Wall clock time and date at job start Fri Apr 10 2020 17:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47094 * 2 1 4 4 C 1.53007 * 109.46952 * 240.00551 * 2 1 3 5 5 N 1.46502 * 109.47009 * 184.99693 * 4 2 1 6 6 C 1.46493 * 119.99629 * 90.00144 * 5 4 2 7 7 C 1.36936 * 119.99667 * 269.99809 * 5 4 2 8 8 H 1.08001 * 120.00405 * 22.08476 * 7 5 4 9 9 C 1.38817 * 119.99592 * 202.07401 * 7 5 4 10 10 N 1.31619 * 119.99825 * 13.95289 * 9 7 5 11 11 Si 1.86795 * 119.99969 * 193.94580 * 9 7 5 12 12 H 1.48508 * 109.46973 * 60.00626 * 11 9 7 13 13 H 1.48499 * 109.47179 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47323 * 300.00691 * 11 9 7 15 15 N 1.46492 * 109.47555 * 120.00497 * 2 1 3 16 16 C 1.34781 * 120.00073 * 275.00332 * 15 2 1 17 17 O 1.21278 * 119.99687 * 359.97438 * 16 15 2 18 18 C 1.50694 * 120.00257 * 180.02562 * 16 15 2 19 19 H 1.09009 * 109.73948 * 60.40034 * 18 16 15 20 20 C 1.53340 * 109.60960 * 180.81077 * 18 16 15 21 21 C 1.53066 * 108.42964 * 187.28461 * 20 18 16 22 22 C 1.50166 * 109.89240 * 311.09798 * 21 20 18 23 23 O 1.21285 * 118.25052 * 197.55893 * 22 21 20 24 24 N 1.33363 * 123.50789 * 17.58039 * 22 21 20 25 25 C 1.45753 * 124.10282 * 357.78017 * 24 22 21 26 26 H 1.09006 * 109.47268 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46946 * 299.99141 * 1 2 3 28 28 H 1.09001 * 109.47629 * 59.99239 * 1 2 3 29 29 H 1.09000 * 109.46854 * 304.99495 * 4 2 1 30 30 H 1.08995 * 109.46823 * 64.99874 * 4 2 1 31 31 H 1.08997 * 109.47337 * 95.30387 * 6 5 4 32 32 H 1.09007 * 109.47071 * 215.29910 * 6 5 4 33 33 H 1.09003 * 109.47544 * 335.30105 * 6 5 4 34 34 H 0.97006 * 119.99866 * 179.97438 * 10 9 7 35 35 H 0.97005 * 119.99950 * 94.99723 * 15 2 1 36 36 H 1.09001 * 109.67031 * 67.54627 * 20 18 16 37 37 H 1.09011 * 109.70095 * 307.04130 * 20 18 16 38 38 H 1.09007 * 109.39909 * 190.97018 * 21 20 18 39 39 H 1.09001 * 109.39916 * 71.23282 * 21 20 18 40 40 H 0.96997 * 117.94225 * 177.79782 * 24 22 21 41 41 H 1.09007 * 109.29387 * 139.38673 * 25 24 22 42 42 H 1.08994 * 109.29523 * 258.75528 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 3.5000 -0.8262 -1.1908 6 6 4.1257 -1.9918 -0.5615 7 6 4.2797 0.1650 -1.7242 8 1 3.8743 1.1568 -1.8600 9 6 5.5912 -0.1048 -2.0902 10 7 6.0044 -1.3507 -2.1867 11 14 6.7696 1.3002 -2.4460 12 1 6.9027 2.1527 -1.2373 13 1 8.0992 0.7502 -2.8132 14 1 6.2435 2.1148 -3.5707 15 7 2.0184 -0.6907 1.1960 16 6 2.1471 -0.0184 2.3571 17 8 1.8590 1.1584 2.4115 18 6 2.6500 -0.7287 3.5873 19 1 3.6525 -1.1162 3.4047 20 6 2.6835 0.2487 4.7683 21 6 3.3659 -0.4439 5.9505 22 6 2.7672 -1.8050 6.1602 23 8 2.9499 -2.3545 7.2259 24 7 2.0455 -2.4420 5.2372 25 6 1.7091 -1.8832 3.9338 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.6053 -1.7197 -1.2953 30 1 1.7515 -0.1581 -2.1370 31 1 4.3680 -2.7307 -1.3253 32 1 5.0386 -1.6833 -0.0520 33 1 3.4362 -2.4287 0.1609 34 1 6.9209 -1.5394 -2.4429 35 1 2.2491 -1.6319 1.1524 36 1 1.6661 0.5269 5.0434 37 1 3.2455 1.1408 4.4913 38 1 3.2272 0.1553 6.8505 39 1 4.4316 -0.5448 5.7450 40 1 1.7243 -3.3330 5.4466 41 1 1.7977 -2.6606 3.1749 42 1 0.6823 -1.5180 3.9527 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498325438.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:28:08 Heat of formation + Delta-G solvation = -59.709821 kcal Electronic energy + Delta-G solvation = -23320.474655 eV Core-core repulsion = 19914.792322 eV Total energy + Delta-G solvation = -3405.682333 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.70069 -39.35938 -36.82525 -36.08439 -34.19727 -33.13273 -31.66515 -30.63996 -29.43540 -26.28404 -25.69073 -24.93172 -23.62554 -21.91972 -20.69384 -20.17947 -19.17328 -17.77585 -16.89727 -16.67381 -16.21167 -15.64927 -15.39650 -15.08487 -14.78891 -14.32207 -13.94894 -13.80339 -13.65286 -13.44405 -13.33806 -12.87752 -12.30649 -12.11498 -12.00236 -11.84928 -11.57007 -11.39637 -11.34571 -11.16077 -10.86574 -10.71582 -10.68692 -10.27538 -10.08625 -9.92195 -9.91534 -9.54229 -9.33309 -8.74847 -8.52747 -6.82220 -5.78901 -3.24820 2.46937 2.81038 3.07887 3.36277 3.41836 3.43511 3.45979 4.35804 4.43202 4.45937 4.51744 4.61998 5.04990 5.12560 5.15822 5.24377 5.28229 5.39401 5.47894 5.55671 5.62306 5.72143 5.86359 5.87917 6.01167 6.01912 6.10389 6.36366 6.45466 6.50615 6.53619 6.71702 6.96239 7.07807 7.22150 7.59853 7.75020 7.85046 8.01091 8.31835 8.52159 9.16499 9.79207 10.26378 11.25826 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.017536 B = 0.004636 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.331652 B = 6037.810629 C = 6629.894278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.115 3.885 3 H 0.085 0.915 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.168 3.832 7 C -0.255 4.255 8 H 0.067 0.933 9 C 0.004 3.996 10 N -0.908 5.908 11 Si 0.903 3.097 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.283 1.283 15 N -0.701 5.701 16 C 0.523 3.477 17 O -0.543 6.543 18 C -0.128 4.128 19 H 0.109 0.891 20 C -0.102 4.102 21 C -0.137 4.137 22 C 0.521 3.479 23 O -0.562 6.562 24 N -0.717 5.717 25 C 0.121 3.879 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.040 0.960 30 H 0.063 0.937 31 H 0.032 0.968 32 H 0.041 0.959 33 H -0.009 1.009 34 H 0.253 0.747 35 H 0.396 0.604 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.401 0.599 41 H 0.084 0.916 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.744 -2.147 10.170 14.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.008 3.992 3 H 0.103 0.897 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.023 3.977 7 C -0.385 4.385 8 H 0.085 0.915 9 C -0.194 4.194 10 N -0.553 5.553 11 Si 0.733 3.267 12 H -0.211 1.211 13 H -0.216 1.216 14 H -0.209 1.209 15 N -0.352 5.352 16 C 0.307 3.693 17 O -0.420 6.420 18 C -0.150 4.150 19 H 0.127 0.873 20 C -0.140 4.140 21 C -0.176 4.176 22 C 0.308 3.692 23 O -0.441 6.441 24 N -0.370 5.370 25 C -0.004 4.004 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.009 0.991 34 H 0.063 0.937 35 H 0.232 0.768 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.236 0.764 41 H 0.102 0.898 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.577 -1.440 10.612 14.367 hybrid contribution 0.787 -0.111 -0.371 0.877 sum -8.789 -1.551 10.241 13.585 Atomic orbital electron populations 1.22121 0.96454 1.01283 1.01846 1.21946 0.92142 0.98990 0.86122 0.89720 1.21055 0.85890 0.97523 0.94126 1.43813 0.99066 1.22756 1.66400 1.20815 0.93991 0.89118 0.93791 1.19120 0.93839 0.89838 1.35688 0.91474 1.24965 0.98701 0.96063 0.99690 1.70046 1.16827 1.16758 1.51713 0.86359 0.80375 0.81710 0.78264 1.21083 1.21644 1.20876 1.46085 1.65807 1.13915 1.09380 1.20020 0.77850 0.87227 0.84215 1.90680 1.50408 1.15778 1.85153 1.21668 1.01633 0.96647 0.95021 0.87346 1.21474 1.02509 0.98191 0.91849 1.21702 1.01924 0.92921 1.01079 1.20280 0.77583 0.88209 0.83080 1.90757 1.60213 1.67681 1.25428 1.45414 1.54772 1.20564 1.16207 1.21303 0.98542 0.95915 0.84624 0.93035 0.92912 0.91901 0.94142 0.91873 0.95023 0.94059 0.99064 0.93691 0.76765 0.90565 0.89176 0.87761 0.87850 0.76361 0.89820 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.48 37.15 0.35 -1.69 16 2 C 0.12 1.85 2.88 -67.93 -0.20 1.66 16 3 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 4 C 0.14 2.57 5.29 -4.04 -0.02 2.55 16 5 N -0.60 -13.68 2.78 -181.12 -0.50 -14.19 16 6 C 0.17 3.68 8.52 59.84 0.51 4.19 16 7 C -0.26 -6.71 9.66 -15.06 -0.15 -6.86 16 8 H 0.07 1.76 7.87 -52.49 -0.41 1.35 16 9 C 0.00 0.11 5.08 -17.43 -0.09 0.02 16 10 N -0.91 -25.52 10.71 55.49 0.59 -24.92 16 11 Si 0.90 21.55 29.58 -169.99 -5.03 16.53 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 N -0.70 -10.13 4.43 -53.81 -0.24 -10.37 16 16 C 0.52 7.64 7.11 -10.99 -0.08 7.56 16 17 O -0.54 -9.88 15.55 5.56 0.09 -9.79 16 18 C -0.13 -1.40 2.60 -91.64 -0.24 -1.64 16 19 H 0.11 1.18 8.12 -51.92 -0.42 0.76 16 20 C -0.10 -1.08 4.72 -26.52 -0.13 -1.21 16 21 C -0.14 -1.34 6.03 -28.11 -0.17 -1.51 16 22 C 0.52 6.15 7.71 -11.87 -0.09 6.06 16 23 O -0.56 -8.79 17.78 5.55 0.10 -8.69 16 24 N -0.72 -6.71 5.45 -61.39 -0.33 -7.04 16 25 C 0.12 1.03 6.31 -4.49 -0.03 1.00 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.04 0.66 8.07 -51.93 -0.42 0.24 16 30 H 0.06 1.16 8.04 -51.93 -0.42 0.74 16 31 H 0.03 0.77 7.35 -51.93 -0.38 0.39 16 32 H 0.04 1.00 7.32 -51.92 -0.38 0.62 16 33 H -0.01 -0.16 5.76 -51.93 -0.30 -0.46 16 34 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.40 5.15 5.83 -40.82 -0.24 4.91 16 36 H 0.08 0.81 8.13 -51.93 -0.42 0.39 16 37 H 0.09 1.05 7.89 -51.92 -0.41 0.64 16 38 H 0.10 0.93 8.14 -51.92 -0.42 0.51 16 39 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.40 3.25 8.80 -40.82 -0.36 2.89 16 41 H 0.08 0.58 7.84 -51.92 -0.41 0.17 16 42 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 LS Contribution 338.70 15.07 5.10 5.10 Total: -1.00 -32.80 338.70 -7.17 -39.97 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -6.63 Total: 3.25 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: -0.32 Total: 10.14 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.48 Total: -56.52 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: 0.19 Total: -18.48 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.80 -7.17 -39.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498325438.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.736 kcal (2) G-P(sol) polarization free energy of solvation -32.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds