Wall clock time and date at job start Fri Apr 10 2020 17:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 C 1.53001 * 109.46944 * 119.99643 * 2 1 3 5 5 C 1.53001 * 109.47204 * 185.00089 * 4 2 1 6 6 N 1.46502 * 109.47379 * 179.97438 * 5 4 2 7 7 C 1.36939 * 119.99956 * 180.02562 * 6 5 4 8 8 H 1.07995 * 119.99804 * 0.02562 * 7 6 5 9 9 C 1.38815 * 119.99506 * 180.02562 * 7 6 5 10 10 N 1.31622 * 119.99743 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 120.00171 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.46944 * 90.00302 * 11 9 7 13 13 H 1.48500 * 109.46850 * 209.99957 * 11 9 7 14 14 H 1.48501 * 109.47211 * 329.99870 * 11 9 7 15 15 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 16 16 C 1.34777 * 119.99665 * 85.27876 * 15 2 1 17 17 O 1.21283 * 119.99990 * 359.71991 * 16 15 2 18 18 C 1.50698 * 119.99538 * 179.72653 * 16 15 2 19 19 C 1.52995 * 110.43954 * 59.29688 * 18 16 15 20 20 C 1.54628 * 110.48553 * 181.83952 * 18 16 15 21 21 C 1.54835 * 101.60888 * 93.91404 * 20 18 16 22 22 N 1.46769 * 105.48836 * 25.43499 * 21 20 18 23 23 C 1.34415 * 111.30107 * 342.96409 * 22 21 20 24 24 O 1.21289 * 124.93786 * 180.44914 * 23 22 21 25 25 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 26 26 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 27 27 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47384 * 305.00224 * 4 2 1 29 29 H 1.08994 * 109.47052 * 65.00451 * 4 2 1 30 30 H 1.08996 * 109.47061 * 300.00333 * 5 4 2 31 31 H 1.09007 * 109.47011 * 60.00308 * 5 4 2 32 32 H 0.97003 * 119.99564 * 0.02562 * 6 5 4 33 33 H 0.96998 * 119.99973 * 179.97438 * 10 9 7 34 34 H 0.97001 * 119.99790 * 264.99588 * 15 2 1 35 35 H 1.08997 * 109.47170 * 60.69742 * 19 18 16 36 36 H 1.08997 * 109.47184 * 180.70238 * 19 18 16 37 37 H 1.09001 * 109.47175 * 300.69984 * 19 18 16 38 38 H 1.08998 * 110.97419 * 211.99842 * 20 18 16 39 39 H 1.09000 * 110.96992 * 335.75749 * 20 18 16 40 40 H 1.08997 * 110.25341 * 266.42146 * 21 20 18 41 41 H 1.08995 * 110.29113 * 144.46507 * 21 20 18 42 42 H 0.97003 * 124.34099 * 162.98600 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 7 4.0531 -1.3032 2.5104 7 6 5.3951 -1.3390 2.7804 8 1 6.0935 -0.8582 2.1115 9 6 5.8577 -1.9933 3.9139 10 7 7.1476 -2.0273 4.1738 11 14 4.6497 -2.8255 5.0704 12 1 4.4460 -4.2333 4.6441 13 1 5.1908 -2.8004 6.4531 14 1 3.3521 -2.1044 5.0335 15 7 2.0184 -0.6906 -1.1961 16 6 2.1524 -0.0169 -2.3557 17 8 1.8639 1.1598 -2.4102 18 6 2.6607 -0.7259 -3.5845 19 6 1.7430 -1.8961 -3.9441 20 6 2.7712 0.2595 -4.7710 21 6 4.2505 0.7053 -4.6690 22 7 4.9454 -0.3949 -3.9902 23 6 4.0772 -1.2109 -3.3682 24 8 4.3848 -2.1929 -2.7261 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6053 -0.2617 2.1370 29 1 1.7517 -1.7714 1.2057 30 1 3.9994 -1.0727 0.4261 31 1 3.8531 0.4371 1.3575 32 1 3.4257 -1.7348 3.1113 33 1 7.4708 -2.4842 4.9660 34 1 2.2491 -1.6318 -1.1525 35 1 0.7409 -1.5213 -4.1525 36 1 2.1315 -2.4046 -4.8264 37 1 1.7028 -2.5961 -3.1096 38 1 2.5798 -0.2462 -5.7174 39 1 2.0969 1.1057 -4.6394 40 1 4.3292 1.6204 -4.0821 41 1 4.6685 0.8586 -5.6639 42 1 5.9077 -0.5170 -3.9902 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668209192.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:28:46 Heat of formation + Delta-G solvation = -67.172249 kcal Electronic energy + Delta-G solvation = -23220.790994 eV Core-core repulsion = 19814.785066 eV Total energy + Delta-G solvation = -3406.005928 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.36672 -39.12515 -36.93760 -36.17677 -34.48118 -33.56449 -31.79404 -30.75764 -28.89293 -28.25723 -25.78252 -24.10608 -23.03257 -21.87822 -21.27633 -20.66562 -19.59381 -17.80197 -17.47703 -17.39950 -16.31724 -15.52846 -15.33421 -14.69184 -14.45844 -14.31036 -14.09782 -13.96699 -13.71597 -13.59201 -13.31503 -12.95192 -12.74911 -12.58131 -12.49007 -12.45748 -12.06209 -11.64725 -11.50398 -11.43546 -11.17867 -10.88291 -10.70344 -10.49002 -10.12450 -10.10697 -9.76635 -9.54587 -9.30162 -9.08186 -8.83594 -7.18224 -5.71720 -3.07075 2.17304 2.56925 3.07114 3.23579 3.40463 3.43044 3.47952 3.94115 4.10800 4.39245 4.63118 4.64036 4.73034 4.82904 5.01668 5.15373 5.22981 5.25967 5.33937 5.37478 5.54054 5.57308 5.63415 5.65560 5.71464 5.77456 5.81468 5.94083 5.96199 6.17053 6.21556 6.47112 6.53702 6.76508 6.78457 6.81080 7.45681 8.02880 8.04919 8.11504 8.47147 9.26312 9.98447 10.18490 11.46994 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.019075 B = 0.004515 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.528239 B = 6200.701247 C = 7032.293140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.144 3.856 3 H 0.090 0.910 4 C -0.140 4.140 5 C 0.157 3.843 6 N -0.756 5.756 7 C -0.242 4.242 8 H 0.088 0.912 9 C 0.003 3.997 10 N -0.936 5.936 11 Si 0.886 3.114 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.278 1.278 15 N -0.709 5.709 16 C 0.537 3.463 17 O -0.535 6.535 18 C -0.121 4.121 19 C -0.128 4.128 20 C -0.116 4.116 21 C 0.099 3.901 22 N -0.728 5.728 23 C 0.529 3.471 24 O -0.508 6.508 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.029 0.971 31 H 0.024 0.976 32 H 0.360 0.640 33 H 0.259 0.741 34 H 0.407 0.593 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.888 4.239 -20.734 25.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.040 3.960 3 H 0.108 0.892 4 C -0.178 4.178 5 C 0.030 3.970 6 N -0.402 5.402 7 C -0.371 4.371 8 H 0.106 0.894 9 C -0.193 4.193 10 N -0.584 5.584 11 Si 0.717 3.283 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.204 1.204 15 N -0.360 5.360 16 C 0.321 3.679 17 O -0.412 6.412 18 C -0.128 4.128 19 C -0.186 4.186 20 C -0.154 4.154 21 C -0.026 4.026 22 N -0.384 5.384 23 C 0.312 3.688 24 O -0.382 6.382 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.042 0.958 32 H 0.193 0.807 33 H 0.069 0.931 34 H 0.243 0.757 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.127 0.873 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -13.803 4.615 -20.416 25.073 hybrid contribution -0.074 -1.084 0.924 1.426 sum -13.877 3.531 -19.492 24.187 Atomic orbital electron populations 1.22155 0.95170 1.02093 1.02401 1.21008 0.93718 0.97711 0.83583 0.89166 1.22120 0.98177 1.00903 0.96578 1.20618 0.90137 0.95863 0.90375 1.42692 1.05294 1.66328 1.25854 1.19065 0.82192 1.29203 1.06685 0.89374 1.24674 0.95618 1.00719 0.98252 1.69709 1.11732 1.48363 1.28582 0.86514 0.80912 0.79854 0.81056 1.21077 1.21743 1.20376 1.46121 1.65862 1.14705 1.09333 1.19625 0.77679 0.86752 0.83832 1.90676 1.50712 1.15319 1.84519 1.21645 0.95871 0.98954 0.96362 1.21670 0.98389 0.95409 1.03094 1.22753 0.96775 0.99673 0.96202 1.22186 0.92216 0.90211 0.97942 1.46131 1.09922 1.28014 1.54338 1.20290 0.87285 0.82714 0.78513 1.90843 1.81980 1.25877 1.39473 0.91451 0.92270 0.92447 0.90191 0.91307 0.95297 0.95785 0.80734 0.93116 0.75661 0.90893 0.91014 0.90898 0.89253 0.87296 0.90428 0.89886 0.74563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.49 37.16 0.35 -1.39 16 2 C 0.14 1.93 2.58 -67.93 -0.17 1.75 16 3 H 0.09 1.34 7.57 -51.93 -0.39 0.94 16 4 C -0.14 -2.13 4.87 -26.73 -0.13 -2.26 16 5 C 0.16 3.23 6.15 -4.04 -0.02 3.20 16 6 N -0.76 -18.90 5.41 -59.91 -0.32 -19.22 16 7 C -0.24 -7.20 10.47 -15.06 -0.16 -7.36 16 8 H 0.09 2.84 8.06 -52.49 -0.42 2.41 16 9 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 10 N -0.94 -30.36 13.97 55.49 0.78 -29.59 16 11 Si 0.89 22.74 27.74 -169.99 -4.71 18.02 16 12 H -0.28 -7.23 7.11 56.52 0.40 -6.82 16 13 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 14 H -0.28 -6.65 6.52 56.52 0.37 -6.29 16 15 N -0.71 -9.36 4.39 -53.81 -0.24 -9.59 16 16 C 0.54 7.04 6.52 -10.99 -0.07 6.97 16 17 O -0.54 -8.08 15.12 5.55 0.08 -7.99 16 18 C -0.12 -1.29 0.74 -155.67 -0.12 -1.40 16 19 C -0.13 -1.08 8.31 37.16 0.31 -0.77 16 20 C -0.12 -0.90 6.06 -24.91 -0.15 -1.05 16 21 C 0.10 0.76 7.79 -2.93 -0.02 0.74 16 22 N -0.73 -7.51 6.24 -59.01 -0.37 -7.88 16 23 C 0.53 6.94 7.13 -10.86 -0.08 6.87 16 24 O -0.51 -8.71 17.83 5.55 0.10 -8.61 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.03 0.63 7.75 -51.93 -0.40 0.23 16 31 H 0.02 0.52 8.14 -51.92 -0.42 0.09 16 32 H 0.36 8.64 5.53 -40.82 -0.23 8.41 16 33 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 34 H 0.41 5.39 8.00 -40.82 -0.33 5.06 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.67 7.59 -51.93 -0.39 0.28 16 38 H 0.09 0.48 7.91 -51.93 -0.41 0.07 16 39 H 0.11 0.90 6.94 -51.93 -0.36 0.54 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.42 3.82 8.96 -40.82 -0.37 3.46 16 LS Contribution 345.08 15.07 5.20 5.20 Total: -1.00 -36.58 345.08 -6.54 -43.13 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -6.70 Total: 11.26 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -0.36 Total: 5.28 kcal Atomic # 7 Polarization: -66.13 SS G_CDS: -0.15 Total: -66.28 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: 0.18 Total: -16.61 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.71 Total: 18.02 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -36.58 -6.54 -43.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668209192.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.046 kcal (2) G-P(sol) polarization free energy of solvation -36.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds