Wall clock time and date at job start Fri Apr 10 2020 17:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47347 * 2 1 4 4 C 1.53004 * 109.47129 * 240.00125 * 2 1 3 5 5 C 1.52994 * 109.47586 * 175.00164 * 4 2 1 6 6 N 1.46494 * 109.47376 * 180.02562 * 5 4 2 7 7 C 1.36937 * 120.00149 * 179.97438 * 6 5 4 8 8 H 1.08007 * 120.00101 * 0.02562 * 7 6 5 9 9 C 1.38814 * 120.00380 * 179.97438 * 7 6 5 10 10 N 1.31620 * 120.00182 * 180.02562 * 9 7 6 11 11 Si 1.86805 * 119.99729 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.46850 * 90.00261 * 11 9 7 13 13 H 1.48492 * 109.47084 * 209.99997 * 11 9 7 14 14 H 1.48494 * 109.47096 * 330.00160 * 11 9 7 15 15 N 1.46496 * 109.47402 * 120.00454 * 2 1 3 16 16 C 1.34776 * 119.99732 * 274.99921 * 15 2 1 17 17 O 1.21284 * 120.00214 * 359.97438 * 16 15 2 18 18 C 1.50706 * 120.00226 * 179.97438 * 16 15 2 19 19 C 1.53007 * 110.53484 * 302.61253 * 18 16 15 20 20 C 1.54626 * 110.48925 * 180.02562 * 18 16 15 21 21 C 1.54487 * 101.76119 * 266.11750 * 20 18 16 22 22 N 1.46764 * 105.47266 * 334.58313 * 21 20 18 23 23 C 1.34413 * 111.30142 * 17.02131 * 22 21 20 24 24 O 1.21285 * 124.94310 * 179.55801 * 23 22 21 25 25 H 1.09001 * 109.47127 * 59.99197 * 1 2 3 26 26 H 1.09003 * 109.47347 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46736 * 300.00105 * 1 2 3 28 28 H 1.09002 * 109.47088 * 295.00532 * 4 2 1 29 29 H 1.08999 * 109.47081 * 54.99990 * 4 2 1 30 30 H 1.09009 * 109.46968 * 299.99973 * 5 4 2 31 31 H 1.08999 * 109.47053 * 59.99808 * 5 4 2 32 32 H 0.96999 * 120.00302 * 359.97438 * 6 5 4 33 33 H 0.96996 * 119.99641 * 180.02562 * 10 9 7 34 34 H 0.96996 * 120.00749 * 94.99585 * 15 2 1 35 35 H 1.08994 * 109.46927 * 297.38450 * 19 18 16 36 36 H 1.08993 * 109.46945 * 57.38805 * 19 18 16 37 37 H 1.08998 * 109.46334 * 177.38741 * 19 18 16 38 38 H 1.08996 * 110.97243 * 147.99975 * 20 18 16 39 39 H 1.08997 * 110.96807 * 24.23611 * 20 18 16 40 40 H 1.08998 * 110.24579 * 93.58677 * 21 20 18 41 41 H 1.09002 * 110.24411 * 215.49102 * 21 20 18 42 42 H 0.97001 * 124.34584 * 197.03784 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5647 -0.6134 -1.3138 6 7 4.0529 -1.3034 -2.5103 7 6 5.3949 -1.3393 -2.7803 8 1 6.0935 -0.8592 -2.1110 9 6 5.8576 -1.9936 -3.9138 10 7 7.1476 -2.0285 -4.1731 11 14 4.6496 -2.8258 -5.0704 12 1 4.2133 -1.8590 -6.1097 13 1 5.3069 -3.9880 -5.7202 14 1 3.4683 -3.2919 -4.3006 15 7 2.0183 -0.6907 1.1961 16 6 2.1471 -0.0184 2.3570 17 8 1.8590 1.1585 2.4115 18 6 2.6489 -0.7289 3.5877 19 6 1.7572 -1.9281 3.9162 20 6 2.7098 0.2444 4.7876 21 6 4.1745 0.7315 4.7240 22 7 4.9143 -0.3399 4.0466 23 6 4.0828 -1.1715 3.3957 24 8 4.4313 -2.1360 2.7483 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.7515 -1.7715 -1.2057 29 1 1.6053 -0.2617 -2.1370 30 1 3.8531 0.4370 -1.3575 31 1 3.9993 -1.0729 -0.4261 32 1 3.4256 -1.7349 -3.1113 33 1 7.4708 -2.4854 -4.9653 34 1 2.2490 -1.6318 1.1526 35 1 0.7493 -1.5802 4.1421 36 1 1.7257 -2.6025 3.0606 37 1 2.1617 -2.4556 4.7800 38 1 2.5127 -0.2777 5.7239 39 1 2.0165 1.0744 4.6522 40 1 4.2400 1.6561 4.1505 41 1 4.5653 0.8839 5.7301 42 1 5.8794 -0.4356 4.0663 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668209191.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:28:40 Heat of formation + Delta-G solvation = -96.869162 kcal Electronic energy + Delta-G solvation = -23212.811125 eV Core-core repulsion = 19805.517442 eV Total energy + Delta-G solvation = -3407.293683 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.30158 -40.18401 -38.15729 -37.32604 -36.21150 -34.47891 -33.68576 -32.11684 -29.82276 -29.59230 -26.56249 -25.77533 -24.16297 -23.11433 -22.69439 -21.79805 -20.60376 -19.71182 -18.61504 -18.37732 -17.42208 -16.72199 -16.45974 -16.18937 -15.95381 -15.52319 -15.42513 -14.98935 -14.93334 -14.71870 -14.64417 -14.32801 -13.94662 -13.58733 -13.40813 -13.33130 -13.21048 -12.99709 -12.96543 -12.46870 -12.29882 -12.22235 -12.14295 -12.04864 -11.87704 -11.77672 -11.13970 -11.02676 -10.80106 -10.17240 -10.13647 -9.36560 -8.07104 -5.42545 1.14990 1.35332 1.41120 1.48446 1.56421 2.13948 2.36397 2.45871 3.16009 3.23579 3.34293 3.39591 3.61938 3.87850 3.96634 4.05614 4.08523 4.21868 4.38073 4.49654 4.57593 4.66409 4.68832 4.71504 4.74204 4.83864 4.96457 5.00001 5.08699 5.13656 5.15074 5.19049 5.31504 5.49588 5.68406 5.70750 5.90036 6.16278 6.40503 7.02758 7.05307 7.10989 7.76291 7.99319 9.14860 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.019167 B = 0.004492 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.481077 B = 6231.631741 C = 7061.724517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.147 3.853 3 H 0.072 0.928 4 C -0.125 4.125 5 C 0.157 3.843 6 N -0.756 5.756 7 C -0.245 4.245 8 H 0.044 0.956 9 C -0.065 4.065 10 N -0.985 5.985 11 Si 0.965 3.035 12 H -0.273 1.273 13 H -0.293 1.293 14 H -0.247 1.247 15 N -0.711 5.711 16 C 0.533 3.467 17 O -0.558 6.558 18 C -0.118 4.118 19 C -0.126 4.126 20 C -0.109 4.109 21 C 0.095 3.905 22 N -0.723 5.723 23 C 0.517 3.483 24 O -0.560 6.560 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.011 0.989 31 H 0.011 0.989 32 H 0.370 0.630 33 H 0.260 0.740 34 H 0.407 0.593 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.121 0.879 39 H 0.106 0.894 40 H 0.067 0.933 41 H 0.121 0.879 42 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.088 3.874 21.580 27.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.043 3.957 3 H 0.090 0.910 4 C -0.163 4.163 5 C 0.031 3.969 6 N -0.402 5.402 7 C -0.376 4.376 8 H 0.062 0.938 9 C -0.256 4.256 10 N -0.635 5.635 11 Si 0.791 3.209 12 H -0.199 1.199 13 H -0.220 1.220 14 H -0.172 1.172 15 N -0.362 5.362 16 C 0.318 3.682 17 O -0.436 6.436 18 C -0.125 4.125 19 C -0.183 4.183 20 C -0.147 4.147 21 C -0.029 4.029 22 N -0.378 5.378 23 C 0.301 3.699 24 O -0.439 6.439 25 H 0.099 0.901 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.115 0.885 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.203 0.797 33 H 0.069 0.931 34 H 0.243 0.757 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.140 0.860 39 H 0.125 0.875 40 H 0.086 0.914 41 H 0.139 0.861 42 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -17.015 4.299 21.316 27.611 hybrid contribution 0.988 -0.878 -1.063 1.696 sum -16.027 3.421 20.253 26.053 Atomic orbital electron populations 1.22061 0.92535 1.03184 1.02958 1.20954 0.95589 0.96335 0.82872 0.91009 1.22005 0.93669 1.02274 0.98327 1.20701 0.94039 0.94195 0.87966 1.42629 1.03541 1.66557 1.27443 1.18992 0.83969 1.28649 1.05960 0.93793 1.25638 0.97848 1.01729 1.00384 1.69912 1.14430 1.49728 1.29443 0.85268 0.78871 0.77973 0.78803 1.19850 1.21965 1.17176 1.46196 1.65823 1.14748 1.09443 1.20069 0.77127 0.86581 0.84450 1.90661 1.51707 1.16200 1.85081 1.21712 0.94259 1.00337 0.96204 1.21718 0.99297 0.93995 1.03321 1.22785 0.96821 0.99004 0.96056 1.22369 0.91687 0.89343 0.99456 1.46292 1.10339 1.28719 1.52411 1.20811 0.88996 0.82033 0.78038 1.90807 1.81736 1.29377 1.41935 0.90057 0.91045 0.92555 0.89976 0.88534 0.97068 0.97103 0.79661 0.93144 0.75697 0.88868 0.92060 0.89665 0.86047 0.87538 0.91423 0.86117 0.74275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.48 71.98 0.68 -2.18 16 2 C 0.15 3.75 2.57 44.99 0.12 3.87 16 3 H 0.07 2.11 7.58 -2.39 -0.02 2.09 16 4 C -0.12 -3.58 4.87 30.59 0.15 -3.44 16 5 C 0.16 6.53 6.15 86.38 0.53 7.06 16 6 N -0.76 -37.60 5.41 -343.46 -1.86 -39.46 16 7 C -0.24 -15.02 10.47 84.03 0.88 -14.14 16 8 H 0.04 3.01 8.06 -2.91 -0.02 2.99 16 9 C -0.06 -3.98 5.50 84.86 0.47 -3.52 16 10 N -0.99 -65.69 13.97 21.65 0.30 -65.39 16 11 Si 0.97 46.53 27.74 68.60 1.90 48.43 16 12 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 13 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 14 H -0.25 -10.62 6.52 99.48 0.65 -9.97 16 15 N -0.71 -18.48 4.40 -442.53 -1.95 -20.43 16 16 C 0.53 13.71 6.52 87.66 0.57 14.28 16 17 O -0.56 -16.57 15.13 -3.04 -0.05 -16.61 16 18 C -0.12 -2.38 0.75 -52.93 -0.04 -2.42 16 19 C -0.13 -1.90 8.32 71.98 0.60 -1.30 16 20 C -0.11 -1.43 6.02 31.65 0.19 -1.24 16 21 C 0.09 1.28 7.78 86.83 0.68 1.96 16 22 N -0.72 -14.62 6.24 -459.80 -2.87 -17.48 16 23 C 0.52 13.69 7.15 87.90 0.63 14.32 16 24 O -0.56 -20.10 17.87 -3.04 -0.05 -20.16 16 25 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.01 0.49 7.75 -2.39 -0.02 0.48 16 32 H 0.37 16.90 5.53 -92.71 -0.51 16.39 16 33 H 0.26 16.33 8.31 -92.71 -0.77 15.56 16 34 H 0.41 10.70 7.90 -92.71 -0.73 9.97 16 35 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.06 1.07 7.44 -2.39 -0.02 1.05 16 37 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.12 0.84 7.91 -2.39 -0.02 0.82 16 39 H 0.11 1.52 6.96 -2.39 -0.02 1.51 16 40 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.42 7.70 8.96 -92.71 -0.83 6.87 16 Total: -1.00 -82.69 344.91 -0.21 -82.90 By element: Atomic # 1 Polarization: 36.04 SS G_CDS: -1.09 Total: 34.95 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 5.45 Total: 13.25 kcal Atomic # 7 Polarization: -136.39 SS G_CDS: -6.37 Total: -142.76 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -0.10 Total: -36.77 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.90 Total: 48.43 kcal Total: -82.69 -0.21 -82.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668209191.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.971 kcal (2) G-P(sol) polarization free energy of solvation -82.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds