Wall clock time and date at job start Fri Apr 10 2020 17:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47482 * 2 1 4 4 C 1.46499 * 119.99658 * 90.00117 * 3 2 1 5 5 C 1.50701 * 109.46992 * 90.00121 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47094 * 90.00289 * 9 7 5 11 11 H 1.48505 * 109.47195 * 210.00171 * 9 7 5 12 12 H 1.48493 * 109.47449 * 330.00136 * 9 7 5 13 13 C 1.34775 * 120.00005 * 270.00252 * 3 2 1 14 14 O 1.21285 * 119.99996 * 179.97438 * 13 3 2 15 15 C 1.50698 * 120.00318 * 0.02562 * 13 3 2 16 16 N 1.46895 * 109.47428 * 180.02562 * 15 13 3 17 17 C 1.48565 * 110.99602 * 285.41319 * 16 15 13 18 18 C 1.54385 * 104.59427 * 200.95662 * 17 16 15 19 19 C 1.54259 * 105.05917 * 23.85590 * 18 17 16 20 20 H 1.08998 * 110.41180 * 241.05562 * 19 18 17 21 21 C 1.52998 * 110.32488 * 118.89326 * 19 18 17 22 22 C 1.48565 * 111.00298 * 169.99799 * 16 15 13 23 23 H 1.08997 * 110.40665 * 40.25819 * 22 16 15 24 24 C 1.52997 * 110.41009 * 277.81622 * 22 16 15 25 25 O 1.42903 * 109.46738 * 66.45248 * 24 22 16 26 26 H 1.08993 * 109.47491 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46883 * 300.00131 * 1 2 3 28 28 H 1.09005 * 109.47362 * 59.99236 * 1 2 3 29 29 H 1.08998 * 109.46784 * 240.00274 * 2 1 3 30 30 H 1.08994 * 109.46982 * 120.00586 * 2 1 3 31 31 H 1.09002 * 109.47391 * 330.00112 * 4 3 2 32 32 H 1.09001 * 109.46813 * 210.00168 * 4 3 2 33 33 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 34 34 H 1.09006 * 109.47054 * 299.99977 * 15 13 3 35 35 H 1.09003 * 109.47164 * 59.99309 * 15 13 3 36 36 H 1.08993 * 110.41249 * 319.74048 * 17 16 15 37 37 H 1.09008 * 110.40806 * 82.18383 * 17 16 15 38 38 H 1.08999 * 110.32328 * 264.96321 * 18 17 16 39 39 H 1.08999 * 110.40645 * 142.79785 * 18 17 16 40 40 H 1.09002 * 109.47059 * 304.36712 * 21 19 18 41 41 H 1.09002 * 109.47210 * 64.35998 * 21 19 18 42 42 H 1.08996 * 109.47353 * 184.36255 * 21 19 18 43 43 H 1.08999 * 109.46911 * 186.45223 * 24 22 16 44 44 H 1.09000 * 109.46975 * 306.45274 * 24 22 16 45 45 H 0.96706 * 113.99598 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.6859 1.8348 1.7037 6 1 4.3430 1.2307 1.0957 7 6 4.1496 2.3902 2.8775 8 7 3.3496 3.1262 3.6176 9 14 5.9140 2.0971 3.4162 10 1 6.7852 3.1625 2.8587 11 1 5.9893 2.1216 4.8992 12 1 6.3701 0.7742 2.9193 13 6 2.2430 2.0165 -1.1672 14 8 2.6469 3.1602 -1.1672 15 6 1.9912 1.3064 -2.4723 16 7 2.3101 2.2062 -3.5888 17 6 1.2590 3.2431 -3.7538 18 6 1.4224 3.7346 -5.2082 19 6 2.1110 2.5704 -5.9498 20 1 3.0754 2.8891 -6.3454 21 6 1.2170 2.0577 -7.0806 22 6 2.3059 1.4733 -4.8812 23 1 1.4807 0.7618 -4.9119 24 6 3.6400 0.7546 -5.0914 25 8 3.7824 -0.2801 -4.1161 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5140 -0.8899 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.5818 1.6876 2.0284 32 1 2.0957 3.1410 1.1384 33 1 3.6757 3.5166 4.4436 34 1 2.6211 0.4186 -2.5303 35 1 0.9431 1.0126 -2.5298 36 1 0.2702 2.8085 -3.6082 37 1 1.4215 4.0636 -3.0548 38 1 2.0489 4.6260 -5.2384 39 1 0.4482 3.9421 -5.6509 40 1 0.2441 1.7783 -6.6763 41 1 1.0887 2.8422 -7.8264 42 1 1.6812 1.1876 -7.5447 43 1 3.6644 0.3185 -6.0900 44 1 4.4575 1.4679 -4.9863 45 1 4.6075 -0.7792 -4.1898 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000248993506.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:29:02 Heat of formation + Delta-G solvation = -110.086847 kcal Electronic energy + Delta-G solvation = -23935.939794 eV Core-core repulsion = 20566.187382 eV Total energy + Delta-G solvation = -3369.752412 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.12519 -39.85552 -37.24748 -36.85565 -34.98650 -34.29688 -31.63248 -31.31294 -30.04779 -28.63554 -26.51750 -24.70795 -24.65315 -23.93417 -21.83352 -21.04627 -19.77362 -18.60257 -18.04670 -17.82892 -17.27305 -17.04101 -16.51134 -16.24301 -15.91634 -15.52398 -14.82458 -14.62079 -14.56146 -14.36713 -14.20743 -13.91094 -13.80093 -13.56663 -13.27007 -13.17972 -13.09861 -12.83008 -12.68107 -12.50776 -12.46136 -12.15666 -12.08385 -11.84713 -11.78038 -11.69505 -11.61642 -11.39377 -10.84476 -10.64950 -10.44783 -9.46945 -9.33537 -8.21915 -6.36849 1.35260 1.39167 1.48829 1.90070 2.25754 2.41686 3.04998 3.07346 3.24264 3.61407 3.78842 3.94717 4.02078 4.10594 4.22081 4.24692 4.35330 4.42844 4.49321 4.51661 4.55028 4.61063 4.64520 4.81131 4.85639 4.90610 4.96004 4.96191 5.03593 5.04161 5.14437 5.20853 5.22574 5.29172 5.34947 5.44308 5.58869 5.85787 5.93356 6.02622 6.08289 6.71308 6.84893 6.95565 7.29433 7.56873 8.85142 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.020084 B = 0.004391 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.785422 B = 6375.059400 C = 6540.903511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.101 3.899 3 N -0.607 5.607 4 C 0.265 3.735 5 C -0.542 4.542 6 H 0.051 0.949 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.969 3.031 10 H -0.281 1.281 11 H -0.272 1.272 12 H -0.261 1.261 13 C 0.498 3.502 14 O -0.583 6.583 15 C 0.045 3.955 16 N -0.509 5.509 17 C 0.031 3.969 18 C -0.112 4.112 19 C -0.084 4.084 20 H 0.086 0.914 21 C -0.137 4.137 22 C 0.063 3.937 23 H 0.064 0.936 24 C 0.091 3.909 25 O -0.590 6.590 26 H 0.097 0.903 27 H 0.040 0.960 28 H 0.054 0.946 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.021 0.979 32 H -0.007 1.007 33 H 0.267 0.733 34 H 0.126 0.874 35 H 0.073 0.927 36 H 0.044 0.956 37 H 0.052 0.948 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.041 0.959 45 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.107 -9.168 -21.933 24.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.021 4.021 3 N -0.339 5.339 4 C 0.143 3.857 5 C -0.580 4.580 6 H 0.069 0.931 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.793 3.207 10 H -0.207 1.207 11 H -0.197 1.197 12 H -0.185 1.185 13 C 0.287 3.713 14 O -0.463 6.463 15 C -0.086 4.086 16 N -0.233 5.233 17 C -0.097 4.097 18 C -0.150 4.150 19 C -0.103 4.103 20 H 0.104 0.896 21 C -0.195 4.195 22 C -0.045 4.045 23 H 0.081 0.919 24 C 0.013 3.987 25 O -0.399 6.399 26 H 0.115 0.885 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.111 0.889 30 H 0.091 0.909 31 H 0.039 0.961 32 H 0.011 0.989 33 H 0.076 0.924 34 H 0.144 0.856 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.074 0.926 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.060 0.940 45 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -4.974 -8.044 -21.439 23.433 hybrid contribution 0.616 -0.117 0.847 1.053 sum -4.358 -8.161 -20.593 22.576 Atomic orbital electron populations 1.22136 0.94618 1.03490 1.01419 1.21696 0.95261 0.81562 1.03625 1.48280 1.64376 1.15045 1.06190 1.18656 0.95291 0.91306 0.80406 1.21709 0.97859 1.31963 1.06484 0.93110 1.25877 1.02519 0.94435 0.96356 1.70058 1.37758 1.34273 1.14837 0.85401 0.78902 0.78844 0.77572 1.20725 1.19723 1.18537 1.21209 0.77239 0.86606 0.86270 1.90603 1.47263 1.20506 1.87890 1.22197 1.01684 0.96591 0.88124 1.64989 1.44701 1.11421 1.02197 1.23113 0.92598 0.95548 0.98468 1.22368 1.01761 0.98315 0.92599 1.21825 1.00540 0.93368 0.94539 0.89610 1.21841 0.98827 1.01825 0.96963 1.22921 0.97502 0.95156 0.88940 0.91851 1.22207 0.95965 0.88913 0.91612 1.86353 1.46110 1.50199 1.57240 0.88461 0.94084 0.92740 0.88877 0.90860 0.96097 0.98898 0.92414 0.85602 0.90955 0.93767 0.92935 0.91541 0.89095 0.92588 0.91025 0.91326 0.90298 0.94047 0.75525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.33 10.24 71.98 0.74 -3.59 16 2 C 0.10 3.41 5.93 86.38 0.51 3.93 16 3 N -0.61 -27.96 2.46 -826.16 -2.03 -29.99 16 4 C 0.26 15.19 5.16 85.63 0.44 15.63 16 5 C -0.54 -32.88 9.39 25.60 0.24 -32.64 16 6 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 7 C 0.01 0.41 5.46 84.66 0.46 0.87 16 8 N -0.93 -58.20 13.29 21.45 0.28 -57.91 16 9 Si 0.97 46.58 29.54 68.60 2.03 48.61 16 10 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 13 C 0.50 23.04 7.52 87.66 0.66 23.70 16 14 O -0.58 -32.97 14.80 -3.05 -0.05 -33.02 16 15 C 0.05 1.53 3.79 85.56 0.32 1.85 16 16 N -0.51 -16.33 4.66 -861.21 -4.01 -20.35 16 17 C 0.03 0.93 5.92 86.45 0.51 1.44 16 18 C -0.11 -2.42 6.65 31.49 0.21 -2.22 16 19 C -0.08 -1.49 3.21 -9.90 -0.03 -1.53 16 20 H 0.09 1.47 7.86 -2.39 -0.02 1.45 16 21 C -0.14 -1.63 8.90 71.98 0.64 -0.99 16 22 C 0.06 1.41 2.23 45.06 0.10 1.51 16 23 H 0.06 1.35 7.72 -2.39 -0.02 1.33 16 24 C 0.09 1.80 6.61 71.98 0.48 2.27 16 25 O -0.59 -12.71 11.24 -148.98 -1.67 -14.39 16 26 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.04 1.27 8.14 -2.38 -0.02 1.26 16 28 H 0.05 1.42 7.22 -2.38 -0.02 1.40 16 29 H 0.09 2.62 6.44 -2.39 -0.02 2.61 16 30 H 0.07 2.58 8.07 -2.39 -0.02 2.56 16 31 H 0.02 1.21 8.07 -2.39 -0.02 1.20 16 32 H -0.01 -0.47 7.42 -2.39 -0.02 -0.49 16 33 H 0.27 15.61 8.31 -92.71 -0.77 14.83 16 34 H 0.13 4.09 4.90 -2.38 -0.01 4.08 16 35 H 0.07 2.12 6.81 -2.39 -0.02 2.10 16 36 H 0.04 1.23 7.75 -2.39 -0.02 1.21 16 37 H 0.05 2.01 7.23 -2.38 -0.02 1.99 16 38 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.09 1.54 7.71 -2.39 -0.02 1.52 16 40 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.39 5.16 9.12 -74.05 -0.68 4.49 16 Total: -1.00 -80.72 355.87 0.12 -80.60 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.29 Total: 16.21 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: 5.28 Total: 10.24 kcal Atomic # 7 Polarization: -102.50 SS G_CDS: -5.76 Total: -108.25 kcal Atomic # 8 Polarization: -45.69 SS G_CDS: -1.72 Total: -47.40 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -80.72 0.12 -80.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248993506.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.489 kcal (2) G-P(sol) polarization free energy of solvation -80.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds