Wall clock time and date at job start Fri Apr 10 2020 17:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47482 * 2 1 4 4 C 1.46499 * 119.99658 * 90.00117 * 3 2 1 5 5 C 1.50701 * 109.46992 * 90.00121 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47094 * 90.00289 * 9 7 5 11 11 H 1.48505 * 109.47195 * 210.00171 * 9 7 5 12 12 H 1.48493 * 109.47449 * 330.00136 * 9 7 5 13 13 C 1.34775 * 120.00005 * 270.00252 * 3 2 1 14 14 O 1.21285 * 119.99996 * 179.97438 * 13 3 2 15 15 C 1.50698 * 120.00318 * 0.02562 * 13 3 2 16 16 N 1.46895 * 109.47428 * 180.02562 * 15 13 3 17 17 C 1.48565 * 110.99602 * 285.41319 * 16 15 13 18 18 C 1.54385 * 104.59427 * 200.95662 * 17 16 15 19 19 C 1.54259 * 105.05917 * 23.85590 * 18 17 16 20 20 H 1.08998 * 110.41180 * 241.05562 * 19 18 17 21 21 C 1.52998 * 110.32488 * 118.89326 * 19 18 17 22 22 C 1.48565 * 111.00298 * 169.99799 * 16 15 13 23 23 H 1.08997 * 110.40665 * 40.25819 * 22 16 15 24 24 C 1.52997 * 110.41009 * 277.81622 * 22 16 15 25 25 O 1.42903 * 109.46738 * 66.45248 * 24 22 16 26 26 H 1.08993 * 109.47491 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46883 * 300.00131 * 1 2 3 28 28 H 1.09005 * 109.47362 * 59.99236 * 1 2 3 29 29 H 1.08998 * 109.46784 * 240.00274 * 2 1 3 30 30 H 1.08994 * 109.46982 * 120.00586 * 2 1 3 31 31 H 1.09002 * 109.47391 * 330.00112 * 4 3 2 32 32 H 1.09001 * 109.46813 * 210.00168 * 4 3 2 33 33 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 34 34 H 1.09006 * 109.47054 * 299.99977 * 15 13 3 35 35 H 1.09003 * 109.47164 * 59.99309 * 15 13 3 36 36 H 1.08993 * 110.41249 * 319.74048 * 17 16 15 37 37 H 1.09008 * 110.40806 * 82.18383 * 17 16 15 38 38 H 1.08999 * 110.32328 * 264.96321 * 18 17 16 39 39 H 1.08999 * 110.40645 * 142.79785 * 18 17 16 40 40 H 1.09002 * 109.47059 * 304.36712 * 21 19 18 41 41 H 1.09002 * 109.47210 * 64.35998 * 21 19 18 42 42 H 1.08996 * 109.47353 * 184.36255 * 21 19 18 43 43 H 1.08999 * 109.46911 * 186.45223 * 24 22 16 44 44 H 1.09000 * 109.46975 * 306.45274 * 24 22 16 45 45 H 0.96706 * 113.99598 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.6859 1.8348 1.7037 6 1 4.3430 1.2307 1.0957 7 6 4.1496 2.3902 2.8775 8 7 3.3496 3.1262 3.6176 9 14 5.9140 2.0971 3.4162 10 1 6.7852 3.1625 2.8587 11 1 5.9893 2.1216 4.8992 12 1 6.3701 0.7742 2.9193 13 6 2.2430 2.0165 -1.1672 14 8 2.6469 3.1602 -1.1672 15 6 1.9912 1.3064 -2.4723 16 7 2.3101 2.2062 -3.5888 17 6 1.2590 3.2431 -3.7538 18 6 1.4224 3.7346 -5.2082 19 6 2.1110 2.5704 -5.9498 20 1 3.0754 2.8891 -6.3454 21 6 1.2170 2.0577 -7.0806 22 6 2.3059 1.4733 -4.8812 23 1 1.4807 0.7618 -4.9119 24 6 3.6400 0.7546 -5.0914 25 8 3.7824 -0.2801 -4.1161 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5140 -0.8899 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.5818 1.6876 2.0284 32 1 2.0957 3.1410 1.1384 33 1 3.6757 3.5166 4.4436 34 1 2.6211 0.4186 -2.5303 35 1 0.9431 1.0126 -2.5298 36 1 0.2702 2.8085 -3.6082 37 1 1.4215 4.0636 -3.0548 38 1 2.0489 4.6260 -5.2384 39 1 0.4482 3.9421 -5.6509 40 1 0.2441 1.7783 -6.6763 41 1 1.0887 2.8422 -7.8264 42 1 1.6812 1.1876 -7.5447 43 1 3.6644 0.3185 -6.0900 44 1 4.4575 1.4679 -4.9863 45 1 4.6075 -0.7792 -4.1898 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248993506.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:29:03 Heat of formation + Delta-G solvation = -83.123478 kcal Electronic energy + Delta-G solvation = -23934.770575 eV Core-core repulsion = 20566.187382 eV Total energy + Delta-G solvation = -3368.583193 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.81650 -38.38483 -36.35142 -35.09274 -33.36850 -32.62960 -30.33323 -29.98639 -28.73827 -27.00937 -25.08192 -23.80215 -22.90867 -22.32075 -20.69407 -20.12916 -18.09945 -17.19555 -16.41964 -16.16708 -16.04914 -15.66160 -15.14058 -14.64704 -14.47422 -14.00330 -13.64891 -13.48059 -13.24839 -13.23063 -12.97101 -12.69389 -12.37921 -12.17756 -11.95125 -11.83584 -11.53910 -11.32959 -11.11108 -11.02011 -10.95139 -10.82069 -10.76840 -10.60678 -10.47541 -10.42187 -10.03551 -9.96778 -9.52417 -8.72971 -8.35301 -8.16112 -7.49901 -5.95984 -3.99816 3.36742 3.42404 3.44741 3.64082 3.79865 4.05805 4.29771 4.51093 4.58885 4.81403 4.86321 5.17697 5.19527 5.21976 5.29688 5.35200 5.38836 5.41558 5.43345 5.50982 5.57584 5.61255 5.75573 5.79262 5.84268 5.88857 5.91523 6.02025 6.07155 6.15640 6.21508 6.31339 6.34278 6.56428 7.02880 7.07057 7.27625 7.55583 7.61204 7.70586 8.02058 8.34393 8.60170 9.01545 9.31344 9.65292 11.12051 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.020084 B = 0.004391 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.785422 B = 6375.059400 C = 6540.903511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.601 5.601 4 C 0.248 3.752 5 C -0.521 4.521 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.897 5.897 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.509 3.491 14 O -0.528 6.528 15 C 0.024 3.976 16 N -0.479 5.479 17 C 0.033 3.967 18 C -0.118 4.118 19 C -0.090 4.090 20 H 0.081 0.919 21 C -0.143 4.143 22 C 0.064 3.936 23 H 0.056 0.944 24 C 0.091 3.909 25 O -0.570 6.570 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.030 0.970 32 H 0.041 0.959 33 H 0.262 0.738 34 H 0.118 0.882 35 H 0.051 0.949 36 H 0.036 0.964 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.045 0.955 44 H 0.056 0.944 45 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.275 -6.896 -19.721 21.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.017 4.017 3 N -0.335 5.335 4 C 0.129 3.871 5 C -0.560 4.560 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.536 5.536 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.200 1.200 13 C 0.295 3.705 14 O -0.404 6.404 15 C -0.107 4.107 16 N -0.203 5.203 17 C -0.095 4.095 18 C -0.156 4.156 19 C -0.109 4.109 20 H 0.099 0.901 21 C -0.201 4.201 22 C -0.044 4.044 23 H 0.074 0.926 24 C 0.013 3.987 25 O -0.376 6.376 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.136 0.864 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -5.126 -5.715 -19.204 20.682 hybrid contribution 0.689 -0.839 0.147 1.095 sum -4.437 -6.554 -19.057 20.636 Atomic orbital electron populations 1.22218 0.97120 1.01218 1.02073 1.21378 0.93235 0.84502 1.02607 1.48230 1.64388 1.13181 1.07666 1.19209 0.96104 0.93549 0.78246 1.21472 0.96999 1.31540 1.06032 0.92487 1.24931 0.97753 0.95037 0.96447 1.69938 1.35571 1.33732 1.14398 0.86512 0.84963 0.78611 0.77403 1.20605 1.21247 1.19956 1.20174 0.78596 0.87016 0.84724 1.90637 1.44833 1.17948 1.86975 1.22398 1.00377 0.97229 0.90669 1.65053 1.43921 1.10600 1.00763 1.23178 0.92499 0.96751 0.97044 1.22379 1.00409 0.98065 0.94775 1.21813 0.99815 0.94746 0.94536 0.90067 1.21878 0.99437 1.00968 0.97808 1.22741 0.96449 0.94644 0.90606 0.92558 1.22158 0.97273 0.89147 0.90139 1.86431 1.44668 1.49888 1.56566 0.92296 0.92109 0.93385 0.91732 0.90110 0.95235 0.94081 0.92854 0.86381 0.93148 0.94542 0.88695 0.90828 0.91348 0.92626 0.92280 0.92634 0.93700 0.92591 0.77519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 10.24 37.16 0.38 -2.05 16 2 C 0.11 1.86 5.93 -4.04 -0.02 1.83 16 3 N -0.60 -13.46 2.46 -175.06 -0.43 -13.89 16 4 C 0.25 6.75 5.16 -5.19 -0.03 6.72 16 5 C -0.52 -15.33 9.39 -34.44 -0.32 -15.65 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 9 Si 0.90 22.50 29.54 -169.99 -5.02 17.48 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.51 11.39 7.52 -10.99 -0.08 11.31 16 14 O -0.53 -14.06 14.80 5.55 0.08 -13.97 16 15 C 0.02 0.42 3.79 -4.98 -0.02 0.40 16 16 N -0.48 -7.78 4.66 -223.56 -1.04 -8.82 16 17 C 0.03 0.49 5.92 -2.18 -0.01 0.48 16 18 C -0.12 -1.34 6.65 -25.35 -0.17 -1.51 16 19 C -0.09 -0.92 3.21 -89.24 -0.29 -1.20 16 20 H 0.08 0.79 7.86 -51.93 -0.41 0.39 16 21 C -0.14 -1.12 8.90 37.16 0.33 -0.79 16 22 C 0.06 0.80 2.23 -66.07 -0.15 0.65 16 23 H 0.06 0.69 7.72 -51.93 -0.40 0.29 16 24 C 0.09 1.01 6.61 37.16 0.25 1.26 16 25 O -0.57 -6.81 11.24 -35.23 -0.40 -7.21 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.05 0.67 7.22 -51.93 -0.37 0.30 16 29 H 0.06 0.98 6.44 -51.93 -0.33 0.65 16 30 H 0.08 1.44 8.07 -51.93 -0.42 1.02 16 31 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 32 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.12 2.02 4.90 -51.93 -0.25 1.76 16 35 H 0.05 0.79 6.81 -51.93 -0.35 0.43 16 36 H 0.04 0.51 7.75 -51.93 -0.40 0.11 16 37 H 0.09 1.69 7.23 -51.92 -0.38 1.31 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.65 7.71 -51.93 -0.40 0.25 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.38 2.90 9.12 45.56 0.42 3.31 16 LS Contribution 355.87 15.07 5.36 5.36 Total: -1.00 -35.20 355.87 -7.98 -43.17 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -7.04 Total: 1.38 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -0.23 Total: 3.11 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: -0.74 Total: -49.32 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.31 Total: -21.18 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.20 -7.98 -43.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248993506.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.949 kcal (2) G-P(sol) polarization free energy of solvation -35.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds