Wall clock time and date at job start Fri Apr 10 2020 17:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.46942 * 2 1 4 4 C 1.46501 * 120.00250 * 269.99971 * 3 2 1 5 5 C 1.50702 * 109.47275 * 270.00492 * 4 3 2 6 6 H 1.07998 * 119.99794 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99733 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00272 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99735 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47018 * 59.99881 * 9 7 5 11 11 H 1.48497 * 109.46964 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47013 * 299.99965 * 9 7 5 13 13 C 1.34775 * 120.00369 * 90.00317 * 3 2 1 14 14 O 1.21280 * 120.00702 * 179.97438 * 13 3 2 15 15 C 1.50706 * 119.99774 * 359.97438 * 13 3 2 16 16 N 1.46895 * 109.47442 * 186.22106 * 15 13 3 17 17 C 1.47015 * 110.99986 * 66.41507 * 16 15 13 18 18 C 1.53099 * 109.29294 * 182.37504 * 17 16 15 19 19 H 1.08996 * 109.50951 * 63.10671 * 18 17 16 20 20 C 1.53000 * 109.50613 * 183.24304 * 18 17 16 21 21 O 1.43020 * 109.25213 * 303.21665 * 18 17 16 22 22 C 1.43014 * 113.77611 * 58.60518 * 21 18 17 23 23 C 1.47006 * 111.00132 * 190.05129 * 16 15 13 24 24 H 1.09005 * 109.50686 * 57.67656 * 23 16 15 25 25 C 1.52998 * 109.51084 * 297.54352 * 23 16 15 26 26 H 1.08997 * 109.46934 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46993 * 299.99551 * 1 2 3 28 28 H 1.08992 * 109.47312 * 59.99978 * 1 2 3 29 29 H 1.08999 * 109.46993 * 240.00449 * 2 1 3 30 30 H 1.08998 * 109.47479 * 120.00439 * 2 1 3 31 31 H 1.09005 * 109.47111 * 30.00158 * 4 3 2 32 32 H 1.09003 * 109.47289 * 149.99848 * 4 3 2 33 33 H 0.97001 * 119.99638 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.47178 * 66.21543 * 15 13 3 35 35 H 1.09007 * 109.46862 * 306.21946 * 15 13 3 36 36 H 1.09004 * 109.50900 * 302.33031 * 17 16 15 37 37 H 1.08994 * 109.50386 * 62.41648 * 17 16 15 38 38 H 1.09000 * 109.47574 * 59.99531 * 20 18 17 39 39 H 1.09002 * 109.47313 * 180.02562 * 20 18 17 40 40 H 1.09002 * 109.46847 * 299.99522 * 20 18 17 41 41 H 1.09004 * 109.51067 * 181.41505 * 22 21 18 42 42 H 1.09005 * 109.54299 * 61.30868 * 22 21 18 43 43 H 1.09000 * 109.47364 * 56.04776 * 25 23 16 44 44 H 1.08998 * 109.47571 * 176.05415 * 25 23 16 45 45 H 1.09001 * 109.46643 * 296.04923 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3428 1.2308 -1.0959 7 6 4.1489 2.3897 -2.8780 8 7 3.3486 3.1250 -3.6186 9 14 5.9134 2.0967 -3.4170 10 1 6.1416 0.6401 -3.5938 11 1 6.1608 2.7967 -4.7031 12 1 6.8405 2.6210 -2.3823 13 6 2.2430 2.0166 1.1671 14 8 2.6477 3.1599 1.1672 15 6 1.9914 1.3063 2.4723 16 7 2.1658 2.2496 3.5848 17 6 1.1306 3.2931 3.5580 18 6 1.3836 4.2860 4.6956 19 1 2.3408 4.7831 4.5388 20 6 0.2638 5.3282 4.7226 21 8 1.4108 3.5808 5.9396 22 6 2.4080 2.5575 6.0006 23 6 2.1643 1.5473 4.8762 24 1 2.9550 0.7970 4.8834 25 6 0.8105 0.8662 5.0859 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.5816 1.6877 -2.0284 32 1 2.0954 3.1411 -1.1384 33 1 3.6745 3.5149 -4.4448 34 1 2.6975 0.4829 2.5799 35 1 0.9736 0.9160 2.4832 36 1 1.1665 3.8172 2.6029 37 1 0.1495 2.8357 3.6855 38 1 -0.6926 4.8301 4.8814 39 1 0.4447 6.0351 5.5324 40 1 0.2419 5.8625 3.7727 41 1 2.3510 2.0506 6.9639 42 1 3.3956 3.0032 5.8818 43 1 0.6041 0.2019 4.2467 44 1 0.8336 0.2882 6.0097 45 1 0.0290 1.6234 5.1506 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249715240.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:29:20 Heat of formation + Delta-G solvation = -73.501205 kcal Electronic energy + Delta-G solvation = -24106.243852 eV Core-core repulsion = 20738.077912 eV Total energy + Delta-G solvation = -3368.165940 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.26532 -38.74120 -35.86413 -35.15800 -33.11249 -32.78244 -30.45325 -30.05471 -28.21609 -26.71805 -26.32975 -24.55359 -23.02915 -22.50763 -21.86976 -19.26793 -18.31022 -16.91677 -16.44092 -16.34940 -16.10307 -15.63299 -15.06694 -14.90305 -14.63128 -14.23161 -13.95909 -13.47961 -13.39611 -13.18995 -12.96232 -12.55324 -12.35194 -12.21207 -12.09361 -11.98433 -11.90172 -11.57698 -11.53010 -11.19555 -11.05840 -10.99146 -10.91392 -10.71540 -10.52636 -10.33501 -10.11143 -9.63966 -9.57096 -8.83927 -8.41614 -8.15683 -7.62624 -6.02689 -4.07213 3.32928 3.37462 3.39276 3.47091 3.56509 3.76564 4.16111 4.46820 4.73637 4.83761 4.91570 5.01758 5.15418 5.21933 5.29004 5.30065 5.32714 5.34863 5.50531 5.53475 5.57433 5.60351 5.62678 5.65260 5.71321 5.77289 5.82941 5.97600 6.00641 6.03994 6.13743 6.19996 6.21699 6.45418 6.90531 7.04797 7.14955 7.23079 7.45877 7.57831 7.94109 8.25600 8.45473 8.92652 9.15140 9.57979 11.05313 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.020365 B = 0.004412 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.558938 B = 6344.144919 C = 6740.849206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.248 3.752 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.506 3.494 14 O -0.523 6.523 15 C 0.036 3.964 16 N -0.511 5.511 17 C 0.021 3.979 18 C 0.091 3.909 19 H 0.069 0.931 20 C -0.143 4.143 21 O -0.385 6.385 22 C 0.072 3.928 23 C 0.042 3.958 24 H 0.091 0.909 25 C -0.183 4.183 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.031 0.969 32 H 0.042 0.958 33 H 0.263 0.737 34 H 0.097 0.903 35 H 0.058 0.942 36 H 0.102 0.898 37 H 0.038 0.962 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.151 -5.273 16.616 18.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.333 5.333 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.140 4.140 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.291 3.709 14 O -0.399 6.399 15 C -0.095 4.095 16 N -0.235 5.235 17 C -0.106 4.106 18 C 0.033 3.967 19 H 0.087 0.913 20 C -0.200 4.200 21 O -0.304 6.304 22 C -0.005 4.005 23 C -0.067 4.067 24 H 0.109 0.891 25 C -0.242 4.242 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.115 0.885 35 H 0.076 0.924 36 H 0.120 0.880 37 H 0.056 0.944 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.113 0.887 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.602 -4.264 16.501 18.277 hybrid contribution 0.394 -0.888 -0.620 1.152 sum -6.208 -5.151 15.881 17.812 Atomic orbital electron populations 1.22222 0.96934 1.01347 1.02201 1.21387 0.93377 0.84405 1.02562 1.48270 1.64092 1.13204 1.07711 1.19235 0.96193 0.93563 0.78079 1.21401 0.96943 1.31891 1.06176 0.92565 1.24925 0.97795 0.94928 0.96399 1.69923 1.35710 1.33513 1.14337 0.86569 0.84900 0.78207 0.77805 1.20290 1.21199 1.20179 1.20129 0.78876 0.87167 0.84683 1.90648 1.44594 1.17864 1.86824 1.22113 1.01197 0.95424 0.90736 1.62029 1.48186 1.12429 1.00832 1.22924 0.92402 0.93913 1.01400 1.22146 0.99656 0.92027 0.82823 0.91300 1.21731 0.97719 0.97853 1.02715 1.87920 1.56842 1.49844 1.35759 1.22589 0.92029 0.88351 0.97504 1.22441 0.97675 0.96271 0.90310 0.89099 1.22388 0.98880 1.01005 1.01888 0.92206 0.93338 0.91968 0.89909 0.91999 0.95135 0.93987 0.92706 0.88500 0.92409 0.87971 0.94407 0.92163 0.91780 0.90684 0.88715 0.92291 0.92528 0.92067 0.91668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.18 37.16 0.38 -1.86 16 2 C 0.11 1.69 5.85 -4.04 -0.02 1.67 16 3 N -0.60 -12.54 2.46 -175.06 -0.43 -12.97 16 4 C 0.25 6.47 5.16 -5.19 -0.03 6.44 16 5 C -0.53 -14.93 9.39 -34.44 -0.32 -15.25 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -26.68 13.29 55.43 0.74 -25.95 16 9 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.51 10.47 7.25 -10.98 -0.08 10.39 16 14 O -0.52 -13.09 14.26 5.56 0.08 -13.01 16 15 C 0.04 0.56 3.28 -4.98 -0.02 0.54 16 16 N -0.51 -7.72 4.37 -227.77 -1.00 -8.71 16 17 C 0.02 0.32 4.19 -3.71 -0.02 0.30 16 18 C 0.09 1.23 3.43 -26.68 -0.09 1.14 16 19 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 20 C -0.14 -1.60 9.57 37.16 0.36 -1.24 16 21 O -0.38 -5.04 9.85 -35.23 -0.35 -5.39 16 22 C 0.07 0.81 6.41 37.21 0.24 1.05 16 23 C 0.04 0.49 2.97 -67.60 -0.20 0.29 16 24 H 0.09 0.96 8.09 -51.93 -0.42 0.54 16 25 C -0.18 -1.88 8.43 37.16 0.31 -1.57 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.62 7.12 -51.93 -0.37 0.25 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 30 H 0.06 0.81 6.61 -51.93 -0.34 0.47 16 31 H 0.03 0.80 8.07 -51.93 -0.42 0.39 16 32 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.10 1.34 7.61 -51.93 -0.40 0.95 16 35 H 0.06 0.78 5.52 -51.93 -0.29 0.49 16 36 H 0.10 1.82 6.11 -51.93 -0.32 1.51 16 37 H 0.04 0.53 6.48 -51.93 -0.34 0.19 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.57 6.50 -51.93 -0.34 0.23 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.75 6.17 -51.93 -0.32 0.43 16 LS Contribution 349.81 15.07 5.27 5.27 Total: -1.00 -32.88 349.81 -8.00 -40.88 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -7.70 Total: -0.67 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 0.41 Total: 3.58 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: -0.69 Total: -47.63 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.27 Total: -18.40 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.88 -8.00 -40.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249715240.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.621 kcal (2) G-P(sol) polarization free energy of solvation -32.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds