Wall clock time and date at job start Fri Apr 10 2020 17:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46870 * 2 1 4 4 H 1.08997 * 109.49016 * 184.13857 * 3 2 1 5 5 C 1.53248 * 109.49018 * 64.09116 * 3 2 1 6 6 N 1.47082 * 108.51395 * 186.23631 * 5 3 2 7 7 C 1.36941 * 120.86153 * 231.18490 * 6 5 3 8 8 H 1.07998 * 120.00121 * 145.15399 * 7 6 5 9 9 C 1.38817 * 119.99630 * 325.16087 * 7 6 5 10 10 N 1.31615 * 119.99873 * 346.94217 * 9 7 6 11 11 Si 1.86804 * 119.99795 * 166.94465 * 9 7 6 12 12 H 1.48499 * 109.46896 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46809 * 120.00119 * 11 9 7 14 14 H 1.48499 * 109.46981 * 239.99979 * 11 9 7 15 15 C 1.47082 * 118.26179 * 51.13678 * 6 5 3 16 16 H 1.09003 * 109.78879 * 68.63590 * 15 6 5 17 17 C 1.53001 * 109.63096 * 189.12117 * 15 6 5 18 18 C 1.52998 * 109.47425 * 184.12009 * 17 15 6 19 19 C 1.53234 * 108.52191 * 308.83333 * 15 6 5 20 20 N 1.46891 * 109.49402 * 304.19532 * 3 2 1 21 21 C 1.46898 * 110.99995 * 307.21102 * 20 3 2 22 22 C 1.53002 * 109.46903 * 162.55392 * 21 20 3 23 23 C 1.53006 * 109.46957 * 187.95782 * 22 21 20 24 24 C 1.53001 * 109.47082 * 307.95454 * 22 21 20 25 25 O 1.42897 * 109.47377 * 67.95686 * 22 21 20 26 26 H 1.09005 * 109.47265 * 292.99850 * 1 2 3 27 27 H 1.09005 * 109.47415 * 173.00235 * 1 2 3 28 28 H 1.09000 * 109.47531 * 52.99995 * 1 2 3 29 29 H 1.08995 * 109.47407 * 120.00066 * 2 1 3 30 30 H 1.08999 * 109.47009 * 240.00345 * 2 1 3 31 31 H 1.08996 * 109.62364 * 305.91231 * 5 3 2 32 32 H 1.08994 * 109.62770 * 66.49897 * 5 3 2 33 33 H 0.97001 * 119.99894 * 180.02562 * 10 9 7 34 34 H 1.09004 * 109.47069 * 304.12480 * 17 15 6 35 35 H 1.09005 * 109.46894 * 64.12023 * 17 15 6 36 36 H 1.09007 * 109.47200 * 302.37261 * 18 17 15 37 37 H 1.09004 * 109.46725 * 62.36770 * 18 17 15 38 38 H 1.08990 * 109.47357 * 182.37043 * 18 17 15 39 39 H 1.09000 * 109.49639 * 293.87078 * 19 15 6 40 40 H 1.08998 * 109.51718 * 173.80092 * 19 15 6 41 41 H 1.08997 * 109.47336 * 282.54973 * 21 20 3 42 42 H 1.09001 * 109.47014 * 42.55488 * 21 20 3 43 43 H 1.08992 * 109.47404 * 59.99551 * 23 22 21 44 44 H 1.09004 * 109.46849 * 179.97438 * 23 22 21 45 45 H 1.09001 * 109.46779 * 299.99690 * 23 22 21 46 46 H 1.09000 * 109.47093 * 60.00132 * 24 22 21 47 47 H 1.09003 * 109.46768 * 180.02562 * 24 22 21 48 48 H 1.09005 * 109.46925 * 300.00040 * 24 22 21 49 49 H 0.96700 * 114.00322 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1274 1.4438 -0.0742 5 6 1.6152 2.1350 1.2995 6 7 1.9834 3.5563 1.2132 7 6 2.6993 4.1585 2.2133 8 1 3.4211 4.9254 1.9743 9 6 2.4972 3.7829 3.5344 10 7 1.4547 3.0472 3.8572 11 14 3.7049 4.3217 4.8537 12 1 4.7824 5.1355 4.2358 13 1 2.9940 5.1345 5.8732 14 1 4.2977 3.1239 5.5010 15 6 1.5637 4.3136 0.0242 16 1 0.4804 4.4347 0.0273 17 6 2.2345 5.6887 0.0273 18 6 1.7171 6.5113 -1.1544 19 6 1.9910 3.5352 -1.2246 20 7 1.4696 2.1641 -1.1453 21 6 1.7097 1.4363 -2.3986 22 6 0.7612 1.9569 -3.4804 23 6 0.8702 1.0714 -4.7233 24 6 -0.6760 1.9260 -2.9565 25 8 1.1159 3.2991 -3.8192 26 1 -0.3634 0.4015 0.9460 27 1 -0.3634 -1.0200 -0.1252 28 1 -0.3634 0.6184 -0.8207 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 0.5366 2.0437 1.4273 32 1 2.1272 1.6742 2.1441 33 1 1.3132 2.7851 4.7804 34 1 2.0015 6.2046 0.9589 35 1 3.3141 5.5665 -0.0601 36 1 1.9126 5.9756 -2.0834 37 1 0.6441 6.6693 -1.0450 38 1 2.2258 7.4749 -1.1768 39 1 3.0791 3.5078 -1.2815 40 1 1.5925 4.0250 -2.1131 41 1 2.7412 1.5892 -2.7156 42 1 1.5318 0.3725 -2.2407 43 1 0.5996 0.0477 -4.4650 44 1 0.1941 1.4421 -5.4939 45 1 1.8941 1.0934 -5.0965 46 1 -0.7536 2.5568 -2.0710 47 1 -1.3517 2.2965 -3.7275 48 1 -0.9465 0.9022 -2.6982 49 1 0.5555 3.6939 -4.5012 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225409066.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:28:49 Heat of formation + Delta-G solvation = -50.338847 kcal Electronic energy + Delta-G solvation = -25599.159528 eV Core-core repulsion = 22367.831079 eV Total energy + Delta-G solvation = -3231.328450 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 284.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.76580 -38.68976 -36.81077 -35.16758 -33.67331 -32.87406 -32.28495 -29.13648 -28.69680 -28.04273 -26.17542 -25.61970 -24.25001 -23.32048 -21.24769 -21.03410 -20.07642 -18.30035 -17.48748 -17.05744 -16.55832 -16.31949 -16.18158 -15.85969 -15.32824 -15.16535 -14.64342 -14.43865 -14.29102 -14.15270 -13.81960 -13.70973 -13.31699 -13.14502 -13.09443 -12.84971 -12.78411 -12.50305 -12.44107 -12.39795 -12.37411 -12.23875 -12.12116 -11.91918 -11.73157 -11.59901 -11.55833 -11.32885 -11.12175 -10.89950 -10.55681 -10.50205 -9.09046 -8.48362 -7.82908 -5.35163 1.42332 1.43877 1.54343 2.50117 3.03739 3.30561 3.42694 3.66105 3.95070 4.08745 4.17341 4.17714 4.24597 4.32826 4.38993 4.48365 4.49383 4.60498 4.65707 4.72329 4.78918 4.81644 4.84766 4.92372 4.98372 5.02010 5.04754 5.08703 5.12669 5.20704 5.21265 5.26929 5.30169 5.33219 5.40089 5.47165 5.55316 5.61425 5.62093 5.70584 5.71236 5.77923 6.34289 6.42292 6.47697 7.07731 7.19960 7.90236 8.48677 9.22309 Molecular weight = 284.22amu Principal moments of inertia in cm(-1) A = 0.019383 B = 0.006171 C = 0.005063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.213234 B = 4536.391625 C = 5529.251378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.109 4.109 3 C 0.068 3.932 4 H 0.007 0.993 5 C 0.204 3.796 6 N -0.610 5.610 7 C -0.255 4.255 8 H 0.062 0.938 9 C -0.045 4.045 10 N -0.933 5.933 11 Si 0.960 3.040 12 H -0.268 1.268 13 H -0.290 1.290 14 H -0.290 1.290 15 C 0.174 3.826 16 H 0.009 0.991 17 C -0.107 4.107 18 C -0.135 4.135 19 C 0.058 3.942 20 N -0.513 5.513 21 C 0.057 3.943 22 C 0.136 3.864 23 C -0.168 4.168 24 C -0.160 4.160 25 O -0.571 6.571 26 H 0.029 0.971 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.007 0.993 32 H 0.035 0.965 33 H 0.248 0.752 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.063 0.937 39 H -0.005 1.005 40 H 0.119 0.881 41 H 0.019 0.981 42 H 0.101 0.899 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.056 0.944 46 H 0.050 0.950 47 H 0.065 0.935 48 H 0.065 0.935 49 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.846 -4.023 -17.893 18.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.147 4.147 3 C -0.042 4.042 4 H 0.025 0.975 5 C 0.078 3.922 6 N -0.334 5.334 7 C -0.385 4.385 8 H 0.079 0.921 9 C -0.241 4.241 10 N -0.578 5.578 11 Si 0.788 3.212 12 H -0.193 1.193 13 H -0.217 1.217 14 H -0.217 1.217 15 C 0.069 3.931 16 H 0.026 0.974 17 C -0.145 4.145 18 C -0.193 4.193 19 C -0.071 4.071 20 N -0.237 5.237 21 C -0.071 4.071 22 C 0.095 3.905 23 C -0.226 4.226 24 C -0.218 4.218 25 O -0.380 6.380 26 H 0.048 0.952 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.025 0.975 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.014 0.986 40 H 0.137 0.863 41 H 0.037 0.963 42 H 0.119 0.881 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.084 0.916 48 H 0.084 0.916 49 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -2.932 -4.142 -17.211 17.944 hybrid contribution 1.130 0.258 1.070 1.577 sum -1.802 -3.883 -16.141 16.699 Atomic orbital electron populations 1.21731 0.94567 1.01469 1.02037 1.21548 0.97694 0.93792 1.01652 1.22217 0.94435 0.94704 0.92851 0.97534 1.20491 0.95797 0.83413 0.92455 1.44460 1.63563 1.05968 1.19405 1.19368 1.13837 1.19317 0.85990 0.92084 1.25930 0.98139 1.00770 0.99251 1.70168 1.28431 1.41996 1.17226 0.85323 0.79002 0.77433 0.79429 1.19291 1.21723 1.21725 1.20689 0.94720 0.91126 0.86611 0.97362 1.21460 0.99026 0.95275 0.98741 1.21697 1.00878 0.99409 0.97292 1.22808 0.94965 0.89671 0.99660 1.61923 1.57971 1.01969 1.01867 1.22370 0.96700 0.99032 0.89008 1.21183 0.93892 0.82335 0.93070 1.22385 1.02589 1.00558 0.97090 1.22287 0.95255 1.02694 1.01523 1.86529 1.61117 1.28364 1.61970 0.95199 0.91692 0.90707 0.92639 0.90275 0.97496 0.94658 0.94289 0.93719 0.93751 0.91706 0.92810 0.91767 0.98642 0.86310 0.96277 0.88121 0.90814 0.90501 0.92537 0.93081 0.91581 0.91560 0.76577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 9.22 71.98 0.66 -3.61 16 2 C -0.11 -3.49 5.11 30.59 0.16 -3.33 16 3 C 0.07 2.73 2.29 45.00 0.10 2.84 16 4 H 0.01 0.29 8.14 -2.39 -0.02 0.28 16 5 C 0.20 10.39 4.50 86.35 0.39 10.78 16 6 N -0.61 -32.51 2.99 -674.28 -2.02 -34.52 16 7 C -0.25 -14.58 8.39 84.03 0.70 -13.87 16 8 H 0.06 3.46 6.51 -2.91 -0.02 3.44 16 9 C -0.05 -2.61 4.98 84.86 0.42 -2.19 16 10 N -0.93 -57.12 11.54 21.65 0.25 -56.87 16 11 Si 0.96 46.56 29.57 68.60 2.03 48.58 16 12 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 13 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 14 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 15 C 0.17 7.86 3.12 44.96 0.14 8.00 16 16 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 17 C -0.11 -4.33 4.21 30.59 0.13 -4.20 16 18 C -0.14 -4.11 9.73 71.98 0.70 -3.41 16 19 C 0.06 2.22 4.24 86.38 0.37 2.59 16 20 N -0.51 -18.09 2.38 -870.03 -2.07 -20.16 16 21 C 0.06 1.56 3.71 86.30 0.32 1.88 16 22 C 0.14 2.91 1.14 -10.79 -0.01 2.90 16 23 C -0.17 -2.58 8.81 71.98 0.63 -1.95 16 24 C -0.16 -3.43 7.53 71.98 0.54 -2.89 16 25 O -0.57 -12.76 9.98 -148.98 -1.49 -14.24 16 26 H 0.03 1.07 6.77 -2.38 -0.02 1.06 16 27 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 28 H 0.07 2.20 4.55 -2.39 -0.01 2.19 16 29 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.08 2.07 6.21 -2.39 -0.01 2.06 16 31 H 0.01 0.39 6.44 -2.39 -0.02 0.37 16 32 H 0.03 2.02 6.64 -2.39 -0.02 2.00 16 33 H 0.25 14.68 8.31 -92.71 -0.77 13.90 16 34 H 0.04 2.01 7.36 -2.38 -0.02 2.00 16 35 H 0.04 1.85 7.77 -2.38 -0.02 1.84 16 36 H 0.06 1.83 6.62 -2.38 -0.02 1.81 16 37 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 40 H 0.12 4.09 3.79 -2.39 -0.01 4.08 16 41 H 0.02 0.58 8.04 -2.39 -0.02 0.56 16 42 H 0.10 2.47 5.24 -2.39 -0.01 2.45 16 43 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.05 1.46 7.38 -2.39 -0.02 1.44 16 47 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.07 1.33 7.07 -2.38 -0.02 1.32 16 49 H 0.38 5.33 9.05 -74.06 -0.67 4.66 16 Total: -1.00 -68.13 352.09 2.21 -65.92 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.25 Total: 17.78 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 5.26 Total: -6.48 kcal Atomic # 7 Polarization: -107.72 SS G_CDS: -3.84 Total: -111.56 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -1.49 Total: -14.24 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.58 kcal Total: -68.13 2.21 -65.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225409066.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.579 kcal (2) G-P(sol) polarization free energy of solvation -68.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds