Wall clock time and date at job start Fri Apr 10 2020 17:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47347 * 2 1 4 4 C 1.53004 * 109.47129 * 240.00125 * 2 1 3 5 5 C 1.52994 * 109.47586 * 175.00164 * 4 2 1 6 6 N 1.46494 * 109.47376 * 180.02562 * 5 4 2 7 7 C 1.36937 * 120.00149 * 179.97438 * 6 5 4 8 8 H 1.08007 * 120.00101 * 0.02562 * 7 6 5 9 9 C 1.38814 * 120.00380 * 179.97438 * 7 6 5 10 10 N 1.31620 * 120.00182 * 180.02562 * 9 7 6 11 11 Si 1.86805 * 119.99729 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.46850 * 90.00261 * 11 9 7 13 13 H 1.48492 * 109.47084 * 209.99997 * 11 9 7 14 14 H 1.48494 * 109.47096 * 330.00160 * 11 9 7 15 15 N 1.46496 * 109.47402 * 120.00454 * 2 1 3 16 16 C 1.34776 * 119.99732 * 274.99921 * 15 2 1 17 17 O 1.21284 * 120.00214 * 359.97438 * 16 15 2 18 18 C 1.50706 * 120.00226 * 179.97438 * 16 15 2 19 19 C 1.53007 * 110.53484 * 302.61253 * 18 16 15 20 20 C 1.54626 * 110.48925 * 180.02562 * 18 16 15 21 21 C 1.54487 * 101.76119 * 266.11750 * 20 18 16 22 22 N 1.46764 * 105.47266 * 334.58313 * 21 20 18 23 23 C 1.34413 * 111.30142 * 17.02131 * 22 21 20 24 24 O 1.21285 * 124.94310 * 179.55801 * 23 22 21 25 25 H 1.09001 * 109.47127 * 59.99197 * 1 2 3 26 26 H 1.09003 * 109.47347 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46736 * 300.00105 * 1 2 3 28 28 H 1.09002 * 109.47088 * 295.00532 * 4 2 1 29 29 H 1.08999 * 109.47081 * 54.99990 * 4 2 1 30 30 H 1.09009 * 109.46968 * 299.99973 * 5 4 2 31 31 H 1.08999 * 109.47053 * 59.99808 * 5 4 2 32 32 H 0.96999 * 120.00302 * 359.97438 * 6 5 4 33 33 H 0.96996 * 119.99641 * 180.02562 * 10 9 7 34 34 H 0.96996 * 120.00749 * 94.99585 * 15 2 1 35 35 H 1.08994 * 109.46927 * 297.38450 * 19 18 16 36 36 H 1.08993 * 109.46945 * 57.38805 * 19 18 16 37 37 H 1.08998 * 109.46334 * 177.38741 * 19 18 16 38 38 H 1.08996 * 110.97243 * 147.99975 * 20 18 16 39 39 H 1.08997 * 110.96807 * 24.23611 * 20 18 16 40 40 H 1.08998 * 110.24579 * 93.58677 * 21 20 18 41 41 H 1.09002 * 110.24411 * 215.49102 * 21 20 18 42 42 H 0.97001 * 124.34584 * 197.03784 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5647 -0.6134 -1.3138 6 7 4.0529 -1.3034 -2.5103 7 6 5.3949 -1.3393 -2.7803 8 1 6.0935 -0.8592 -2.1110 9 6 5.8576 -1.9936 -3.9138 10 7 7.1476 -2.0285 -4.1731 11 14 4.6496 -2.8258 -5.0704 12 1 4.2133 -1.8590 -6.1097 13 1 5.3069 -3.9880 -5.7202 14 1 3.4683 -3.2919 -4.3006 15 7 2.0183 -0.6907 1.1961 16 6 2.1471 -0.0184 2.3570 17 8 1.8590 1.1585 2.4115 18 6 2.6489 -0.7289 3.5877 19 6 1.7572 -1.9281 3.9162 20 6 2.7098 0.2444 4.7876 21 6 4.1745 0.7315 4.7240 22 7 4.9143 -0.3399 4.0466 23 6 4.0828 -1.1715 3.3957 24 8 4.4313 -2.1360 2.7483 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.7515 -1.7715 -1.2057 29 1 1.6053 -0.2617 -2.1370 30 1 3.8531 0.4370 -1.3575 31 1 3.9993 -1.0729 -0.4261 32 1 3.4256 -1.7349 -3.1113 33 1 7.4708 -2.4854 -4.9653 34 1 2.2490 -1.6318 1.1526 35 1 0.7493 -1.5802 4.1421 36 1 1.7257 -2.6025 3.0606 37 1 2.1617 -2.4556 4.7800 38 1 2.5127 -0.2777 5.7239 39 1 2.0165 1.0744 4.6522 40 1 4.2400 1.6561 4.1505 41 1 4.5653 0.8839 5.7301 42 1 5.8794 -0.4356 4.0663 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668209191.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:28:41 Heat of formation + Delta-G solvation = -66.966986 kcal Electronic energy + Delta-G solvation = -23211.514469 eV Core-core repulsion = 19805.517442 eV Total energy + Delta-G solvation = -3405.997027 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.37385 -39.12976 -36.93818 -36.18357 -34.48333 -33.57086 -31.79118 -30.75682 -28.90895 -28.25660 -25.78641 -24.10578 -23.02934 -21.87959 -21.27453 -20.66694 -19.59271 -17.80710 -17.47953 -17.40012 -16.31623 -15.53115 -15.34457 -14.68923 -14.46006 -14.31238 -14.10000 -13.96644 -13.70814 -13.58630 -13.32004 -12.95116 -12.74686 -12.58061 -12.49968 -12.46563 -12.05907 -11.64748 -11.49495 -11.44311 -11.19817 -10.86517 -10.70661 -10.49197 -10.12322 -10.10617 -9.76704 -9.54309 -9.30234 -9.07958 -8.83601 -7.18067 -5.71522 -3.06891 2.17011 2.56914 3.06808 3.23899 3.40683 3.42871 3.48088 3.94049 4.11030 4.39290 4.63106 4.63949 4.73163 4.82826 5.01445 5.15255 5.22734 5.25968 5.33899 5.37294 5.53737 5.57193 5.62852 5.66251 5.71206 5.77303 5.81390 5.93892 5.96454 6.17067 6.21465 6.47032 6.53618 6.76828 6.78323 6.81249 7.45531 8.02961 8.05160 8.11347 8.47339 9.26539 9.98629 10.18642 11.47195 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.019167 B = 0.004492 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.481077 B = 6231.631741 C = 7061.724517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.144 3.856 3 H 0.090 0.910 4 C -0.139 4.139 5 C 0.157 3.843 6 N -0.756 5.756 7 C -0.241 4.241 8 H 0.088 0.912 9 C 0.003 3.997 10 N -0.936 5.936 11 Si 0.886 3.114 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.277 1.277 15 N -0.709 5.709 16 C 0.537 3.463 17 O -0.535 6.535 18 C -0.121 4.121 19 C -0.128 4.128 20 C -0.116 4.116 21 C 0.099 3.901 22 N -0.728 5.728 23 C 0.529 3.471 24 O -0.507 6.507 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.025 0.975 31 H 0.029 0.971 32 H 0.360 0.640 33 H 0.259 0.741 34 H 0.407 0.593 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.086 4.204 20.792 25.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.040 3.960 3 H 0.108 0.892 4 C -0.178 4.178 5 C 0.030 3.970 6 N -0.402 5.402 7 C -0.371 4.371 8 H 0.106 0.894 9 C -0.193 4.193 10 N -0.584 5.584 11 Si 0.717 3.283 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.204 1.204 15 N -0.360 5.360 16 C 0.321 3.679 17 O -0.412 6.412 18 C -0.128 4.128 19 C -0.186 4.186 20 C -0.154 4.154 21 C -0.025 4.025 22 N -0.384 5.384 23 C 0.312 3.688 24 O -0.381 6.381 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.043 0.957 31 H 0.047 0.953 32 H 0.193 0.807 33 H 0.069 0.931 34 H 0.243 0.757 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.127 0.873 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -13.977 4.582 20.471 25.208 hybrid contribution -0.077 -1.087 -0.904 1.416 sum -14.055 3.495 19.567 24.344 Atomic orbital electron populations 1.22157 0.95175 1.02089 1.02409 1.21008 0.93704 0.97717 0.83586 0.89159 1.22120 0.98182 1.00895 0.96577 1.20617 0.90131 0.95887 0.90369 1.42689 1.05322 1.66140 1.26014 1.19068 0.82253 1.29223 1.06596 0.89369 1.24674 0.95616 1.00686 0.98287 1.69708 1.11725 1.48417 1.28534 0.86513 0.80904 0.79453 0.81465 1.21110 1.21736 1.20371 1.46114 1.65893 1.14741 1.09251 1.19624 0.77646 0.86768 0.83845 1.90677 1.50622 1.15308 1.84623 1.21646 0.95816 0.99024 0.96333 1.21671 0.98650 0.95002 1.03236 1.22689 0.97098 0.99562 0.96067 1.22121 0.91593 0.90817 0.97986 1.46129 1.09995 1.28938 1.53357 1.20280 0.87506 0.82426 0.78584 1.90846 1.80679 1.27008 1.39586 0.91449 0.92452 0.92263 0.91320 0.90184 0.95730 0.95321 0.80739 0.93117 0.75689 0.90876 0.90932 0.91014 0.89264 0.87348 0.90415 0.89896 0.74585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.48 37.15 0.35 -1.39 16 2 C 0.14 1.92 2.57 -67.93 -0.17 1.75 16 3 H 0.09 1.34 7.58 -51.93 -0.39 0.94 16 4 C -0.14 -2.12 4.87 -26.73 -0.13 -2.25 16 5 C 0.16 3.22 6.15 -4.05 -0.02 3.20 16 6 N -0.76 -18.90 5.41 -59.91 -0.32 -19.22 16 7 C -0.24 -7.21 10.47 -15.06 -0.16 -7.36 16 8 H 0.09 2.84 8.06 -52.48 -0.42 2.42 16 9 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 10 N -0.94 -30.38 13.97 55.49 0.78 -29.61 16 11 Si 0.89 22.74 27.74 -169.99 -4.71 18.03 16 12 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 14 H -0.28 -6.68 6.52 56.52 0.37 -6.31 16 15 N -0.71 -9.35 4.40 -53.81 -0.24 -9.58 16 16 C 0.54 7.04 6.52 -10.98 -0.07 6.97 16 17 O -0.54 -8.08 15.13 5.55 0.08 -7.99 16 18 C -0.12 -1.28 0.75 -155.67 -0.12 -1.40 16 19 C -0.13 -1.08 8.32 37.16 0.31 -0.77 16 20 C -0.12 -0.90 6.02 -25.10 -0.15 -1.05 16 21 C 0.10 0.76 7.78 -3.12 -0.02 0.74 16 22 N -0.73 -7.49 6.24 -59.20 -0.37 -7.86 16 23 C 0.53 6.96 7.15 -10.86 -0.08 6.88 16 24 O -0.51 -8.74 17.87 5.55 0.10 -8.64 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.02 0.53 8.14 -51.92 -0.42 0.10 16 31 H 0.03 0.63 7.75 -51.93 -0.40 0.23 16 32 H 0.36 8.63 5.53 -40.82 -0.23 8.41 16 33 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 34 H 0.41 5.37 7.90 -40.82 -0.32 5.05 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.67 7.44 -51.93 -0.39 0.28 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.48 7.91 -51.93 -0.41 0.07 16 39 H 0.11 0.89 6.96 -51.93 -0.36 0.53 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.41 3.80 8.96 -40.82 -0.37 3.43 16 LS Contribution 344.91 15.07 5.20 5.20 Total: -1.00 -36.66 344.91 -6.54 -43.20 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -6.69 Total: 11.19 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -0.36 Total: 5.30 kcal Atomic # 7 Polarization: -66.12 SS G_CDS: -0.15 Total: -66.28 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: 0.18 Total: -16.64 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.71 Total: 18.03 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -36.66 -6.54 -43.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668209191.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.768 kcal (2) G-P(sol) polarization free energy of solvation -36.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds