Wall clock time and date at job start Fri Apr 10 2020 17:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46976 * 2 1 4 4 C 1.52994 * 109.47161 * 239.99926 * 2 1 3 5 5 N 1.46502 * 109.47095 * 184.99980 * 4 2 1 6 6 C 1.46500 * 119.99893 * 269.72464 * 5 4 2 7 7 C 1.36936 * 120.00069 * 89.99747 * 5 4 2 8 8 H 1.08009 * 120.00031 * 20.32368 * 7 5 4 9 9 C 1.38806 * 120.00266 * 200.31550 * 7 5 4 10 10 N 1.31623 * 119.99749 * 14.89476 * 9 7 5 11 11 Si 1.86805 * 120.00206 * 194.89317 * 9 7 5 12 12 H 1.48499 * 109.47067 * 85.00739 * 11 9 7 13 13 H 1.48503 * 109.47216 * 205.00312 * 11 9 7 14 14 H 1.48498 * 109.47114 * 325.00335 * 11 9 7 15 15 N 1.46506 * 109.47065 * 119.99989 * 2 1 3 16 16 C 1.34781 * 119.99707 * 275.00035 * 15 2 1 17 17 O 1.21279 * 119.99835 * 0.02562 * 16 15 2 18 18 C 1.50698 * 119.99976 * 180.02562 * 16 15 2 19 19 C 1.52992 * 109.47144 * 179.97438 * 18 16 15 20 20 H 1.09007 * 110.43615 * 52.46185 * 19 18 16 21 21 C 1.54637 * 110.48445 * 174.99967 * 19 18 16 22 22 C 1.54475 * 101.76155 * 93.88533 * 21 19 18 23 23 N 1.46760 * 105.47913 * 25.41230 * 22 21 19 24 24 C 1.34423 * 111.30001 * 342.98995 * 23 22 21 25 25 O 1.21281 * 124.94319 * 180.44274 * 24 23 22 26 26 H 1.09006 * 109.46982 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47184 * 299.99597 * 1 2 3 28 28 H 1.08994 * 109.47206 * 60.00479 * 1 2 3 29 29 H 1.09002 * 109.47336 * 64.99879 * 4 2 1 30 30 H 1.09001 * 109.47031 * 304.99783 * 4 2 1 31 31 H 1.08996 * 109.47203 * 95.10806 * 6 5 4 32 32 H 1.09000 * 109.46553 * 215.10850 * 6 5 4 33 33 H 1.08998 * 109.46986 * 335.10667 * 6 5 4 34 34 H 0.96999 * 119.99573 * 179.97438 * 10 9 7 35 35 H 0.96995 * 120.00121 * 94.99942 * 15 2 1 36 36 H 1.09003 * 109.47238 * 300.00105 * 18 16 15 37 37 H 1.08999 * 109.47030 * 59.99571 * 18 16 15 38 38 H 1.09005 * 110.96416 * 211.99828 * 21 19 18 39 39 H 1.08998 * 110.97102 * 335.76375 * 21 19 18 40 40 H 1.09004 * 110.24442 * 144.41723 * 22 21 19 41 41 H 1.09007 * 110.24425 * 266.32518 * 22 21 19 42 42 H 0.96996 * 124.35346 * 162.98337 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.3343 0.2312 -1.7666 7 6 4.0850 -1.9158 -0.6022 8 1 3.5230 -2.8299 -0.4791 9 6 5.4003 -1.8455 -0.1641 10 7 5.9909 -0.6757 -0.0399 11 14 6.3321 -3.4109 0.2491 12 1 6.9248 -3.9758 -0.9898 13 1 7.4136 -3.1019 1.2188 14 1 5.3989 -4.3993 0.8468 15 7 2.0184 -0.6906 1.1962 16 6 2.1471 -0.0182 2.3572 17 8 1.8582 1.1584 2.4117 18 6 2.6499 -0.7284 3.5875 19 6 2.7018 0.2548 4.7585 20 1 1.7413 0.7563 4.8773 21 6 3.0951 -0.4771 6.0627 22 6 4.6256 -0.2703 6.0906 23 7 4.8702 0.9506 5.3138 24 6 3.8082 1.2658 4.5525 25 8 3.7462 2.2213 3.8080 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.7517 -0.1583 -2.1370 30 1 1.6054 -1.7198 -1.2950 31 1 4.6156 0.9379 -0.9859 32 1 5.2328 -0.2097 -2.1985 33 1 3.7753 0.7520 -2.5439 34 1 6.9098 -0.6266 0.2666 35 1 2.2491 -1.6318 1.1527 36 1 1.9777 -1.5508 3.8326 37 1 3.6492 -1.1202 3.3979 38 1 2.6228 -0.0124 6.9283 39 1 2.8455 -1.5366 6.0059 40 1 4.9700 -0.1400 7.1166 41 1 5.1295 -1.1198 5.6293 42 1 5.6924 1.4641 5.3457 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498304836.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:52 Heat of formation + Delta-G solvation = -52.258817 kcal Electronic energy + Delta-G solvation = -23912.704734 eV Core-core repulsion = 20507.345501 eV Total energy + Delta-G solvation = -3405.359233 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.29737 -38.64132 -36.21080 -35.99713 -33.86290 -32.54260 -31.24659 -30.05784 -28.56377 -26.13285 -25.66414 -25.53534 -21.94050 -21.63284 -20.56625 -19.64284 -19.31252 -17.20312 -16.78501 -16.29419 -15.69175 -15.41561 -15.03215 -14.74108 -14.20012 -13.76482 -13.51696 -13.36219 -13.23395 -12.89496 -12.79671 -12.50913 -12.39944 -12.13405 -11.96565 -11.56366 -11.32851 -11.28291 -11.09731 -10.85115 -10.78656 -10.68078 -10.33139 -10.17187 -10.03230 -9.79103 -9.31375 -8.91866 -8.83640 -8.54706 -8.06163 -6.75883 -5.70779 -3.15191 3.04858 3.31642 3.39098 3.41108 3.51021 3.61626 4.00617 4.46513 4.50640 4.59750 4.79056 5.13501 5.27807 5.38701 5.47485 5.53072 5.56800 5.63354 5.73920 5.79913 5.86386 5.87837 6.02529 6.08580 6.21427 6.24377 6.34051 6.52247 6.62429 6.80181 6.99690 7.10998 7.30467 7.40991 7.48193 7.72278 7.84462 8.37742 8.48320 8.69070 9.17185 9.22426 9.87819 10.37940 11.32977 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.013058 B = 0.007362 C = 0.005588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.735239 B = 3802.274545 C = 5009.342717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.120 3.880 3 H 0.075 0.925 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.164 3.836 7 C -0.255 4.255 8 H 0.066 0.934 9 C 0.004 3.996 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.289 1.289 13 H -0.293 1.293 14 H -0.280 1.280 15 N -0.692 5.692 16 C 0.507 3.493 17 O -0.535 6.535 18 C -0.125 4.125 19 C -0.105 4.105 20 H 0.109 0.891 21 C -0.132 4.132 22 C 0.102 3.898 23 N -0.742 5.742 24 C 0.520 3.480 25 O -0.494 6.494 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.029 0.971 32 H 0.042 0.958 33 H -0.003 1.003 34 H 0.251 0.749 35 H 0.401 0.599 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.546 -3.365 10.802 13.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.012 3.988 3 H 0.093 0.907 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.019 3.981 7 C -0.385 4.385 8 H 0.084 0.916 9 C -0.195 4.195 10 N -0.539 5.539 11 Si 0.726 3.274 12 H -0.216 1.216 13 H -0.220 1.220 14 H -0.206 1.206 15 N -0.342 5.342 16 C 0.292 3.708 17 O -0.412 6.412 18 C -0.166 4.166 19 C -0.127 4.127 20 H 0.127 0.873 21 C -0.169 4.169 22 C -0.023 4.023 23 N -0.400 5.400 24 C 0.304 3.696 25 O -0.365 6.365 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.015 0.985 34 H 0.061 0.939 35 H 0.236 0.764 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.100 0.900 39 H 0.109 0.891 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -6.710 -2.009 10.430 12.564 hybrid contribution 1.344 -1.169 0.350 1.816 sum -5.366 -3.179 10.780 12.454 Atomic orbital electron populations 1.22146 0.97148 1.00989 1.01413 1.21741 0.91563 0.98421 0.87119 0.90691 1.21171 0.85880 0.97778 0.93753 1.43882 0.98948 1.22802 1.66346 1.20785 0.92813 0.90533 0.93987 1.19053 0.95901 0.89820 1.33680 0.91587 1.24958 0.98607 0.96025 0.99891 1.70119 1.12608 1.21610 1.49576 0.86426 0.79935 0.83202 0.77827 1.21569 1.21956 1.20593 1.45655 1.65844 1.14080 1.08615 1.20248 0.78302 0.87406 0.84836 1.90730 1.50016 1.15222 1.85229 1.21503 1.04035 0.98217 0.92804 1.21674 1.00202 0.96144 0.94665 0.87328 1.22706 0.94888 1.02006 0.97335 1.21984 0.96513 0.87754 0.96013 1.46229 1.18379 1.28799 1.46643 1.20674 0.84105 0.85696 0.79090 1.90823 1.80881 1.29284 1.35544 0.93189 0.93008 0.92491 0.93153 0.93475 0.95258 0.93968 0.98482 0.93863 0.76442 0.88568 0.88557 0.89975 0.89093 0.90755 0.91227 0.75544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 9.48 37.16 0.35 -2.16 16 2 C 0.12 2.35 2.88 -67.93 -0.20 2.16 16 3 H 0.07 1.76 7.58 -51.93 -0.39 1.37 16 4 C 0.14 2.84 5.36 -4.04 -0.02 2.82 16 5 N -0.60 -14.59 2.82 -181.12 -0.51 -15.11 16 6 C 0.16 4.15 9.02 59.85 0.54 4.69 16 7 C -0.25 -6.52 8.02 -15.06 -0.12 -6.64 16 8 H 0.07 1.62 7.86 -52.48 -0.41 1.20 16 9 C 0.00 0.12 5.06 -17.43 -0.09 0.03 16 10 N -0.89 -25.84 10.68 55.49 0.59 -25.25 16 11 Si 0.90 20.84 29.58 -169.99 -5.03 15.82 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 15 N -0.69 -13.64 4.49 -53.80 -0.24 -13.88 16 16 C 0.51 10.29 7.60 -10.98 -0.08 10.20 16 17 O -0.53 -12.81 13.65 -15.00 -0.20 -13.01 16 18 C -0.13 -1.94 5.11 -27.89 -0.14 -2.09 16 19 C -0.10 -1.52 2.54 -90.63 -0.23 -1.75 16 20 H 0.11 1.63 7.90 -51.92 -0.41 1.22 16 21 C -0.13 -1.23 6.71 -25.10 -0.17 -1.40 16 22 C 0.10 1.01 7.78 -3.13 -0.02 0.99 16 23 N -0.74 -10.38 6.24 -59.20 -0.37 -10.75 16 24 C 0.52 9.53 7.43 -10.86 -0.08 9.45 16 25 O -0.49 -11.90 16.22 -15.00 -0.24 -12.14 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.93 7.85 -51.93 -0.41 0.52 16 30 H 0.05 0.88 8.03 -51.93 -0.42 0.46 16 31 H 0.03 0.83 7.41 -51.93 -0.38 0.45 16 32 H 0.04 1.13 7.21 -51.93 -0.37 0.76 16 33 H 0.00 -0.08 7.83 -51.93 -0.41 -0.48 16 34 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.40 7.63 7.40 -40.82 -0.30 7.32 16 36 H 0.10 1.12 8.11 -51.93 -0.42 0.70 16 37 H 0.10 1.61 8.12 -51.93 -0.42 1.19 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.09 0.66 7.87 -51.93 -0.41 0.26 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.41 5.23 8.96 -40.82 -0.37 4.87 16 LS Contribution 341.29 15.07 5.14 5.14 Total: -1.00 -35.43 341.29 -7.92 -43.35 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -6.80 Total: 9.53 kcal Atomic # 6 Polarization: 16.56 SS G_CDS: -0.26 Total: 16.30 kcal Atomic # 7 Polarization: -64.45 SS G_CDS: -0.53 Total: -64.98 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.45 Total: -25.16 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.43 -7.92 -43.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498304836.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.908 kcal (2) G-P(sol) polarization free energy of solvation -35.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds