Wall clock time and date at job start Fri Apr 10 2020 17:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46976 * 2 1 4 4 C 1.52994 * 109.47161 * 239.99926 * 2 1 3 5 5 N 1.46502 * 109.47095 * 184.99980 * 4 2 1 6 6 C 1.46500 * 119.99893 * 269.72464 * 5 4 2 7 7 C 1.36936 * 120.00069 * 89.99747 * 5 4 2 8 8 H 1.08009 * 120.00031 * 20.32368 * 7 5 4 9 9 C 1.38806 * 120.00266 * 200.31550 * 7 5 4 10 10 N 1.31623 * 119.99749 * 14.89476 * 9 7 5 11 11 Si 1.86805 * 120.00206 * 194.89317 * 9 7 5 12 12 H 1.48499 * 109.47067 * 85.00739 * 11 9 7 13 13 H 1.48503 * 109.47216 * 205.00312 * 11 9 7 14 14 H 1.48498 * 109.47114 * 325.00335 * 11 9 7 15 15 N 1.46506 * 109.47065 * 119.99989 * 2 1 3 16 16 C 1.34781 * 119.99707 * 275.00035 * 15 2 1 17 17 O 1.21279 * 119.99835 * 0.02562 * 16 15 2 18 18 C 1.50698 * 119.99976 * 180.02562 * 16 15 2 19 19 C 1.52992 * 109.47144 * 179.97438 * 18 16 15 20 20 H 1.09007 * 110.43615 * 52.46185 * 19 18 16 21 21 C 1.54637 * 110.48445 * 174.99967 * 19 18 16 22 22 C 1.54475 * 101.76155 * 93.88533 * 21 19 18 23 23 N 1.46760 * 105.47913 * 25.41230 * 22 21 19 24 24 C 1.34423 * 111.30001 * 342.98995 * 23 22 21 25 25 O 1.21281 * 124.94319 * 180.44274 * 24 23 22 26 26 H 1.09006 * 109.46982 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47184 * 299.99597 * 1 2 3 28 28 H 1.08994 * 109.47206 * 60.00479 * 1 2 3 29 29 H 1.09002 * 109.47336 * 64.99879 * 4 2 1 30 30 H 1.09001 * 109.47031 * 304.99783 * 4 2 1 31 31 H 1.08996 * 109.47203 * 95.10806 * 6 5 4 32 32 H 1.09000 * 109.46553 * 215.10850 * 6 5 4 33 33 H 1.08998 * 109.46986 * 335.10667 * 6 5 4 34 34 H 0.96999 * 119.99573 * 179.97438 * 10 9 7 35 35 H 0.96995 * 120.00121 * 94.99942 * 15 2 1 36 36 H 1.09003 * 109.47238 * 300.00105 * 18 16 15 37 37 H 1.08999 * 109.47030 * 59.99571 * 18 16 15 38 38 H 1.09005 * 110.96416 * 211.99828 * 21 19 18 39 39 H 1.08998 * 110.97102 * 335.76375 * 21 19 18 40 40 H 1.09004 * 110.24442 * 144.41723 * 22 21 19 41 41 H 1.09007 * 110.24425 * 266.32518 * 22 21 19 42 42 H 0.96996 * 124.35346 * 162.98337 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.3343 0.2312 -1.7666 7 6 4.0850 -1.9158 -0.6022 8 1 3.5230 -2.8299 -0.4791 9 6 5.4003 -1.8455 -0.1641 10 7 5.9909 -0.6757 -0.0399 11 14 6.3321 -3.4109 0.2491 12 1 6.9248 -3.9758 -0.9898 13 1 7.4136 -3.1019 1.2188 14 1 5.3989 -4.3993 0.8468 15 7 2.0184 -0.6906 1.1962 16 6 2.1471 -0.0182 2.3572 17 8 1.8582 1.1584 2.4117 18 6 2.6499 -0.7284 3.5875 19 6 2.7018 0.2548 4.7585 20 1 1.7413 0.7563 4.8773 21 6 3.0951 -0.4771 6.0627 22 6 4.6256 -0.2703 6.0906 23 7 4.8702 0.9506 5.3138 24 6 3.8082 1.2658 4.5525 25 8 3.7462 2.2213 3.8080 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.7517 -0.1583 -2.1370 30 1 1.6054 -1.7198 -1.2950 31 1 4.6156 0.9379 -0.9859 32 1 5.2328 -0.2097 -2.1985 33 1 3.7753 0.7520 -2.5439 34 1 6.9098 -0.6266 0.2666 35 1 2.2491 -1.6318 1.1527 36 1 1.9777 -1.5508 3.8326 37 1 3.6492 -1.1202 3.3979 38 1 2.6228 -0.0124 6.9283 39 1 2.8455 -1.5366 6.0059 40 1 4.9700 -0.1400 7.1166 41 1 5.1295 -1.1198 5.6293 42 1 5.6924 1.4641 5.3457 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498304836.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:52 Heat of formation + Delta-G solvation = -79.120709 kcal Electronic energy + Delta-G solvation = -23913.869553 eV Core-core repulsion = 20507.345501 eV Total energy + Delta-G solvation = -3406.524052 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.56788 -40.18455 -37.97676 -37.36320 -35.64068 -33.80972 -33.07901 -31.63749 -29.63335 -28.06210 -27.35992 -26.85611 -23.64414 -22.63484 -22.16686 -21.17534 -20.68145 -18.77814 -18.37805 -17.75698 -17.16169 -16.78818 -16.74220 -16.22316 -15.68348 -15.43092 -15.02227 -14.90126 -14.61608 -14.45565 -14.31542 -13.89778 -13.56287 -13.52429 -13.23979 -13.09462 -12.88593 -12.82506 -12.68931 -12.50372 -12.18123 -12.10739 -11.93942 -11.92489 -11.84209 -11.64826 -10.76234 -10.58861 -10.48405 -9.99048 -9.67903 -8.77899 -7.74408 -5.21475 1.47704 1.52615 1.58946 1.67287 1.96215 2.52475 2.54340 2.60084 3.39948 3.46553 3.60260 3.73250 3.84454 4.07862 4.20357 4.25144 4.45762 4.52087 4.54946 4.57165 4.67089 4.75676 4.77544 4.82524 4.93032 4.96164 5.01650 5.11176 5.21334 5.24923 5.28529 5.42736 5.65480 5.70753 5.91518 6.02423 6.08580 6.34764 6.92285 7.16961 7.38549 7.63531 7.90890 8.38367 9.29366 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.013058 B = 0.007362 C = 0.005588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.735239 B = 3802.274545 C = 5009.342717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.122 3.878 3 H 0.024 0.976 4 C 0.142 3.858 5 N -0.611 5.611 6 C 0.180 3.820 7 C -0.246 4.246 8 H 0.086 0.914 9 C -0.054 4.054 10 N -0.938 5.938 11 Si 0.961 3.039 12 H -0.296 1.296 13 H -0.306 1.306 14 H -0.252 1.252 15 N -0.691 5.691 16 C 0.491 3.509 17 O -0.580 6.580 18 C -0.116 4.116 19 C -0.103 4.103 20 H 0.099 0.901 21 C -0.114 4.114 22 C 0.093 3.907 23 N -0.736 5.736 24 C 0.499 3.501 25 O -0.572 6.572 26 H 0.076 0.924 27 H 0.037 0.963 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.073 0.927 31 H -0.015 1.015 32 H 0.019 0.981 33 H 0.026 0.974 34 H 0.239 0.761 35 H 0.405 0.595 36 H 0.146 0.854 37 H 0.085 0.915 38 H 0.105 0.895 39 H 0.125 0.875 40 H 0.111 0.889 41 H 0.076 0.924 42 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.115 -6.901 12.286 16.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.014 3.986 3 H 0.043 0.957 4 C 0.015 3.985 5 N -0.333 5.333 6 C 0.035 3.965 7 C -0.376 4.376 8 H 0.104 0.896 9 C -0.249 4.249 10 N -0.585 5.585 11 Si 0.790 3.210 12 H -0.223 1.223 13 H -0.233 1.233 14 H -0.176 1.176 15 N -0.342 5.342 16 C 0.278 3.722 17 O -0.460 6.460 18 C -0.156 4.156 19 C -0.126 4.126 20 H 0.117 0.883 21 C -0.151 4.151 22 C -0.030 4.030 23 N -0.391 5.391 24 C 0.285 3.715 25 O -0.450 6.450 26 H 0.095 0.905 27 H 0.056 0.944 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.003 0.997 32 H 0.038 0.962 33 H 0.044 0.956 34 H 0.049 0.951 35 H 0.241 0.759 36 H 0.164 0.836 37 H 0.104 0.896 38 H 0.123 0.877 39 H 0.143 0.857 40 H 0.130 0.870 41 H 0.094 0.906 42 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -8.308 -5.635 11.952 15.608 hybrid contribution 1.814 -0.037 -0.151 1.821 sum -6.494 -5.673 11.801 14.615 Atomic orbital electron populations 1.21990 0.93697 1.02750 1.01708 1.21600 0.94148 0.95597 0.87265 0.95739 1.21382 0.83212 0.99484 0.94404 1.44140 1.00864 1.22188 1.66127 1.20445 0.92796 0.90092 0.93208 1.19496 0.95872 0.90581 1.31636 0.89595 1.25731 0.99805 0.98532 1.00795 1.70358 1.12161 1.24075 1.51924 0.85373 0.78561 0.80197 0.76886 1.22343 1.23347 1.17556 1.45722 1.65638 1.14181 1.08616 1.21191 0.77537 0.87169 0.86275 1.90716 1.51879 1.17317 1.86057 1.21566 1.04088 0.99192 0.90783 1.21702 0.98365 0.95443 0.97064 0.88267 1.22797 0.94019 1.03508 0.94764 1.22391 0.97380 0.85848 0.97334 1.46400 1.17389 1.29719 1.45591 1.21560 0.86071 0.85454 0.78383 1.90769 1.82621 1.32631 1.39005 0.90524 0.94362 0.90625 0.91408 0.90833 0.99703 0.96236 0.95568 0.95147 0.75866 0.83602 0.89620 0.87683 0.85686 0.87049 0.90586 0.75438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 9.48 71.98 0.68 -3.59 16 2 C 0.12 4.77 2.88 44.99 0.13 4.90 16 3 H 0.02 1.20 7.58 -2.39 -0.02 1.18 16 4 C 0.14 5.40 5.36 86.38 0.46 5.87 16 5 N -0.61 -29.64 2.82 -726.94 -2.05 -31.69 16 6 C 0.18 9.43 9.02 127.77 1.15 10.58 16 7 C -0.25 -12.31 8.02 84.03 0.67 -11.63 16 8 H 0.09 3.92 7.86 -2.91 -0.02 3.90 16 9 C -0.05 -2.88 5.06 84.86 0.43 -2.45 16 10 N -0.94 -56.23 10.68 21.65 0.23 -56.00 16 11 Si 0.96 42.50 29.58 68.60 2.03 44.53 16 12 H -0.30 -13.35 7.11 99.48 0.71 -12.64 16 13 H -0.31 -14.09 7.11 99.48 0.71 -13.38 16 14 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 15 N -0.69 -26.93 4.49 -442.53 -1.99 -28.92 16 16 C 0.49 20.19 7.60 87.66 0.67 20.85 16 17 O -0.58 -29.20 13.65 16.63 0.23 -28.97 16 18 C -0.12 -3.43 5.11 29.84 0.15 -3.28 16 19 C -0.10 -2.89 2.54 -10.80 -0.03 -2.91 16 20 H 0.10 2.95 7.90 -2.38 -0.02 2.93 16 21 C -0.11 -1.66 6.71 31.65 0.21 -1.45 16 22 C 0.09 1.54 7.78 86.83 0.68 2.22 16 23 N -0.74 -20.33 6.24 -459.81 -2.87 -23.20 16 24 C 0.50 18.89 7.43 87.90 0.65 19.55 16 25 O -0.57 -29.73 16.22 16.62 0.27 -29.46 16 26 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 27 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.07 2.35 7.85 -2.39 -0.02 2.33 16 30 H 0.07 2.46 8.03 -2.39 -0.02 2.44 16 31 H -0.02 -0.94 7.41 -2.39 -0.02 -0.96 16 32 H 0.02 1.07 7.21 -2.39 -0.02 1.05 16 33 H 0.03 1.18 7.83 -2.39 -0.02 1.16 16 34 H 0.24 14.29 8.31 -92.71 -0.77 13.52 16 35 H 0.41 14.69 7.40 -92.71 -0.69 14.00 16 36 H 0.15 2.78 8.11 -2.39 -0.02 2.76 16 37 H 0.09 2.75 8.12 -2.39 -0.02 2.73 16 38 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.12 1.07 7.87 -2.39 -0.02 1.05 16 40 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 42 H 0.41 10.70 8.96 -92.71 -0.83 9.87 16 Total: -1.00 -85.03 341.29 1.22 -83.80 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: -0.49 Total: 31.24 kcal Atomic # 6 Polarization: 32.78 SS G_CDS: 5.86 Total: 38.65 kcal Atomic # 7 Polarization: -133.13 SS G_CDS: -6.67 Total: -139.80 kcal Atomic # 8 Polarization: -58.92 SS G_CDS: 0.50 Total: -58.43 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -85.03 1.22 -83.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498304836.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.683 kcal (2) G-P(sol) polarization free energy of solvation -85.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds