 3.9133 10 7 5.0064 -2.5788 4.7293 11 14 7.6885 -2.0436 4.2813 12 1 8.2009 -0.6579 4.4318 13 1 7.9202 -2.7970 5.5399 14 1 8.3998 -2.7158 3.1645 15 7 2.0182 -0.6906 -1.1963 16 6 2.1470 -0.0182 -2.3572 17 8 1.8582 1.1585 -2.4116 18 6 2.6498 -0.7284 -3.5875 19 1 3.4608 -1.4012 -3.3089 20 6 1.5109 -1.5435 -4.2015 21 6 1.9681 -2.0765 -5.5648 22 6 2.1311 -0.8901 -6.5181 23 6 2.9423 0.1878 -5.8586 24 8 3.4386 1.0434 -6.5604 25 7 3.1459 0.2547 -4.5423 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6054 -0.2619 2.1369 30 1 1.7516 -1.7717 1.2055 31 1 3.9994 -1.0730 0.4259 32 1 3.8532 0.4368 1.3573 33 1 3.4257 -1.7353 3.1109 34 1 5.3297 -3.0352 5.5218 35 1 2.2527 -1.6308 -1.1518 36 1 1.2644 -2.3789 -3.5462 37 1 0.6353 -0.9076 -4.3324 38 1 1.2203 -2.7644 -5.9593 39 1 2.9214 -2.5938 -5.4562 40 1 1.1483 -0.4964 -6.7774 41 1 2.6377 -1.2212 -7.4247 42 1 3.6559 1.0049 -4.1989 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497206965.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:50 Heat of formation + Delta-G solvation = -80.283632 kcal Electronic energy + Delta-G solvation = -22363.594287 eV Core-core repulsion = 18957.019806 eV Total energy + Delta-G solvation = -3406.574480 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.99723 -39.51918 -36.97907 -36.25747 -34.44852 -33.31829 -32.20196 -30.98585 -29.76504 -27.94727 -25.70242 -24.04018 -23.18433 -21.96344 -21.10966 -20.58074 -19.49256 -17.98497 -17.36031 -17.06778 -16.57771 -15.94539 -15.36634 -15.16670 -14.70163 -14.45467 -14.16772 -14.06715 -14.02196 -13.69245 -13.48632 -13.37963 -12.89124 -12.51111 -12.40049 -11.98550 -11.89066 -11.54106 -11.45590 -11.27950 -11.08158 -10.84574 -10.71243 -10.63955 -10.33451 -10.11875 -9.90632 -9.74759 -9.31152 -9.14863 -8.91031 -6.98112 -5.81491 -3.10675 2.33518 2.36581 2.80074 3.20602 3.41134 3.45771 3.46650 4.16561 4.20916 4.24772 4.35919 4.52451 4.63320 4.79244 4.89291 4.99477 5.14567 5.24591 5.26299 5.28732 5.39981 5.41264 5.49654 5.64131 5.66215 5.68751 5.84866 5.93529 6.15041 6.19323 6.26173 6.39862 6.49609 6.73067 6.78327 7.04588 7.35856 7.64951 7.95195 8.04483 8.37544 9.48637 10.05646 10.40133 11.41271 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.019346 B = 0.003319 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.956096 B = 8433.939164 C = 9193.740217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.144 3.856 3 H 0.089 0.911 4 C -0.135 4.135 5 C 0.154 3.846 6 N -0.734 5.734 7 C -0.242 4.242 8 H 0.069 0.931 9 C -0.013 4.013 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.285 1.285 13 H -0.290 1.290 14 H -0.286 1.286 15 N -0.712 5.712 16 C 0.503 3.497 17 O -0.532 6.532 18 C 0.123 3.877 19 H 0.102 0.898 20 C -0.127 4.127 21 C -0.122 4.122 22 C -0.137 4.137 23 C 0.524 3.476 24 O -0.556 6.556 25 N -0.699 5.699 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.384 0.616 34 H 0.256 0.744 35 H 0.403 0.597 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.244 -1.527 -18.347 21.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.107 0.893 4 C -0.173 4.173 5 C 0.026 3.974 6 N -0.378 5.378 7 C -0.373 4.373 8 H 0.087 0.913 9 C -0.209 4.209 10 N -0.583 5.583 11 Si 0.738 3.262 12 H -0.212 1.212 13 H -0.216 1.216 14 H -0.212 1.212 15 N -0.364 5.364 16 C 0.287 3.713 17 O -0.408 6.408 18 C 0.014 3.986 19 H 0.119 0.881 20 C -0.166 4.166 21 C -0.160 4.160 22 C -0.177 4.177 23 C 0.311 3.689 24 O -0.435 6.435 25 N -0.352 5.352 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.217 0.783 34 H 0.066 0.934 35 H 0.238 0.762 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -11.148 -0.392 -18.831 21.887 hybrid contribution 1.105 -0.415 0.867 1.464 sum -10.043 -0.808 -17.965 20.597 Atomic orbital electron populations 1.22155 0.95281 1.02063 1.02386 1.21028 0.93663 0.97741 0.83569 0.89282 1.22073 0.98091 1.00820 0.96336 1.20631 0.90310 0.95652 0.90770 1.42353 1.05384 1.64987 1.25084 1.19180 0.83815 1.28733 1.05603 0.91296 1.24744 0.97757 1.00804 0.97589 1.69648 1.32926 1.40630 1.15053 0.86261 0.85027 0.77550 0.77314 1.21214 1.21628 1.21236 1.46099 1.66480 1.14394 1.09380 1.20677 0.78376 0.87599 0.84657 1.90744 1.49508 1.15712 1.84809 1.20919 0.98546 0.90835 0.88307 0.88053 1.21871 0.97005 0.99987 0.97691 1.21672 1.03051 0.97292 0.93967 1.21682 1.01638 0.94497 0.99856 1.20149 0.80394 0.86687 0.81698 1.90775 1.50480 1.41063 1.61156 1.45229 1.55668 1.28222 1.06046 0.91423 0.92471 0.92417 0.90136 0.91255 0.96461 0.96459 0.78301 0.93417 0.76175 0.88794 0.90149 0.89797 0.90510 0.88074 0.87914 0.75712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.48 37.16 0.35 -1.30 16 2 C 0.14 1.73 2.57 -67.93 -0.17 1.56 16 3 H 0.09 1.25 7.58 -51.93 -0.39 0.86 16 4 C -0.13 -1.90 4.87 -26.73 -0.13 -2.03 16 5 C 0.15 2.90 6.15 -4.04 -0.02 2.88 16 6 N -0.73 -18.01 5.60 -59.91 -0.34 -18.35 16 7 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 8 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 9 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 10 N -0.93 -27.78 13.06 55.49 0.72 -27.06 16 11 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 15 N -0.71 -7.30 4.53 -53.81 -0.24 -7.54 16 16 C 0.50 5.63 6.95 -10.99 -0.08 5.56 16 17 O -0.53 -8.09 16.04 5.55 0.09 -8.00 16 18 C 0.12 1.02 3.46 -69.53 -0.24 0.78 16 19 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 20 C -0.13 -0.74 5.29 -26.59 -0.14 -0.88 16 21 C -0.12 -0.59 6.03 -26.51 -0.16 -0.75 16 22 C -0.14 -0.96 6.03 -28.11 -0.17 -1.13 16 23 C 0.52 5.96 7.71 -11.87 -0.09 5.87 16 24 O -0.56 -8.78 17.78 5.56 0.10 -8.68 16 25 N -0.70 -7.44 4.79 -56.00 -0.27 -7.71 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.02 0.32 7.75 -51.93 -0.40 -0.08 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.38 9.83 7.67 -40.82 -0.31 9.51 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.40 3.34 8.60 -40.82 -0.35 2.99 16 36 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 38 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.08 0.35 8.13 -51.93 -0.42 -0.07 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.41 4.85 8.44 -40.82 -0.34 4.51 16 LS Contribution 348.69 15.07 5.25 5.25 Total: -1.00 -35.20 348.69 -7.65 -42.85 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -6.84 Total: 8.86 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -1.10 Total: 3.25 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: -0.12 Total: -60.66 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: 0.19 Total: -16.68 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.20 -7.65 -42.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497206965.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.431 kcal (2) G-P(sol) polarization free energy of solvation -35.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds