Wall clock time and date at job start Fri Apr 10 2020 17:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 C 1.53001 * 109.46944 * 119.99643 * 2 1 3 5 5 C 1.53001 * 109.47204 * 185.00089 * 4 2 1 6 6 N 1.46502 * 109.47379 * 179.97438 * 5 4 2 7 7 C 1.36939 * 119.99956 * 180.02562 * 6 5 4 8 8 H 1.07995 * 119.99804 * 0.02562 * 7 6 5 9 9 C 1.38815 * 119.99506 * 180.02562 * 7 6 5 10 10 N 1.31618 * 120.00107 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99562 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47375 * 59.99966 * 11 9 7 13 13 H 1.48499 * 109.46906 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47072 * 299.99656 * 11 9 7 15 15 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 16 16 C 1.34777 * 119.99665 * 85.27876 * 15 2 1 17 17 O 1.21283 * 119.99990 * 359.71991 * 16 15 2 18 18 C 1.50698 * 119.99538 * 179.72653 * 16 15 2 19 19 C 1.52998 * 110.43496 * 302.53358 * 18 16 15 20 20 C 1.54632 * 110.48619 * 180.02562 * 18 16 15 21 21 C 1.54486 * 101.76354 * 266.11796 * 20 18 16 22 22 N 1.46765 * 105.47089 * 334.58495 * 21 20 18 23 23 C 1.34415 * 111.30210 * 17.01080 * 22 21 20 24 24 O 1.21279 * 124.94320 * 179.62923 * 23 22 21 25 25 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 26 26 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 27 27 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47384 * 305.00224 * 4 2 1 29 29 H 1.08994 * 109.47052 * 65.00451 * 4 2 1 30 30 H 1.08996 * 109.47061 * 300.00333 * 5 4 2 31 31 H 1.09007 * 109.47011 * 60.00308 * 5 4 2 32 32 H 0.97003 * 119.99564 * 0.02562 * 6 5 4 33 33 H 0.97003 * 119.99889 * 179.97438 * 10 9 7 34 34 H 0.97001 * 119.99790 * 264.99588 * 15 2 1 35 35 H 1.09003 * 109.46919 * 59.30345 * 19 18 16 36 36 H 1.09005 * 109.47339 * 179.29919 * 19 18 16 37 37 H 1.09004 * 109.47554 * 299.30389 * 19 18 16 38 38 H 1.08998 * 110.96864 * 24.22900 * 20 18 16 39 39 H 1.08995 * 110.97201 * 148.00058 * 20 18 16 40 40 H 1.08998 * 110.24554 * 93.58202 * 21 20 18 41 41 H 1.09000 * 110.24522 * 215.49532 * 21 20 18 42 42 H 0.97006 * 124.34655 * 197.04474 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 7 4.0531 -1.3032 2.5104 7 6 5.3951 -1.3390 2.7804 8 1 6.0935 -0.8582 2.1115 9 6 5.8577 -1.9933 3.9139 10 7 5.0064 -2.5788 4.7293 11 14 7.6883 -2.0415 4.2827 12 1 8.1993 -0.6555 4.4347 13 1 7.9200 -2.7949 5.5412 14 1 8.4008 -2.7120 3.1655 15 7 2.0184 -0.6906 -1.1961 16 6 2.1524 -0.0169 -2.3557 17 8 1.8639 1.1598 -2.4102 18 6 2.6607 -0.7259 -3.5845 19 6 4.0362 -1.3399 -3.3165 20 6 2.7281 0.2491 -4.7828 21 6 1.3616 0.0085 -5.4620 22 7 0.9697 -1.3537 -5.0814 23 6 1.6795 -1.7892 -4.0263 24 8 1.5523 -2.8767 -3.5046 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6053 -0.2617 2.1370 29 1 1.7517 -1.7714 1.2057 30 1 3.9994 -1.0727 0.4261 31 1 3.8531 0.4371 1.3575 32 1 3.4257 -1.7348 3.1113 33 1 5.3298 -3.0363 5.5212 34 1 2.2491 -1.6318 -1.1525 35 1 3.9634 -2.0478 -2.4908 36 1 4.3830 -1.8586 -4.2103 37 1 4.7421 -0.5508 -3.0574 38 1 2.8180 1.2805 -4.4419 39 1 3.5477 -0.0117 -5.4523 40 1 0.6277 0.7276 -5.0981 41 1 1.4598 0.0856 -6.5448 42 1 0.2866 -1.8732 -5.5336 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668209193.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:28:48 Heat of formation + Delta-G solvation = -72.276668 kcal Electronic energy + Delta-G solvation = -23012.815706 eV Core-core repulsion = 19606.588434 eV Total energy + Delta-G solvation = -3406.227272 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.41290 -39.13898 -36.93573 -36.18884 -34.34213 -33.57338 -31.75248 -30.53632 -28.92522 -27.85050 -25.77236 -24.12331 -23.12817 -21.95680 -21.41800 -20.55054 -19.57197 -17.80890 -17.55908 -17.01572 -16.25279 -15.61692 -15.20258 -14.81710 -14.56672 -14.22712 -14.06906 -13.87452 -13.75614 -13.40091 -13.29112 -12.95356 -12.80651 -12.62488 -12.43072 -12.31034 -11.89991 -11.64081 -11.42311 -11.17790 -10.99936 -10.75937 -10.61919 -10.55599 -10.18906 -10.05082 -9.77894 -9.67436 -9.43924 -9.01686 -8.83369 -6.90116 -5.74229 -3.02988 2.11262 2.52783 2.98643 3.24361 3.45961 3.49972 3.51247 3.92464 4.08843 4.40943 4.58862 4.67229 4.72923 4.98695 5.00779 5.18053 5.25604 5.37251 5.45254 5.47768 5.57626 5.58610 5.72631 5.74614 5.77968 5.92928 5.96806 6.03100 6.26305 6.29914 6.35674 6.39928 6.53773 6.62651 6.83530 6.88600 7.51168 7.71488 7.89607 8.15238 8.44743 9.55656 10.13653 10.48394 11.48699 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.022309 B = 0.003777 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.780828 B = 7410.770600 C = 7911.921626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.144 3.856 3 H 0.090 0.910 4 C -0.136 4.136 5 C 0.155 3.845 6 N -0.734 5.734 7 C -0.240 4.240 8 H 0.069 0.931 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.907 3.093 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 N -0.707 5.707 16 C 0.537 3.463 17 O -0.536 6.536 18 C -0.120 4.120 19 C -0.131 4.131 20 C -0.117 4.117 21 C 0.100 3.900 22 N -0.729 5.729 23 C 0.532 3.468 24 O -0.516 6.516 25 H 0.067 0.933 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.019 0.981 31 H 0.018 0.982 32 H 0.384 0.616 33 H 0.255 0.745 34 H 0.407 0.593 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.199 5.379 -21.876 24.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.108 0.892 4 C -0.174 4.174 5 C 0.027 3.973 6 N -0.378 5.378 7 C -0.371 4.371 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.738 3.262 12 H -0.213 1.213 13 H -0.217 1.217 14 H -0.213 1.213 15 N -0.358 5.358 16 C 0.320 3.680 17 O -0.414 6.414 18 C -0.127 4.127 19 C -0.189 4.189 20 C -0.155 4.155 21 C -0.024 4.024 22 N -0.385 5.385 23 C 0.316 3.684 24 O -0.390 6.390 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.217 0.783 33 H 0.065 0.935 34 H 0.243 0.757 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.128 0.872 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -9.216 5.731 -21.545 24.125 hybrid contribution 0.593 -0.877 0.218 1.081 sum -8.624 4.855 -21.327 23.511 Atomic orbital electron populations 1.22154 0.95407 1.02124 1.02194 1.21036 0.93637 0.97650 0.83688 0.89176 1.22074 0.98140 1.00948 0.96256 1.20629 0.90318 0.95578 0.90786 1.42358 1.05381 1.65005 1.25043 1.19185 0.83844 1.28572 1.05516 0.91292 1.24739 0.97688 1.00876 0.97666 1.69650 1.32869 1.40641 1.15126 0.86262 0.85145 0.77471 0.77287 1.21274 1.21675 1.21256 1.46131 1.65717 1.14570 1.09405 1.19609 0.77637 0.86840 0.83870 1.90674 1.50521 1.15486 1.84694 1.21646 0.98265 0.96827 0.95974 1.21712 0.92056 1.01553 1.03560 1.22708 0.96947 1.01482 0.94392 1.22135 0.96937 0.83033 1.00342 1.46149 1.40888 1.17722 1.33722 1.20336 0.81228 0.86911 0.79896 1.90791 1.68241 1.22109 1.57890 0.91377 0.92605 0.92453 0.90127 0.91254 0.96368 0.96435 0.78302 0.93470 0.75665 0.90565 0.91091 0.90490 0.87192 0.89146 0.90469 0.89884 0.74884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.49 37.16 0.35 -1.64 16 2 C 0.14 2.04 2.58 -67.93 -0.17 1.86 16 3 H 0.09 1.37 7.57 -51.93 -0.39 0.98 16 4 C -0.14 -2.18 4.87 -26.73 -0.13 -2.31 16 5 C 0.15 3.14 6.15 -4.04 -0.02 3.12 16 6 N -0.73 -18.91 5.60 -59.91 -0.34 -19.25 16 7 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 10 N -0.93 -28.59 13.06 55.49 0.72 -27.87 16 11 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 N -0.71 -9.75 4.40 -53.81 -0.24 -9.99 16 16 C 0.54 7.24 6.52 -10.99 -0.07 7.17 16 17 O -0.54 -8.28 15.13 5.55 0.08 -8.19 16 18 C -0.12 -1.30 0.75 -155.67 -0.12 -1.42 16 19 C -0.13 -1.35 8.30 37.16 0.31 -1.04 16 20 C -0.12 -0.92 6.02 -25.09 -0.15 -1.07 16 21 C 0.10 0.66 7.78 -3.12 -0.02 0.63 16 22 N -0.73 -6.12 6.24 -59.20 -0.37 -6.49 16 23 C 0.53 6.26 7.16 -10.86 -0.08 6.18 16 24 O -0.52 -7.80 17.87 5.56 0.10 -7.70 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.02 0.37 7.75 -51.93 -0.40 -0.03 16 31 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16 32 H 0.38 10.33 7.67 -40.82 -0.31 10.02 16 33 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 34 H 0.41 5.66 7.93 -40.82 -0.32 5.33 16 35 H 0.08 0.89 7.49 -51.93 -0.39 0.50 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.11 0.95 6.96 -51.93 -0.36 0.59 16 39 H 0.09 0.53 7.91 -51.93 -0.41 0.11 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.41 2.71 8.96 -40.82 -0.37 2.34 16 LS Contribution 348.08 15.07 5.25 5.25 Total: -1.00 -34.32 348.08 -6.90 -41.22 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -6.73 Total: 11.41 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -0.36 Total: 3.97 kcal Atomic # 7 Polarization: -63.37 SS G_CDS: -0.22 Total: -63.59 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: 0.18 Total: -15.90 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.32 -6.90 -41.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668209193.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.056 kcal (2) G-P(sol) polarization free energy of solvation -34.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds