Wall clock time and date at job start Fri Apr 10 2020 17:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46496 * 109.46982 * 2 1 4 4 C 1.46509 * 120.00086 * 270.00244 * 3 2 1 5 5 C 1.50703 * 109.46901 * 270.00152 * 4 3 2 6 6 H 1.07994 * 120.00053 * 359.97438 * 5 4 3 7 7 C 1.37872 * 119.99952 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99753 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00153 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47117 * 90.00001 * 9 7 5 11 11 H 1.48497 * 109.47086 * 209.99951 * 9 7 5 12 12 H 1.48492 * 109.46986 * 329.99752 * 9 7 5 13 13 C 1.34775 * 120.00310 * 90.00298 * 3 2 1 14 14 O 1.21280 * 120.00270 * 179.97438 * 13 3 2 15 15 C 1.50704 * 119.99516 * 359.97438 * 13 3 2 16 16 N 1.46900 * 109.46935 * 179.97438 * 15 13 3 17 17 C 1.48529 * 111.00554 * 287.39860 * 16 15 13 18 18 C 1.54934 * 103.22912 * 200.27949 * 17 16 15 19 19 C 1.54597 * 102.92105 * 37.41269 * 18 17 16 20 20 H 1.09004 * 110.30592 * 97.05953 * 19 18 17 21 21 C 1.52998 * 110.30546 * 219.12696 * 19 18 17 22 22 C 1.47907 * 110.99845 * 170.00023 * 16 15 13 23 23 H 1.08996 * 109.91720 * 26.48982 * 22 16 15 24 24 C 1.52996 * 109.91478 * 265.19933 * 22 16 15 25 25 O 1.42902 * 109.47528 * 67.41369 * 24 22 16 26 26 H 1.09002 * 109.47142 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46916 * 299.99835 * 1 2 3 28 28 H 1.09003 * 109.47179 * 59.99850 * 1 2 3 29 29 H 1.09005 * 109.46916 * 240.00165 * 2 1 3 30 30 H 1.09003 * 109.47179 * 120.00150 * 2 1 3 31 31 H 1.08998 * 109.46899 * 30.00207 * 4 3 2 32 32 H 1.08999 * 109.46869 * 150.00206 * 4 3 2 33 33 H 0.97004 * 119.99668 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.47350 * 60.00119 * 15 13 3 35 35 H 1.08997 * 109.47297 * 299.99965 * 15 13 3 36 36 H 1.09002 * 110.67056 * 81.84058 * 17 16 15 37 37 H 1.08999 * 110.66437 * 318.71748 * 17 16 15 38 38 H 1.09000 * 110.72047 * 279.05575 * 18 17 16 39 39 H 1.09001 * 110.72140 * 155.77197 * 18 17 16 40 40 H 1.08990 * 109.47300 * 58.54974 * 21 19 18 41 41 H 1.08999 * 109.46864 * 178.54725 * 21 19 18 42 42 H 1.08998 * 109.47178 * 298.54392 * 21 19 18 43 43 H 1.09005 * 109.47032 * 187.41046 * 24 22 16 44 44 H 1.08997 * 109.47615 * 307.40609 * 24 22 16 45 45 H 0.96698 * 114.00214 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6858 1.8351 -1.7039 6 1 4.3428 1.2309 -1.0959 7 6 4.1490 2.3897 -2.8780 8 7 3.3487 3.1249 -3.6186 9 14 5.9130 2.0956 -3.4177 10 1 5.9758 0.8744 -4.2604 11 1 6.3921 3.2626 -4.2010 12 1 6.7734 1.9159 -2.2209 13 6 2.2430 2.0166 1.1671 14 8 2.6477 3.1599 1.1671 15 6 1.9914 1.3063 2.4723 16 7 2.3103 2.2060 3.5888 17 6 3.7783 2.3872 3.7240 18 6 3.9416 2.8828 5.1828 19 6 2.8731 2.0672 5.9466 20 1 3.3267 1.1926 6.4129 21 6 2.1947 2.9401 7.0043 22 6 1.8542 1.6365 4.8754 23 1 1.8219 0.5490 4.8094 24 6 0.4683 2.1825 5.2248 25 8 -0.4904 1.6821 4.2907 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.5816 1.6878 -2.0284 32 1 2.0955 3.1411 -1.1384 33 1 3.6747 3.5154 -4.4445 34 1 2.6212 0.4186 2.5302 35 1 0.9433 1.0125 2.5299 36 1 4.1399 3.1369 3.0202 37 1 4.2977 1.4399 3.5790 38 1 3.7346 3.9506 5.2528 39 1 4.9399 2.6569 5.5575 40 1 1.7364 3.8039 6.5231 41 1 1.4272 2.3598 7.5164 42 1 2.9372 3.2782 7.7271 43 1 0.1955 1.8641 6.2310 44 1 0.4849 3.2714 5.1803 45 1 -1.3935 1.9878 4.4520 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248993508.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:29:07 Heat of formation + Delta-G solvation = -78.522052 kcal Electronic energy + Delta-G solvation = -23970.881550 eV Core-core repulsion = 20602.497890 eV Total energy + Delta-G solvation = -3368.383660 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.89232 -38.45451 -36.25889 -35.09945 -33.47790 -32.66255 -30.50336 -29.96539 -28.42006 -26.77097 -24.83934 -24.53814 -22.90968 -22.26874 -21.06469 -19.21498 -18.23590 -17.45792 -16.48515 -16.22191 -16.18306 -15.15520 -15.03242 -14.95015 -14.44082 -13.99970 -13.68008 -13.59154 -13.21467 -13.15599 -12.93834 -12.76867 -12.39851 -12.09309 -11.92056 -11.60640 -11.60072 -11.32557 -11.17867 -11.00881 -10.88118 -10.83522 -10.73513 -10.61602 -10.47172 -10.43887 -10.04894 -9.88270 -9.54940 -8.74149 -8.37516 -8.10281 -7.50964 -5.97915 -4.02279 3.33147 3.39582 3.43746 3.64305 3.78176 4.12394 4.30735 4.48733 4.56820 4.75068 4.82272 5.22889 5.23027 5.25217 5.27182 5.35282 5.36908 5.41132 5.46689 5.57697 5.61320 5.64539 5.74327 5.78769 5.84215 5.88320 5.97348 6.00954 6.06494 6.15936 6.25395 6.34036 6.38532 6.61178 7.06002 7.10641 7.27720 7.55962 7.64649 7.69011 8.00063 8.32159 8.59299 8.98824 9.29946 9.62933 11.10015 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.020467 B = 0.004602 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.709195 B = 6083.034850 C = 6980.034993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 N -0.602 5.602 4 C 0.248 3.752 5 C -0.523 4.523 6 H 0.055 0.945 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.510 3.490 14 O -0.527 6.527 15 C 0.031 3.969 16 N -0.485 5.485 17 C 0.034 3.966 18 C -0.118 4.118 19 C -0.096 4.096 20 H 0.076 0.924 21 C -0.148 4.148 22 C 0.068 3.932 23 H 0.055 0.945 24 C 0.091 3.909 25 O -0.571 6.571 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.030 0.970 32 H 0.042 0.958 33 H 0.262 0.738 34 H 0.051 0.949 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.039 0.961 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.046 0.954 44 H 0.056 0.944 45 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.745 -5.814 19.768 21.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.016 4.016 3 N -0.335 5.335 4 C 0.129 3.871 5 C -0.562 4.562 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.296 3.704 14 O -0.403 6.403 15 C -0.100 4.100 16 N -0.209 5.209 17 C -0.093 4.093 18 C -0.156 4.156 19 C -0.115 4.115 20 H 0.095 0.905 21 C -0.205 4.205 22 C -0.041 4.041 23 H 0.073 0.927 24 C 0.013 3.987 25 O -0.376 6.376 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.126 0.874 36 H 0.117 0.883 37 H 0.057 0.943 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -5.260 -4.885 19.208 20.506 hybrid contribution 0.846 -0.853 -0.105 1.206 sum -4.414 -5.739 19.103 20.429 Atomic orbital electron populations 1.22221 0.96811 1.01227 1.02476 1.21370 0.93571 0.84409 1.02257 1.48234 1.64417 1.13145 1.07679 1.19215 0.96010 0.93653 0.78233 1.21451 0.97027 1.31624 1.06084 0.92639 1.24929 0.97730 0.95011 0.96453 1.69942 1.35601 1.33609 1.14303 0.86520 0.84870 0.77622 0.78537 1.20709 1.21117 1.19985 1.20125 0.78592 0.87047 0.84673 1.90634 1.44934 1.17770 1.86939 1.22293 1.03137 0.93746 0.90873 1.64365 1.12553 1.43336 1.00683 1.23328 0.88107 1.00735 0.97126 1.22593 0.97874 1.00553 0.94592 1.21946 0.95536 0.98827 0.95178 0.90542 1.21952 1.00437 0.99960 0.98159 1.22395 0.93677 0.97598 0.90432 0.92658 1.22394 0.87863 0.98099 0.90380 1.86467 1.20367 1.74784 1.55993 0.92415 0.92706 0.92156 0.90192 0.92157 0.95201 0.93964 0.92810 0.93102 0.87364 0.88293 0.94312 0.90446 0.91173 0.91714 0.92516 0.92549 0.93576 0.92559 0.77847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 10.24 37.16 0.38 -2.11 16 2 C 0.11 1.87 5.93 -4.04 -0.02 1.85 16 3 N -0.60 -13.42 2.46 -175.05 -0.43 -13.85 16 4 C 0.25 6.73 5.16 -5.19 -0.03 6.71 16 5 C -0.52 -15.22 9.39 -34.44 -0.32 -15.54 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 9 Si 0.90 22.29 29.54 -169.99 -5.02 17.26 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.51 11.36 7.50 -10.98 -0.08 11.27 16 14 O -0.53 -13.94 14.65 5.56 0.08 -13.86 16 15 C 0.03 0.53 3.68 -4.97 -0.02 0.51 16 16 N -0.49 -7.83 4.53 -224.01 -1.01 -8.85 16 17 C 0.03 0.54 5.93 -1.90 -0.01 0.52 16 18 C -0.12 -1.38 6.61 -24.87 -0.16 -1.54 16 19 C -0.10 -0.97 3.59 -89.27 -0.32 -1.29 16 20 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 21 C -0.15 -1.20 7.90 37.16 0.29 -0.91 16 22 C 0.07 0.84 2.78 -66.64 -0.19 0.66 16 23 H 0.06 0.69 7.77 -51.93 -0.40 0.28 16 24 C 0.09 0.98 5.50 37.16 0.20 1.19 16 25 O -0.57 -6.70 12.21 -35.23 -0.43 -7.13 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.80 7.22 -51.93 -0.37 0.43 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 30 H 0.06 0.90 6.44 -51.93 -0.33 0.56 16 31 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 32 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.05 0.81 7.09 -51.93 -0.37 0.44 16 35 H 0.11 1.78 5.73 -51.93 -0.30 1.48 16 36 H 0.10 1.86 7.10 -51.93 -0.37 1.49 16 37 H 0.04 0.58 7.81 -51.93 -0.41 0.18 16 38 H 0.08 0.93 7.86 -51.93 -0.41 0.52 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.57 6.76 -51.93 -0.35 0.22 16 41 H 0.06 0.39 6.77 -51.93 -0.35 0.04 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.05 0.39 6.55 -51.93 -0.34 0.05 16 44 H 0.06 0.65 6.95 -51.93 -0.36 0.29 16 45 H 0.38 2.73 9.12 45.56 0.42 3.15 16 LS Contribution 351.21 15.07 5.29 5.29 Total: -1.00 -34.85 351.21 -7.99 -42.84 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -6.83 Total: 1.75 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -0.37 Total: 2.98 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: -0.71 Total: -49.14 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.35 Total: -20.98 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.85 -7.99 -42.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248993508.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.681 kcal (2) G-P(sol) polarization free energy of solvation -34.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds