Wall clock time and date at job start Fri Apr 10 2020 17:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.46942 * 2 1 4 4 C 1.46501 * 120.00250 * 269.99971 * 3 2 1 5 5 C 1.50702 * 109.47275 * 270.00492 * 4 3 2 6 6 H 1.07998 * 119.99794 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99733 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00272 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99735 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47018 * 59.99881 * 9 7 5 11 11 H 1.48497 * 109.46964 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47013 * 299.99965 * 9 7 5 13 13 C 1.34775 * 120.00369 * 90.00317 * 3 2 1 14 14 O 1.21280 * 120.00702 * 179.97438 * 13 3 2 15 15 C 1.50706 * 119.99774 * 359.97438 * 13 3 2 16 16 N 1.46895 * 109.47442 * 186.22106 * 15 13 3 17 17 C 1.47015 * 110.99986 * 66.41507 * 16 15 13 18 18 C 1.53099 * 109.29294 * 182.37504 * 17 16 15 19 19 H 1.08996 * 109.50951 * 63.10671 * 18 17 16 20 20 C 1.53000 * 109.50613 * 183.24304 * 18 17 16 21 21 O 1.43020 * 109.25213 * 303.21665 * 18 17 16 22 22 C 1.43014 * 113.77611 * 58.60518 * 21 18 17 23 23 C 1.47006 * 111.00132 * 190.05129 * 16 15 13 24 24 H 1.09005 * 109.50686 * 57.67656 * 23 16 15 25 25 C 1.52998 * 109.51084 * 297.54352 * 23 16 15 26 26 H 1.08997 * 109.46934 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46993 * 299.99551 * 1 2 3 28 28 H 1.08992 * 109.47312 * 59.99978 * 1 2 3 29 29 H 1.08999 * 109.46993 * 240.00449 * 2 1 3 30 30 H 1.08998 * 109.47479 * 120.00439 * 2 1 3 31 31 H 1.09005 * 109.47111 * 30.00158 * 4 3 2 32 32 H 1.09003 * 109.47289 * 149.99848 * 4 3 2 33 33 H 0.97001 * 119.99638 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.47178 * 66.21543 * 15 13 3 35 35 H 1.09007 * 109.46862 * 306.21946 * 15 13 3 36 36 H 1.09004 * 109.50900 * 302.33031 * 17 16 15 37 37 H 1.08994 * 109.50386 * 62.41648 * 17 16 15 38 38 H 1.09000 * 109.47574 * 59.99531 * 20 18 17 39 39 H 1.09002 * 109.47313 * 180.02562 * 20 18 17 40 40 H 1.09002 * 109.46847 * 299.99522 * 20 18 17 41 41 H 1.09004 * 109.51067 * 181.41505 * 22 21 18 42 42 H 1.09005 * 109.54299 * 61.30868 * 22 21 18 43 43 H 1.09000 * 109.47364 * 56.04776 * 25 23 16 44 44 H 1.08998 * 109.47571 * 176.05415 * 25 23 16 45 45 H 1.09001 * 109.46643 * 296.04923 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3428 1.2308 -1.0959 7 6 4.1489 2.3897 -2.8780 8 7 3.3486 3.1250 -3.6186 9 14 5.9134 2.0967 -3.4170 10 1 6.1416 0.6401 -3.5938 11 1 6.1608 2.7967 -4.7031 12 1 6.8405 2.6210 -2.3823 13 6 2.2430 2.0166 1.1671 14 8 2.6477 3.1599 1.1672 15 6 1.9914 1.3063 2.4723 16 7 2.1658 2.2496 3.5848 17 6 1.1306 3.2931 3.5580 18 6 1.3836 4.2860 4.6956 19 1 2.3408 4.7831 4.5388 20 6 0.2638 5.3282 4.7226 21 8 1.4108 3.5808 5.9396 22 6 2.4080 2.5575 6.0006 23 6 2.1643 1.5473 4.8762 24 1 2.9550 0.7970 4.8834 25 6 0.8105 0.8662 5.0859 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.5816 1.6877 -2.0284 32 1 2.0954 3.1411 -1.1384 33 1 3.6745 3.5149 -4.4448 34 1 2.6975 0.4829 2.5799 35 1 0.9736 0.9160 2.4832 36 1 1.1665 3.8172 2.6029 37 1 0.1495 2.8357 3.6855 38 1 -0.6926 4.8301 4.8814 39 1 0.4447 6.0351 5.5324 40 1 0.2419 5.8625 3.7727 41 1 2.3510 2.0506 6.9639 42 1 3.3956 3.0032 5.8818 43 1 0.6041 0.2019 4.2467 44 1 0.8336 0.2882 6.0097 45 1 0.0290 1.6234 5.1506 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249715240.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:29:20 Heat of formation + Delta-G solvation = -96.730053 kcal Electronic energy + Delta-G solvation = -24107.251130 eV Core-core repulsion = 20738.077912 eV Total energy + Delta-G solvation = -3369.173218 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.44619 -40.20035 -37.13170 -36.65720 -34.90058 -34.09248 -31.79008 -31.34379 -29.64506 -28.24960 -27.26766 -25.93626 -24.63384 -23.88046 -23.06976 -20.30932 -19.84999 -18.63428 -18.14863 -17.54199 -17.28067 -17.09080 -16.56313 -16.15178 -15.92265 -15.73855 -15.19792 -14.69892 -14.66872 -14.38917 -14.34890 -14.03513 -13.58940 -13.41238 -13.27166 -13.14025 -13.12789 -12.98073 -12.88552 -12.64650 -12.51074 -12.49253 -12.18160 -12.11343 -11.97529 -11.86782 -11.71734 -11.33591 -10.71422 -10.64004 -10.38376 -9.43928 -9.24362 -8.21915 -6.36730 1.35921 1.40564 1.47639 1.86692 2.19627 2.40364 2.76906 2.92004 3.07489 3.62999 3.84058 3.90502 4.03982 4.07722 4.11699 4.15369 4.24965 4.37534 4.41734 4.44407 4.55368 4.61792 4.70072 4.72485 4.74107 4.78113 4.91582 4.95928 4.98215 4.99453 5.02577 5.04798 5.20659 5.22405 5.32596 5.36272 5.58438 5.81921 5.90154 6.04807 6.07685 6.22899 6.71300 6.83679 7.29625 7.54439 8.84816 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.020365 B = 0.004412 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.558938 B = 6344.144919 C = 6740.849206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.265 3.735 5 C -0.542 4.542 6 H 0.052 0.948 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.259 1.259 11 H -0.278 1.278 12 H -0.279 1.279 13 C 0.496 3.504 14 O -0.579 6.579 15 C 0.053 3.947 16 N -0.536 5.536 17 C 0.029 3.971 18 C 0.094 3.906 19 H 0.048 0.952 20 C -0.138 4.138 21 O -0.388 6.388 22 C 0.066 3.934 23 C 0.042 3.958 24 H 0.108 0.892 25 C -0.176 4.176 26 H 0.096 0.904 27 H 0.055 0.945 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.020 0.980 32 H -0.006 1.006 33 H 0.267 0.733 34 H 0.121 0.879 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.048 0.952 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.127 0.873 42 H 0.049 0.951 43 H 0.062 0.938 44 H 0.083 0.917 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.109 -7.850 18.517 21.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.338 5.338 4 C 0.144 3.856 5 C -0.580 4.580 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.184 1.184 11 H -0.203 1.203 12 H -0.205 1.205 13 C 0.284 3.716 14 O -0.459 6.459 15 C -0.078 4.078 16 N -0.261 5.261 17 C -0.099 4.099 18 C 0.036 3.964 19 H 0.066 0.934 20 C -0.196 4.196 21 O -0.307 6.307 22 C -0.010 4.010 23 C -0.066 4.066 24 H 0.126 0.874 25 C -0.235 4.235 26 H 0.115 0.885 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.117 0.883 31 H 0.038 0.962 32 H 0.012 0.988 33 H 0.076 0.924 34 H 0.139 0.861 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.144 0.856 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.102 0.898 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.584 -6.897 18.427 20.748 hybrid contribution 0.369 -0.082 -1.179 1.238 sum -6.215 -6.979 17.248 19.617 Atomic orbital electron populations 1.22146 0.94742 1.03477 1.01435 1.21728 0.95156 0.81457 1.03903 1.48295 1.64204 1.15112 1.06168 1.18649 0.95188 0.91381 0.80424 1.21682 0.97906 1.32001 1.06451 0.92936 1.25849 1.02337 0.94470 0.96437 1.70049 1.37801 1.34267 1.14771 0.85486 0.79067 0.79062 0.77299 1.18352 1.20339 1.20491 1.21185 0.77440 0.86749 0.86247 1.90621 1.46990 1.20482 1.87762 1.21999 1.03197 0.95009 0.87555 1.61963 1.48645 1.13102 1.02340 1.22752 0.93044 0.94161 0.99958 1.22067 0.99412 0.92102 0.82827 0.93426 1.21710 0.97301 0.97532 1.03037 1.87918 1.57398 1.50323 1.35078 1.22823 0.91169 0.88034 0.99000 1.22581 0.99314 0.96469 0.88268 0.87410 1.22325 0.97117 1.00693 1.03319 0.88513 0.92576 0.94309 0.90914 0.88264 0.96176 0.98788 0.92448 0.86143 0.89792 0.91810 0.93365 0.91278 0.90638 0.91000 0.85564 0.93249 0.91935 0.89814 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 10.18 71.98 0.73 -3.17 16 2 C 0.10 3.00 5.85 86.38 0.50 3.50 16 3 N -0.61 -25.76 2.46 -826.15 -2.03 -27.78 16 4 C 0.27 14.51 5.16 85.63 0.44 14.96 16 5 C -0.54 -31.67 9.39 25.60 0.24 -31.43 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.46 5.46 84.65 0.46 0.93 16 8 N -0.93 -56.95 13.29 21.45 0.28 -56.67 16 9 Si 0.97 45.47 29.54 68.60 2.03 47.50 16 10 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 13 C 0.50 20.84 7.25 87.66 0.64 21.48 16 14 O -0.58 -30.56 14.26 -3.03 -0.04 -30.60 16 15 C 0.05 1.52 3.28 85.56 0.28 1.80 16 16 N -0.54 -15.60 4.37 -874.54 -3.82 -19.42 16 17 C 0.03 0.87 4.19 86.31 0.36 1.23 16 18 C 0.09 2.55 3.43 30.63 0.11 2.65 16 19 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 20 C -0.14 -3.07 9.57 71.98 0.69 -2.38 16 21 O -0.39 -9.59 9.85 -148.98 -1.47 -11.06 16 22 C 0.07 1.34 6.41 72.02 0.46 1.80 16 23 C 0.04 0.85 2.97 44.93 0.13 0.99 16 24 H 0.11 1.86 8.09 -2.38 -0.02 1.85 16 25 C -0.18 -2.94 8.43 71.98 0.61 -2.34 16 26 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.06 1.28 7.12 -2.39 -0.02 1.27 16 28 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 30 H 0.10 2.25 6.61 -2.39 -0.02 2.23 16 31 H 0.02 1.12 8.07 -2.38 -0.02 1.11 16 32 H -0.01 -0.38 7.42 -2.39 -0.02 -0.40 16 33 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 34 H 0.12 2.91 7.61 -2.39 -0.02 2.89 16 35 H 0.08 1.99 5.52 -2.38 -0.01 1.97 16 36 H 0.06 2.42 6.11 -2.38 -0.01 2.40 16 37 H 0.05 1.32 6.48 -2.39 -0.02 1.30 16 38 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.13 1.75 8.14 -2.38 -0.02 1.73 16 42 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 43 H 0.06 0.97 6.50 -2.39 -0.02 0.96 16 44 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.05 1.02 6.17 -2.39 -0.01 1.00 16 Total: -1.00 -75.68 349.81 1.56 -74.13 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.95 Total: 13.89 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 5.65 Total: 10.02 kcal Atomic # 7 Polarization: -98.31 SS G_CDS: -5.57 Total: -103.87 kcal Atomic # 8 Polarization: -40.15 SS G_CDS: -1.51 Total: -41.66 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -75.68 1.56 -74.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249715240.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.601 kcal (2) G-P(sol) polarization free energy of solvation -75.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds