Wall clock time and date at job start Fri Apr 10 2020 17:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46496 * 109.46982 * 2 1 4 4 C 1.46509 * 120.00086 * 270.00244 * 3 2 1 5 5 C 1.50703 * 109.46901 * 270.00152 * 4 3 2 6 6 H 1.07994 * 120.00053 * 359.97438 * 5 4 3 7 7 C 1.37872 * 119.99952 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99753 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00153 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47117 * 90.00001 * 9 7 5 11 11 H 1.48497 * 109.47086 * 209.99951 * 9 7 5 12 12 H 1.48492 * 109.46986 * 329.99752 * 9 7 5 13 13 C 1.34775 * 120.00310 * 90.00298 * 3 2 1 14 14 O 1.21280 * 120.00270 * 179.97438 * 13 3 2 15 15 C 1.50704 * 119.99516 * 359.97438 * 13 3 2 16 16 N 1.46900 * 109.46935 * 179.97438 * 15 13 3 17 17 C 1.48529 * 111.00554 * 287.39860 * 16 15 13 18 18 C 1.54934 * 103.22912 * 200.27949 * 17 16 15 19 19 C 1.54597 * 102.92105 * 37.41269 * 18 17 16 20 20 H 1.09004 * 110.30592 * 97.05953 * 19 18 17 21 21 C 1.52998 * 110.30546 * 219.12696 * 19 18 17 22 22 C 1.47907 * 110.99845 * 170.00023 * 16 15 13 23 23 H 1.08996 * 109.91720 * 26.48982 * 22 16 15 24 24 C 1.52996 * 109.91478 * 265.19933 * 22 16 15 25 25 O 1.42902 * 109.47528 * 67.41369 * 24 22 16 26 26 H 1.09002 * 109.47142 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46916 * 299.99835 * 1 2 3 28 28 H 1.09003 * 109.47179 * 59.99850 * 1 2 3 29 29 H 1.09005 * 109.46916 * 240.00165 * 2 1 3 30 30 H 1.09003 * 109.47179 * 120.00150 * 2 1 3 31 31 H 1.08998 * 109.46899 * 30.00207 * 4 3 2 32 32 H 1.08999 * 109.46869 * 150.00206 * 4 3 2 33 33 H 0.97004 * 119.99668 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.47350 * 60.00119 * 15 13 3 35 35 H 1.08997 * 109.47297 * 299.99965 * 15 13 3 36 36 H 1.09002 * 110.67056 * 81.84058 * 17 16 15 37 37 H 1.08999 * 110.66437 * 318.71748 * 17 16 15 38 38 H 1.09000 * 110.72047 * 279.05575 * 18 17 16 39 39 H 1.09001 * 110.72140 * 155.77197 * 18 17 16 40 40 H 1.08990 * 109.47300 * 58.54974 * 21 19 18 41 41 H 1.08999 * 109.46864 * 178.54725 * 21 19 18 42 42 H 1.08998 * 109.47178 * 298.54392 * 21 19 18 43 43 H 1.09005 * 109.47032 * 187.41046 * 24 22 16 44 44 H 1.08997 * 109.47615 * 307.40609 * 24 22 16 45 45 H 0.96698 * 114.00214 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6858 1.8351 -1.7039 6 1 4.3428 1.2309 -1.0959 7 6 4.1490 2.3897 -2.8780 8 7 3.3487 3.1249 -3.6186 9 14 5.9130 2.0956 -3.4177 10 1 5.9758 0.8744 -4.2604 11 1 6.3921 3.2626 -4.2010 12 1 6.7734 1.9159 -2.2209 13 6 2.2430 2.0166 1.1671 14 8 2.6477 3.1599 1.1671 15 6 1.9914 1.3063 2.4723 16 7 2.3103 2.2060 3.5888 17 6 3.7783 2.3872 3.7240 18 6 3.9416 2.8828 5.1828 19 6 2.8731 2.0672 5.9466 20 1 3.3267 1.1926 6.4129 21 6 2.1947 2.9401 7.0043 22 6 1.8542 1.6365 4.8754 23 1 1.8219 0.5490 4.8094 24 6 0.4683 2.1825 5.2248 25 8 -0.4904 1.6821 4.2907 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.5816 1.6878 -2.0284 32 1 2.0955 3.1411 -1.1384 33 1 3.6747 3.5154 -4.4445 34 1 2.6212 0.4186 2.5302 35 1 0.9433 1.0125 2.5299 36 1 4.1399 3.1369 3.0202 37 1 4.2977 1.4399 3.5790 38 1 3.7346 3.9506 5.2528 39 1 4.9399 2.6569 5.5575 40 1 1.7364 3.8039 6.5231 41 1 1.4272 2.3598 7.5164 42 1 2.9372 3.2782 7.7271 43 1 0.1955 1.8641 6.2310 44 1 0.4849 3.2714 5.1803 45 1 -1.3935 1.9878 4.4520 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000248993508.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:29:05 Heat of formation + Delta-G solvation = -105.376501 kcal Electronic energy + Delta-G solvation = -23972.046046 eV Core-core repulsion = 20602.497890 eV Total energy + Delta-G solvation = -3369.548156 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.16859 -39.94005 -37.17605 -36.83611 -35.00638 -34.40992 -31.66202 -31.47079 -29.87393 -28.35623 -26.19585 -25.43200 -24.65568 -23.87690 -22.20868 -20.18048 -19.81844 -18.63089 -18.35802 -17.86404 -17.47361 -16.75556 -16.38958 -16.13006 -16.05439 -15.49846 -14.85723 -14.68880 -14.55474 -14.38459 -14.24637 -14.01166 -13.67690 -13.55862 -13.32624 -13.21725 -13.09120 -12.69177 -12.60595 -12.52053 -12.35669 -12.25060 -12.11789 -11.87165 -11.75373 -11.72336 -11.61525 -11.36261 -10.69488 -10.64834 -10.47794 -9.41089 -9.33776 -8.22500 -6.37864 1.34439 1.37940 1.48230 1.89832 2.23855 2.40955 3.04139 3.06600 3.32276 3.59878 3.80374 3.87912 3.98668 4.08610 4.24776 4.25595 4.34865 4.41669 4.43733 4.52677 4.59739 4.63683 4.72763 4.74725 4.85994 4.90611 4.95100 4.98496 5.00977 5.04702 5.17330 5.19783 5.22457 5.29092 5.38138 5.46955 5.58052 5.85943 5.94104 6.05823 6.07376 6.70279 6.84339 7.01657 7.28560 7.56087 8.84595 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.020467 B = 0.004602 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.709195 B = 6083.034850 C = 6980.034993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.102 3.898 3 N -0.607 5.607 4 C 0.265 3.735 5 C -0.542 4.542 6 H 0.051 0.949 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.969 3.031 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.274 1.274 13 C 0.499 3.501 14 O -0.581 6.581 15 C 0.050 3.950 16 N -0.509 5.509 17 C 0.031 3.969 18 C -0.111 4.111 19 C -0.088 4.088 20 H 0.097 0.903 21 C -0.144 4.144 22 C 0.063 3.937 23 H 0.061 0.939 24 C 0.092 3.908 25 O -0.593 6.593 26 H 0.096 0.904 27 H 0.056 0.944 28 H 0.039 0.961 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.020 0.980 32 H -0.007 1.007 33 H 0.267 0.733 34 H 0.070 0.930 35 H 0.122 0.878 36 H 0.052 0.948 37 H 0.042 0.958 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.052 0.948 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.044 0.956 45 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.577 -8.075 22.063 24.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.021 4.021 3 N -0.339 5.339 4 C 0.144 3.856 5 C -0.580 4.580 6 H 0.069 0.931 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.794 3.206 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.199 1.199 13 C 0.287 3.713 14 O -0.461 6.461 15 C -0.081 4.081 16 N -0.234 5.234 17 C -0.097 4.097 18 C -0.149 4.149 19 C -0.107 4.107 20 H 0.116 0.884 21 C -0.201 4.201 22 C -0.045 4.045 23 H 0.079 0.921 24 C 0.014 3.986 25 O -0.401 6.401 26 H 0.114 0.886 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.038 0.962 32 H 0.011 0.989 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.139 0.861 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.062 0.938 45 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -5.134 -7.191 21.528 23.270 hybrid contribution 0.733 -0.123 -0.830 1.115 sum -4.400 -7.314 20.697 22.388 Atomic orbital electron populations 1.22130 0.94570 1.03421 1.01552 1.21700 0.95381 0.81509 1.03500 1.48285 1.64419 1.15021 1.06205 1.18656 0.95285 0.91327 0.80374 1.21686 0.97805 1.32020 1.06517 0.93095 1.25879 1.02516 0.94403 0.96363 1.70066 1.37821 1.34226 1.14760 0.85391 0.78810 0.78281 0.78167 1.18648 1.20510 1.19876 1.21150 0.77217 0.86683 0.86211 1.90602 1.47266 1.20349 1.87850 1.22105 1.04086 0.93547 0.88331 1.64301 1.12854 1.44114 1.02128 1.23240 0.88121 0.99670 0.98677 1.22563 0.99830 1.00302 0.92192 1.21970 0.94363 0.99557 0.94789 0.88444 1.21928 1.01089 0.99418 0.97702 1.22599 0.95086 0.97856 0.88956 0.92094 1.22437 0.87070 0.97357 0.91742 1.86399 1.21807 1.75107 1.56796 0.88565 0.92490 0.94207 0.90824 0.88966 0.96166 0.98908 0.92397 0.91271 0.86070 0.92907 0.93985 0.91296 0.89162 0.92867 0.90614 0.91349 0.90254 0.93773 0.75795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.43 10.24 71.98 0.74 -3.70 16 2 C 0.10 3.42 5.93 86.38 0.51 3.93 16 3 N -0.61 -27.93 2.46 -826.12 -2.03 -29.96 16 4 C 0.27 15.19 5.16 85.63 0.44 15.63 16 5 C -0.54 -32.62 9.39 25.60 0.24 -32.38 16 6 H 0.05 3.04 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.43 5.46 84.65 0.46 0.89 16 8 N -0.93 -58.02 13.29 21.45 0.28 -57.74 16 9 Si 0.97 46.25 29.54 68.60 2.03 48.27 16 10 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 13 C 0.50 23.01 7.50 87.66 0.66 23.67 16 14 O -0.58 -32.75 14.65 -3.03 -0.04 -32.79 16 15 C 0.05 1.70 3.68 85.56 0.31 2.02 16 16 N -0.51 -16.28 4.53 -862.64 -3.90 -20.19 16 17 C 0.03 0.97 5.93 86.65 0.51 1.48 16 18 C -0.11 -2.46 6.61 31.80 0.21 -2.25 16 19 C -0.09 -1.52 3.59 -9.92 -0.04 -1.55 16 20 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 21 C -0.14 -1.88 7.90 71.98 0.57 -1.32 16 22 C 0.06 1.41 2.78 45.05 0.13 1.54 16 23 H 0.06 1.31 7.77 -2.39 -0.02 1.29 16 24 C 0.09 1.76 5.50 71.98 0.40 2.16 16 25 O -0.59 -12.60 12.21 -148.98 -1.82 -14.42 16 26 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.06 1.57 7.22 -2.38 -0.02 1.55 16 28 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.07 2.57 8.07 -2.38 -0.02 2.55 16 30 H 0.09 2.52 6.44 -2.39 -0.02 2.50 16 31 H 0.02 1.18 8.07 -2.39 -0.02 1.16 16 32 H -0.01 -0.48 7.42 -2.39 -0.02 -0.50 16 33 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 34 H 0.07 2.08 7.09 -2.39 -0.02 2.06 16 35 H 0.12 3.78 5.73 -2.39 -0.01 3.77 16 36 H 0.05 2.13 7.10 -2.39 -0.02 2.12 16 37 H 0.04 1.26 7.81 -2.39 -0.02 1.24 16 38 H 0.07 1.63 7.86 -2.39 -0.02 1.61 16 39 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.05 0.83 6.76 -2.39 -0.02 0.82 16 41 H 0.08 0.72 6.77 -2.39 -0.02 0.70 16 42 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.08 1.01 6.55 -2.38 -0.02 0.99 16 44 H 0.04 0.96 6.95 -2.39 -0.02 0.94 16 45 H 0.39 4.91 9.12 -74.06 -0.68 4.23 16 Total: -1.00 -80.40 351.21 -0.04 -80.45 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 0.30 Total: 16.26 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 5.14 Total: 10.12 kcal Atomic # 7 Polarization: -102.24 SS G_CDS: -5.65 Total: -107.88 kcal Atomic # 8 Polarization: -45.35 SS G_CDS: -1.86 Total: -47.21 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Total: -80.40 -0.04 -80.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248993508.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.931 kcal (2) G-P(sol) polarization free energy of solvation -80.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds