Wall clock time and date at job start Fri Apr 10 2020 17:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46870 * 2 1 4 4 H 1.08997 * 109.49016 * 184.13857 * 3 2 1 5 5 C 1.53248 * 109.49018 * 64.09116 * 3 2 1 6 6 N 1.47082 * 108.51395 * 186.23631 * 5 3 2 7 7 C 1.36941 * 120.86153 * 231.18490 * 6 5 3 8 8 H 1.07998 * 120.00121 * 145.15399 * 7 6 5 9 9 C 1.38817 * 119.99630 * 325.16087 * 7 6 5 10 10 N 1.31615 * 119.99873 * 346.94217 * 9 7 6 11 11 Si 1.86804 * 119.99795 * 166.94465 * 9 7 6 12 12 H 1.48499 * 109.46896 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46809 * 120.00119 * 11 9 7 14 14 H 1.48499 * 109.46981 * 239.99979 * 11 9 7 15 15 C 1.47082 * 118.26179 * 51.13678 * 6 5 3 16 16 H 1.09003 * 109.78879 * 68.63590 * 15 6 5 17 17 C 1.53001 * 109.63096 * 189.12117 * 15 6 5 18 18 C 1.52998 * 109.47425 * 184.12009 * 17 15 6 19 19 C 1.53234 * 108.52191 * 308.83333 * 15 6 5 20 20 N 1.46891 * 109.49402 * 304.19532 * 3 2 1 21 21 C 1.46898 * 110.99995 * 307.21102 * 20 3 2 22 22 C 1.53002 * 109.46903 * 162.55392 * 21 20 3 23 23 C 1.53006 * 109.46957 * 187.95782 * 22 21 20 24 24 C 1.53001 * 109.47082 * 307.95454 * 22 21 20 25 25 O 1.42897 * 109.47377 * 67.95686 * 22 21 20 26 26 H 1.09005 * 109.47265 * 292.99850 * 1 2 3 27 27 H 1.09005 * 109.47415 * 173.00235 * 1 2 3 28 28 H 1.09000 * 109.47531 * 52.99995 * 1 2 3 29 29 H 1.08995 * 109.47407 * 120.00066 * 2 1 3 30 30 H 1.08999 * 109.47009 * 240.00345 * 2 1 3 31 31 H 1.08996 * 109.62364 * 305.91231 * 5 3 2 32 32 H 1.08994 * 109.62770 * 66.49897 * 5 3 2 33 33 H 0.97001 * 119.99894 * 180.02562 * 10 9 7 34 34 H 1.09004 * 109.47069 * 304.12480 * 17 15 6 35 35 H 1.09005 * 109.46894 * 64.12023 * 17 15 6 36 36 H 1.09007 * 109.47200 * 302.37261 * 18 17 15 37 37 H 1.09004 * 109.46725 * 62.36770 * 18 17 15 38 38 H 1.08990 * 109.47357 * 182.37043 * 18 17 15 39 39 H 1.09000 * 109.49639 * 293.87078 * 19 15 6 40 40 H 1.08998 * 109.51718 * 173.80092 * 19 15 6 41 41 H 1.08997 * 109.47336 * 282.54973 * 21 20 3 42 42 H 1.09001 * 109.47014 * 42.55488 * 21 20 3 43 43 H 1.08992 * 109.47404 * 59.99551 * 23 22 21 44 44 H 1.09004 * 109.46849 * 179.97438 * 23 22 21 45 45 H 1.09001 * 109.46779 * 299.99690 * 23 22 21 46 46 H 1.09000 * 109.47093 * 60.00132 * 24 22 21 47 47 H 1.09003 * 109.46768 * 180.02562 * 24 22 21 48 48 H 1.09005 * 109.46925 * 300.00040 * 24 22 21 49 49 H 0.96700 * 114.00322 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1274 1.4438 -0.0742 5 6 1.6152 2.1350 1.2995 6 7 1.9834 3.5563 1.2132 7 6 2.6993 4.1585 2.2133 8 1 3.4211 4.9254 1.9743 9 6 2.4972 3.7829 3.5344 10 7 1.4547 3.0472 3.8572 11 14 3.7049 4.3217 4.8537 12 1 4.7824 5.1355 4.2358 13 1 2.9940 5.1345 5.8732 14 1 4.2977 3.1239 5.5010 15 6 1.5637 4.3136 0.0242 16 1 0.4804 4.4347 0.0273 17 6 2.2345 5.6887 0.0273 18 6 1.7171 6.5113 -1.1544 19 6 1.9910 3.5352 -1.2246 20 7 1.4696 2.1641 -1.1453 21 6 1.7097 1.4363 -2.3986 22 6 0.7612 1.9569 -3.4804 23 6 0.8702 1.0714 -4.7233 24 6 -0.6760 1.9260 -2.9565 25 8 1.1159 3.2991 -3.8192 26 1 -0.3634 0.4015 0.9460 27 1 -0.3634 -1.0200 -0.1252 28 1 -0.3634 0.6184 -0.8207 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 0.5366 2.0437 1.4273 32 1 2.1272 1.6742 2.1441 33 1 1.3132 2.7851 4.7804 34 1 2.0015 6.2046 0.9589 35 1 3.3141 5.5665 -0.0601 36 1 1.9126 5.9756 -2.0834 37 1 0.6441 6.6693 -1.0450 38 1 2.2258 7.4749 -1.1768 39 1 3.0791 3.5078 -1.2815 40 1 1.5925 4.0250 -2.1131 41 1 2.7412 1.5892 -2.7156 42 1 1.5318 0.3725 -2.2407 43 1 0.5996 0.0477 -4.4650 44 1 0.1941 1.4421 -5.4939 45 1 1.8941 1.0934 -5.0965 46 1 -0.7536 2.5568 -2.0710 47 1 -1.3517 2.2965 -3.7275 48 1 -0.9465 0.9022 -2.6982 49 1 0.5555 3.6939 -4.5012 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225409066.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:28:49 Heat of formation + Delta-G solvation = -31.129487 kcal Electronic energy + Delta-G solvation = -25598.326548 eV Core-core repulsion = 22367.831079 eV Total energy + Delta-G solvation = -3230.495469 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 284.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.35065 -37.41418 -35.22859 -33.37419 -32.34079 -31.60044 -30.43748 -27.63512 -27.10819 -27.07873 -24.47621 -24.10807 -22.66245 -21.67950 -19.95765 -19.49213 -18.43870 -16.52661 -16.30289 -15.29338 -15.25968 -14.90533 -14.66473 -14.12948 -13.69840 -13.65384 -13.40552 -13.11233 -12.84175 -12.58807 -12.42747 -12.26668 -12.09196 -12.02139 -11.74039 -11.46086 -11.31221 -11.09926 -10.99338 -10.97502 -10.75508 -10.55922 -10.50996 -10.34695 -10.25795 -10.02162 -9.92708 -9.83133 -9.63800 -9.34230 -9.03055 -8.39745 -7.57184 -6.39698 -5.69040 -3.17073 3.40261 3.48406 3.50405 4.31225 4.45973 4.56948 4.93564 5.15176 5.21941 5.38515 5.44518 5.52117 5.57966 5.65773 5.71518 5.73622 5.83792 5.87488 5.89892 5.95987 6.02076 6.05266 6.15313 6.24217 6.27077 6.28497 6.36561 6.44254 6.50978 6.52493 6.58390 6.65961 6.68770 6.77372 6.80172 6.93616 7.02962 7.20711 7.24291 7.43228 7.74209 7.79294 7.87207 7.90891 7.99515 8.59591 9.32904 9.95453 10.59200 11.38799 Molecular weight = 284.22amu Principal moments of inertia in cm(-1) A = 0.019383 B = 0.006171 C = 0.005063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.213234 B = 4536.391625 C = 5529.251378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.058 3.942 4 H 0.028 0.972 5 C 0.193 3.807 6 N -0.591 5.591 7 C -0.249 4.249 8 H 0.064 0.936 9 C 0.008 3.992 10 N -0.900 5.900 11 Si 0.896 3.104 12 H -0.278 1.278 13 H -0.290 1.290 14 H -0.290 1.290 15 C 0.179 3.821 16 H 0.028 0.972 17 C -0.112 4.112 18 C -0.148 4.148 19 C 0.041 3.959 20 N -0.516 5.516 21 C 0.059 3.941 22 C 0.132 3.868 23 C -0.176 4.176 24 C -0.165 4.165 25 O -0.551 6.551 26 H 0.060 0.940 27 H 0.034 0.966 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.251 0.749 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.042 0.958 39 H 0.016 0.984 40 H 0.098 0.902 41 H 0.029 0.971 42 H 0.086 0.914 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.084 0.916 47 H 0.042 0.958 48 H 0.059 0.941 49 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.709 -3.627 -15.127 15.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.051 4.051 4 H 0.046 0.954 5 C 0.067 3.933 6 N -0.314 5.314 7 C -0.379 4.379 8 H 0.081 0.919 9 C -0.192 4.192 10 N -0.544 5.544 11 Si 0.726 3.274 12 H -0.203 1.203 13 H -0.217 1.217 14 H -0.217 1.217 15 C 0.073 3.927 16 H 0.045 0.955 17 C -0.151 4.151 18 C -0.206 4.206 19 C -0.087 4.087 20 N -0.240 5.240 21 C -0.070 4.070 22 C 0.091 3.909 23 C -0.235 4.235 24 C -0.223 4.223 25 O -0.357 6.357 26 H 0.079 0.921 27 H 0.053 0.947 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.034 0.966 40 H 0.116 0.884 41 H 0.048 0.952 42 H 0.104 0.896 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.103 0.897 47 H 0.061 0.939 48 H 0.078 0.922 49 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -2.792 -3.756 -14.401 15.143 hybrid contribution 1.122 0.106 0.255 1.156 sum -1.670 -3.650 -14.147 14.705 Atomic orbital electron populations 1.21807 0.95406 0.99762 1.03608 1.21579 0.97091 0.96212 1.00416 1.22499 0.95663 0.92848 0.94140 0.95435 1.20772 0.97931 0.83499 0.91148 1.44134 1.63538 1.05032 1.18715 1.19118 1.13927 1.19683 0.85172 0.91877 1.25214 0.96478 1.00176 0.97285 1.70014 1.26698 1.40525 1.17178 0.86327 0.80942 0.77958 0.82188 1.20292 1.21739 1.21717 1.20518 0.95726 0.89819 0.86683 0.95466 1.21549 0.99699 0.95922 0.97910 1.21809 1.00549 0.99138 0.99087 1.23006 0.96350 0.88798 1.00585 1.61941 1.58672 1.02473 1.00934 1.22201 0.96322 0.98421 0.90010 1.21250 0.94963 0.81846 0.92796 1.22476 1.02127 1.00650 0.98200 1.22362 0.94736 1.02942 1.02246 1.86641 1.60195 1.28005 1.60899 0.92111 0.94719 0.91059 0.92082 0.93384 0.95043 0.90989 0.93865 0.91110 0.92802 0.92871 0.93332 0.93869 0.96615 0.88400 0.95247 0.89592 0.91808 0.92528 0.92261 0.89722 0.93908 0.92161 0.78861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.22 37.16 0.34 -1.98 16 2 C -0.11 -1.88 5.11 -26.73 -0.14 -2.01 16 3 C 0.06 1.14 2.29 -67.59 -0.16 0.99 16 4 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 5 C 0.19 4.63 4.50 -3.60 -0.02 4.62 16 6 N -0.59 -15.02 2.99 -164.48 -0.49 -15.52 16 7 C -0.25 -6.85 8.39 -15.06 -0.13 -6.98 16 8 H 0.06 1.73 6.51 -52.49 -0.34 1.39 16 9 C 0.01 0.21 4.98 -17.43 -0.09 0.13 16 10 N -0.90 -26.36 11.54 55.49 0.64 -25.72 16 11 Si 0.90 21.98 29.57 -169.99 -5.03 16.95 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 15 C 0.18 3.92 3.12 -67.49 -0.21 3.71 16 16 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 17 C -0.11 -2.25 4.21 -26.73 -0.11 -2.36 16 18 C -0.15 -2.36 9.73 37.16 0.36 -2.00 16 19 C 0.04 0.79 4.24 -3.70 -0.02 0.78 16 20 N -0.52 -9.15 2.38 -226.35 -0.54 -9.68 16 21 C 0.06 0.87 3.71 -3.82 -0.01 0.86 16 22 C 0.13 1.61 1.14 -90.61 -0.10 1.51 16 23 C -0.18 -1.72 8.81 37.16 0.33 -1.39 16 24 C -0.17 -2.00 7.53 37.16 0.28 -1.72 16 25 O -0.55 -6.98 9.98 -35.23 -0.35 -7.33 16 26 H 0.06 1.08 6.77 -51.93 -0.35 0.73 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 1.10 4.55 -51.93 -0.24 0.86 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.69 6.21 -51.93 -0.32 0.37 16 31 H 0.03 0.81 6.44 -51.93 -0.33 0.48 16 32 H 0.07 1.94 6.64 -51.93 -0.34 1.59 16 33 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.07 1.55 7.36 -51.93 -0.38 1.17 16 35 H 0.05 1.11 7.77 -51.93 -0.40 0.70 16 36 H 0.05 0.81 6.62 -51.93 -0.34 0.47 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.10 1.75 3.79 -51.93 -0.20 1.55 16 41 H 0.03 0.47 8.04 -51.93 -0.42 0.05 16 42 H 0.09 1.19 5.24 -51.93 -0.27 0.91 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.08 1.28 7.38 -51.93 -0.38 0.89 16 47 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.70 7.07 -51.93 -0.37 0.34 16 49 H 0.36 3.19 9.05 45.56 0.41 3.61 16 LS Contribution 352.09 15.07 5.31 5.31 Total: -1.00 -29.75 352.09 -8.20 -37.95 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -8.07 Total: 3.91 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 0.33 Total: -5.86 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: -0.39 Total: -50.92 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.35 Total: -7.33 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.75 -8.20 -37.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225409066.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.823 kcal (2) G-P(sol) polarization free energy of solvation -29.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds