Wall clock time and date at job start Fri Apr 10 2020 17:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47494 * 2 1 4 4 C 1.53000 * 109.47317 * 119.99783 * 2 1 3 5 5 N 1.46496 * 109.47718 * 174.99903 * 4 2 1 6 6 C 1.46497 * 120.00064 * 89.99551 * 5 4 2 7 7 C 1.36933 * 120.00199 * 270.00628 * 5 4 2 8 8 H 1.08008 * 119.99754 * 22.01835 * 7 5 4 9 9 C 1.38808 * 120.00148 * 202.02736 * 7 5 4 10 10 N 1.31623 * 120.00217 * 14.13815 * 9 7 5 11 11 Si 1.86800 * 120.00106 * 194.14344 * 9 7 5 12 12 H 1.48493 * 109.47126 * 59.99715 * 11 9 7 13 13 H 1.48497 * 109.47309 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.47243 * 299.99739 * 11 9 7 15 15 N 1.46498 * 109.47286 * 239.99695 * 2 1 3 16 16 C 1.34775 * 119.99724 * 85.00013 * 15 2 1 17 17 O 1.21283 * 120.00616 * 0.02562 * 16 15 2 18 18 C 1.50703 * 119.99920 * 180.02562 * 16 15 2 19 19 H 1.09000 * 109.59956 * 59.67320 * 18 16 15 20 20 C 1.53346 * 109.60733 * 179.97438 * 18 16 15 21 21 C 1.53058 * 108.42836 * 187.28710 * 20 18 16 22 22 C 1.50172 * 109.89291 * 311.10249 * 21 20 18 23 23 O 1.21283 * 118.24863 * 197.55976 * 22 21 20 24 24 N 1.33351 * 123.51088 * 17.58237 * 22 21 20 25 25 C 1.45756 * 124.10416 * 357.77493 * 24 22 21 26 26 H 1.08998 * 109.47375 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47012 * 300.00530 * 1 2 3 28 28 H 1.09000 * 109.47048 * 60.00267 * 1 2 3 29 29 H 1.09000 * 109.47166 * 54.99516 * 4 2 1 30 30 H 1.09004 * 109.47042 * 295.00259 * 4 2 1 31 31 H 1.09008 * 109.46660 * 95.14447 * 6 5 4 32 32 H 1.08994 * 109.47776 * 215.14677 * 6 5 4 33 33 H 1.09001 * 109.47311 * 335.15272 * 6 5 4 34 34 H 0.97000 * 120.00147 * 179.97438 * 10 9 7 35 35 H 0.96998 * 120.00368 * 265.00241 * 15 2 1 36 36 H 1.09003 * 109.67105 * 307.02757 * 20 18 16 37 37 H 1.09007 * 109.66888 * 67.51735 * 20 18 16 38 38 H 1.09001 * 109.39977 * 71.23065 * 21 20 18 39 39 H 1.08995 * 109.40455 * 190.96935 * 21 20 18 40 40 H 0.96997 * 117.95292 * 177.78167 * 24 22 21 41 41 H 1.09003 * 109.30225 * 258.76854 * 25 24 22 42 42 H 1.08997 * 109.30261 * 139.38891 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8264 1.1907 6 6 4.3343 0.2341 1.7612 7 6 4.0849 -1.9158 0.6024 8 1 3.5311 -2.5054 -0.1133 9 6 5.3895 -2.2625 0.9260 10 7 5.9685 -1.7327 1.9826 11 14 6.3235 -3.4810 -0.1382 12 1 6.4254 -2.9528 -1.5223 13 1 7.6864 -3.6799 0.4168 14 1 5.6013 -4.7785 -0.1555 15 7 2.0183 -0.6907 -1.1961 16 6 2.1470 -0.0183 -2.3571 17 8 1.8590 1.1586 -2.4115 18 6 2.6489 -0.7289 -3.5877 19 1 1.9805 -1.5548 -3.8310 20 6 2.7012 0.2536 -4.7638 21 6 3.0364 -0.5305 -6.0348 22 6 4.2201 -1.4212 -5.7885 23 8 4.8169 -1.8614 -6.7483 24 7 4.6500 -1.7545 -4.5710 25 6 4.0589 -1.2629 -3.3326 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6053 -1.7197 1.2953 30 1 1.7516 -0.1582 2.1370 31 1 4.6181 -0.0349 2.7788 32 1 5.2313 0.3570 1.1543 33 1 3.7742 1.1691 1.7754 34 1 6.8800 -1.9753 2.2089 35 1 2.2490 -1.6318 -1.1526 36 1 1.7330 0.7413 -4.8780 37 1 3.4707 1.0039 -4.5812 38 1 2.1787 -1.1392 -6.3215 39 1 3.2691 0.1666 -6.8397 40 1 5.4033 -2.3619 -4.5053 41 1 4.6798 -0.4627 -2.9298 42 1 4.0106 -2.0764 -2.6087 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498325434.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:28:02 Heat of formation + Delta-G solvation = -62.319552 kcal Electronic energy + Delta-G solvation = -23773.310366 eV Core-core repulsion = 20367.514867 eV Total energy + Delta-G solvation = -3405.795499 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.54006 -39.23775 -36.73325 -35.95999 -34.15810 -32.97510 -31.69594 -30.59127 -29.24525 -26.28145 -25.71780 -24.72758 -23.51232 -21.88863 -20.70186 -19.95814 -19.07149 -17.68570 -16.84358 -16.41066 -16.09844 -15.58351 -15.21655 -15.12600 -14.78754 -14.08467 -13.92558 -13.80908 -13.61029 -13.27412 -13.02817 -12.93665 -12.33462 -12.05313 -11.89667 -11.76052 -11.68182 -11.26850 -11.15357 -11.06025 -10.95622 -10.90819 -10.50389 -10.39796 -10.12947 -9.99182 -9.75151 -9.45970 -9.06858 -8.68043 -8.54703 -6.86234 -5.84975 -3.31455 2.63505 2.88750 3.23226 3.27929 3.32296 3.34324 3.56696 4.34521 4.55420 4.57331 4.68202 4.73923 5.20612 5.21703 5.25142 5.32506 5.37083 5.52120 5.56618 5.68542 5.75519 5.76663 5.86085 5.96915 6.07213 6.11072 6.13327 6.37487 6.39743 6.68397 6.74666 6.75025 7.00965 7.28868 7.32924 7.55257 7.67960 7.98232 8.19687 8.25065 8.61296 9.09271 9.73601 10.24343 11.19213 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.013056 B = 0.007280 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.093091 B = 3845.418122 C = 5584.357326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.117 3.883 3 H 0.078 0.922 4 C 0.141 3.859 5 N -0.598 5.598 6 C 0.163 3.837 7 C -0.255 4.255 8 H 0.064 0.936 9 C 0.006 3.994 10 N -0.901 5.901 11 Si 0.896 3.104 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.283 1.283 15 N -0.693 5.693 16 C 0.522 3.478 17 O -0.551 6.551 18 C -0.124 4.124 19 H 0.102 0.898 20 C -0.102 4.102 21 C -0.134 4.134 22 C 0.518 3.482 23 O -0.567 6.567 24 N -0.714 5.714 25 C 0.117 3.883 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.030 0.970 32 H 0.040 0.960 33 H -0.002 1.002 34 H 0.254 0.746 35 H 0.403 0.597 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.402 0.598 41 H 0.079 0.921 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.697 1.518 -7.789 11.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.009 3.991 3 H 0.096 0.904 4 C 0.012 3.988 5 N -0.320 5.320 6 C 0.019 3.981 7 C -0.384 4.384 8 H 0.081 0.919 9 C -0.194 4.194 10 N -0.545 5.545 11 Si 0.725 3.275 12 H -0.209 1.209 13 H -0.216 1.216 14 H -0.209 1.209 15 N -0.343 5.343 16 C 0.307 3.693 17 O -0.429 6.429 18 C -0.146 4.146 19 H 0.120 0.880 20 C -0.140 4.140 21 C -0.174 4.174 22 C 0.305 3.695 23 O -0.446 6.446 24 N -0.366 5.366 25 C -0.007 4.007 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.016 0.984 34 H 0.064 0.936 35 H 0.239 0.761 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.238 0.762 41 H 0.097 0.903 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.584 2.260 -8.193 12.080 hybrid contribution 1.066 -1.407 -0.247 1.782 sum -7.518 0.854 -8.441 11.335 Atomic orbital electron populations 1.22119 0.96484 1.01450 1.01694 1.21896 0.92235 0.98329 0.86626 0.90408 1.21059 0.86142 0.98266 0.93291 1.43810 0.98830 1.21060 1.68346 1.20774 0.92826 0.86265 0.98271 1.18906 0.96730 1.05244 1.17567 0.91868 1.24988 0.98851 0.98776 0.96743 1.70048 1.13812 1.45958 1.24642 0.86500 0.79669 0.81167 0.80115 1.20948 1.21608 1.20884 1.45995 1.65074 1.14379 1.08866 1.20038 0.77906 0.87097 0.84300 1.90659 1.51359 1.15778 1.85128 1.21630 0.97611 1.00023 0.95329 0.88009 1.21477 1.04275 0.97064 0.91206 1.21669 0.96772 0.98978 0.99973 1.20235 0.85722 0.81076 0.82452 1.90743 1.57752 1.55658 1.40497 1.45481 1.35966 1.49425 1.05689 1.21386 0.92651 1.00993 0.85703 0.92876 0.92073 0.92900 0.93000 0.92999 0.95139 0.94157 0.98377 0.93558 0.76088 0.89536 0.90398 0.88210 0.87901 0.76209 0.90314 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.48 37.16 0.35 -1.73 16 2 C 0.12 1.86 2.88 -67.93 -0.20 1.67 16 3 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16 4 C 0.14 2.50 5.30 -4.04 -0.02 2.48 16 5 N -0.60 -13.24 2.82 -181.12 -0.51 -13.75 16 6 C 0.16 3.77 8.98 59.85 0.54 4.31 16 7 C -0.25 -5.97 8.85 -15.06 -0.13 -6.11 16 8 H 0.06 1.36 6.22 -52.48 -0.33 1.03 16 9 C 0.01 0.14 5.08 -17.43 -0.09 0.06 16 10 N -0.90 -24.55 10.72 55.49 0.59 -23.95 16 11 Si 0.90 19.65 29.58 -169.99 -5.03 14.62 16 12 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 13 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 15 N -0.69 -10.64 4.40 -53.81 -0.24 -10.88 16 16 C 0.52 8.01 7.10 -10.98 -0.08 7.93 16 17 O -0.55 -10.11 15.56 5.56 0.09 -10.02 16 18 C -0.12 -1.52 2.60 -91.63 -0.24 -1.76 16 19 H 0.10 1.04 8.12 -51.93 -0.42 0.62 16 20 C -0.10 -1.17 4.71 -26.52 -0.12 -1.29 16 21 C -0.13 -1.43 6.03 -28.11 -0.17 -1.60 16 22 C 0.52 7.23 7.71 -11.87 -0.09 7.13 16 23 O -0.57 -10.00 17.78 5.55 0.10 -9.90 16 24 N -0.71 -9.47 5.45 -61.39 -0.33 -9.80 16 25 C 0.12 1.56 6.33 -4.48 -0.03 1.53 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.90 8.04 -51.93 -0.42 0.48 16 30 H 0.05 0.88 8.07 -51.93 -0.42 0.46 16 31 H 0.03 0.77 7.36 -51.92 -0.38 0.38 16 32 H 0.04 1.01 7.31 -51.93 -0.38 0.63 16 33 H 0.00 -0.05 8.03 -51.93 -0.42 -0.47 16 34 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 35 H 0.40 6.00 6.18 -40.82 -0.25 5.74 16 36 H 0.09 0.96 7.90 -51.93 -0.41 0.55 16 37 H 0.08 0.98 8.13 -51.93 -0.42 0.56 16 38 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.40 5.29 8.80 -40.82 -0.36 4.93 16 41 H 0.08 1.18 8.11 -51.93 -0.42 0.76 16 42 H 0.09 1.24 7.88 -51.93 -0.41 0.83 16 LS Contribution 339.43 15.07 5.12 5.12 Total: -1.00 -30.36 339.43 -7.17 -37.53 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -6.68 Total: 8.41 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: -0.28 Total: 12.63 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: -0.49 Total: -58.39 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: 0.19 Total: -19.92 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.62 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.36 -7.17 -37.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498325434.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.785 kcal (2) G-P(sol) polarization free energy of solvation -30.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds