Wall clock time and date at job start Fri Apr 10 2020 17:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09000 * 109.46963 * 2 1 4 4 C 1.53000 * 109.46700 * 240.00250 * 2 1 3 5 5 N 1.46502 * 109.46670 * 184.99938 * 4 2 1 6 6 C 1.46498 * 120.00223 * 269.99711 * 5 4 2 7 7 C 1.36937 * 119.99878 * 90.00446 * 5 4 2 8 8 H 1.08005 * 120.00252 * 20.91146 * 7 5 4 9 9 C 1.38810 * 120.00302 * 200.91503 * 7 5 4 10 10 N 1.31618 * 119.99604 * 15.41704 * 9 7 5 11 11 Si 1.86793 * 120.00368 * 195.41639 * 9 7 5 12 12 H 1.48508 * 109.46978 * 90.00048 * 11 9 7 13 13 H 1.48497 * 109.47149 * 209.99741 * 11 9 7 14 14 H 1.48500 * 109.47265 * 330.00277 * 11 9 7 15 15 N 1.46497 * 109.46762 * 120.00678 * 2 1 3 16 16 C 1.34780 * 119.99925 * 274.99480 * 15 2 1 17 17 O 1.21286 * 119.99753 * 0.02562 * 16 15 2 18 18 C 1.50694 * 120.00163 * 180.02562 * 16 15 2 19 19 H 1.09005 * 109.72941 * 300.40379 * 18 16 15 20 20 C 1.53346 * 109.60617 * 180.02562 * 18 16 15 21 21 C 1.53068 * 108.45641 * 172.72919 * 20 18 16 22 22 C 1.50172 * 109.89051 * 48.87946 * 21 20 18 23 23 O 1.21288 * 118.24276 * 162.39587 * 22 21 20 24 24 N 1.33346 * 123.51242 * 342.41262 * 22 21 20 25 25 C 1.45758 * 124.10363 * 2.25166 * 24 22 21 26 26 H 1.09001 * 109.46936 * 299.99564 * 1 2 3 27 27 H 1.08999 * 109.46921 * 59.99364 * 1 2 3 28 28 H 1.09000 * 109.47011 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47317 * 304.99907 * 4 2 1 30 30 H 1.09004 * 109.47157 * 65.00353 * 4 2 1 31 31 H 1.09003 * 109.46599 * 93.87042 * 6 5 4 32 32 H 1.08995 * 109.47599 * 213.87016 * 6 5 4 33 33 H 1.09002 * 109.47151 * 333.87891 * 6 5 4 34 34 H 0.97001 * 120.00163 * 179.97438 * 10 9 7 35 35 H 0.97003 * 120.00270 * 95.00025 * 15 2 1 36 36 H 1.08994 * 109.67737 * 52.96876 * 20 18 16 37 37 H 1.09007 * 109.66862 * 292.47812 * 20 18 16 38 38 H 1.09001 * 109.39828 * 169.01076 * 21 20 18 39 39 H 1.09002 * 109.39622 * 288.83232 * 21 20 18 40 40 H 0.97002 * 117.95269 * 182.22283 * 24 22 21 41 41 H 1.09001 * 109.29788 * 101.21475 * 25 24 22 42 42 H 1.08998 * 109.29752 * 220.78730 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8263 -1.1906 6 6 4.3344 0.2341 -1.7613 7 6 4.0850 -1.9159 -0.6025 8 1 3.5260 -2.8330 -0.4881 9 6 5.3962 -1.8418 -0.1531 10 7 5.9771 -0.6695 -0.0087 11 14 6.3364 -3.4055 0.2467 12 1 7.0422 -3.8833 -0.9695 13 1 7.3275 -3.1273 1.3169 14 1 5.3871 -4.4491 0.7102 15 7 2.0183 -0.6907 1.1961 16 6 2.1471 -0.0185 2.3571 17 8 1.8583 1.1582 2.4118 18 6 2.6499 -0.7288 3.5874 19 1 1.9843 -1.5567 3.8321 20 6 2.7020 0.2536 4.7636 21 6 3.0386 -0.5298 6.0348 22 6 4.2228 -1.4197 5.7880 23 8 4.8210 -1.8583 6.7477 24 7 4.6520 -1.7533 4.5704 25 6 4.0600 -1.2623 3.3323 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6054 -1.7197 -1.2953 30 1 1.7516 -0.1582 -2.1370 31 1 4.5970 0.9489 -0.9815 32 1 5.2433 -0.2020 -2.1756 33 1 3.7834 0.7444 -2.5513 34 1 6.8933 -0.6176 0.3056 35 1 2.2490 -1.6319 1.1525 36 1 1.7337 0.7407 4.8782 37 1 3.4710 1.0044 4.5808 38 1 3.2714 0.1680 6.8392 39 1 2.1821 -1.1400 6.3214 40 1 5.4057 -2.3603 4.5045 41 1 4.6803 -0.4618 2.9290 42 1 4.0087 -2.0769 2.6098 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498325432.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:28:00 Heat of formation + Delta-G solvation = -63.197974 kcal Electronic energy + Delta-G solvation = -24059.637142 eV Core-core repulsion = 20653.803552 eV Total energy + Delta-G solvation = -3405.833590 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.36032 -39.05547 -36.62613 -35.81208 -34.07473 -32.81432 -31.62770 -30.49716 -29.09393 -26.26370 -25.70160 -24.52311 -23.35685 -21.82724 -20.60600 -19.79042 -18.89118 -17.46401 -16.83078 -16.27352 -15.98622 -15.43934 -15.12615 -14.91035 -14.61864 -13.93684 -13.86087 -13.66672 -13.45867 -13.25409 -12.92632 -12.79779 -12.32245 -12.01980 -11.71756 -11.58440 -11.47492 -11.38689 -11.08331 -10.93518 -10.90796 -10.79724 -10.48231 -10.33514 -10.14374 -9.93161 -9.60809 -9.27495 -8.87574 -8.67696 -8.35913 -6.90868 -5.85949 -3.30495 2.77755 3.08744 3.22525 3.31074 3.35293 3.50924 3.76302 4.34100 4.72480 4.74402 4.87344 4.91855 5.23364 5.37166 5.39180 5.39983 5.50027 5.61134 5.73598 5.80718 5.89822 5.91846 5.99003 6.09721 6.18287 6.21374 6.31860 6.38652 6.45345 6.66835 6.81405 6.90561 7.19432 7.28272 7.50039 7.59024 7.68356 8.18608 8.23904 8.34417 8.82942 9.08053 9.72979 10.23319 11.17426 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.013113 B = 0.007964 C = 0.005444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.830001 B = 3514.871239 C = 5142.368370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.118 3.882 3 H 0.077 0.923 4 C 0.142 3.858 5 N -0.597 5.597 6 C 0.163 3.837 7 C -0.257 4.257 8 H 0.066 0.934 9 C 0.010 3.990 10 N -0.894 5.894 11 Si 0.886 3.114 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.279 1.279 15 N -0.685 5.685 16 C 0.527 3.473 17 O -0.555 6.555 18 C -0.122 4.122 19 H 0.098 0.902 20 C -0.102 4.102 21 C -0.134 4.134 22 C 0.517 3.483 23 O -0.571 6.571 24 N -0.713 5.713 25 C 0.119 3.881 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.028 0.972 32 H 0.043 0.957 33 H -0.003 1.003 34 H 0.253 0.747 35 H 0.403 0.597 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.401 0.599 41 H 0.086 0.914 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.651 -0.629 3.523 9.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.010 3.990 3 H 0.095 0.905 4 C 0.013 3.987 5 N -0.319 5.319 6 C 0.018 3.982 7 C -0.387 4.387 8 H 0.084 0.916 9 C -0.190 4.190 10 N -0.538 5.538 11 Si 0.716 3.284 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.204 1.204 15 N -0.334 5.334 16 C 0.311 3.689 17 O -0.434 6.434 18 C -0.144 4.144 19 H 0.116 0.884 20 C -0.140 4.140 21 C -0.173 4.173 22 C 0.304 3.696 23 O -0.451 6.451 24 N -0.363 5.363 25 C -0.005 4.005 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.015 0.985 34 H 0.063 0.937 35 H 0.239 0.761 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.120 0.880 39 H 0.116 0.884 40 H 0.236 0.764 41 H 0.104 0.896 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.546 0.182 4.058 9.462 hybrid contribution 1.119 -1.512 0.015 1.881 sum -7.428 -1.331 4.073 8.575 Atomic orbital electron populations 1.22157 0.96900 1.01238 1.01570 1.21826 0.91778 0.98410 0.86993 0.90493 1.21184 0.85906 0.97919 0.93656 1.43890 0.98905 1.22647 1.66494 1.20785 0.93031 0.90490 0.93885 1.19070 0.96337 0.89690 1.33556 0.91618 1.24888 0.98479 0.95848 0.99771 1.70086 1.13205 1.21440 1.49031 0.86572 0.80386 0.83408 0.78048 1.21495 1.21627 1.20434 1.45751 1.64778 1.14326 1.08554 1.19949 0.77655 0.86975 0.84325 1.90641 1.51659 1.15839 1.85258 1.21593 0.97788 0.99753 0.95261 0.88416 1.21471 1.04116 0.97160 0.91270 1.21664 0.96743 0.98944 0.99977 1.20219 0.85753 0.81077 0.82514 1.90730 1.57858 1.55926 1.40608 1.45508 1.35758 1.49241 1.05829 1.21402 0.92564 1.01416 0.85122 0.92956 0.92284 0.93033 0.93337 0.92976 0.95377 0.93782 0.98460 0.93679 0.76078 0.89725 0.90416 0.88029 0.88358 0.76390 0.89568 0.89013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 9.48 37.16 0.35 -1.85 16 2 C 0.12 1.99 2.88 -67.93 -0.20 1.80 16 3 H 0.08 1.54 7.58 -51.93 -0.39 1.14 16 4 C 0.14 2.48 5.36 -4.04 -0.02 2.46 16 5 N -0.60 -12.97 2.82 -181.12 -0.51 -13.48 16 6 C 0.16 3.69 9.02 59.85 0.54 4.23 16 7 C -0.26 -5.89 8.01 -15.06 -0.12 -6.01 16 8 H 0.07 1.46 7.86 -52.48 -0.41 1.05 16 9 C 0.01 0.23 5.04 -17.43 -0.09 0.14 16 10 N -0.89 -22.95 10.73 55.49 0.60 -22.35 16 11 Si 0.89 19.30 29.58 -169.99 -5.03 14.27 16 12 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 15 N -0.69 -11.54 4.40 -53.80 -0.24 -11.78 16 16 C 0.53 9.07 7.10 -10.99 -0.08 9.00 16 17 O -0.56 -11.24 15.56 5.55 0.09 -11.16 16 18 C -0.12 -1.72 2.60 -91.64 -0.24 -1.96 16 19 H 0.10 1.16 8.12 -51.93 -0.42 0.74 16 20 C -0.10 -1.35 4.71 -26.52 -0.12 -1.47 16 21 C -0.13 -1.61 6.03 -28.10 -0.17 -1.78 16 22 C 0.52 7.99 7.71 -11.88 -0.09 7.90 16 23 O -0.57 -10.80 17.78 5.55 0.10 -10.70 16 24 N -0.71 -10.68 5.45 -61.39 -0.33 -11.01 16 25 C 0.12 1.85 6.33 -4.49 -0.03 1.82 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.80 8.03 -51.93 -0.42 0.39 16 30 H 0.05 0.85 7.87 -51.93 -0.41 0.44 16 31 H 0.03 0.71 7.46 -51.93 -0.39 0.32 16 32 H 0.04 1.08 7.18 -51.93 -0.37 0.71 16 33 H 0.00 -0.06 7.85 -51.93 -0.41 -0.47 16 34 H 0.25 6.50 8.31 -40.82 -0.34 6.16 16 35 H 0.40 6.63 7.07 -40.82 -0.29 6.34 16 36 H 0.08 1.07 7.90 -51.93 -0.41 0.66 16 37 H 0.08 1.14 8.13 -51.92 -0.42 0.72 16 38 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.40 5.93 8.80 -40.82 -0.36 5.57 16 41 H 0.09 1.60 8.11 -51.93 -0.42 1.18 16 42 H 0.09 1.47 7.88 -51.93 -0.41 1.06 16 LS Contribution 340.80 15.07 5.14 5.14 Total: -1.00 -29.09 340.80 -7.24 -36.32 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -6.78 Total: 10.47 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: -0.26 Total: 14.27 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: -0.49 Total: -58.62 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: 0.19 Total: -21.86 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.27 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.09 -7.24 -36.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498325432.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.875 kcal (2) G-P(sol) polarization free energy of solvation -29.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds