Wall clock time and date at job start Fri Apr 10 2020 17:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47279 * 2 1 4 4 H 1.09004 * 109.46704 * 305.83622 * 3 2 1 5 5 C 1.50703 * 109.47184 * 185.83701 * 3 2 1 6 6 H 1.07994 * 119.99851 * 334.00044 * 5 3 2 7 7 C 1.37872 * 119.99701 * 154.00516 * 5 3 2 8 8 N 1.31511 * 120.00220 * 6.29791 * 7 5 3 9 9 Si 1.86805 * 119.99737 * 186.30116 * 7 5 3 10 10 H 1.48499 * 109.46773 * 269.99849 * 9 7 5 11 11 H 1.48498 * 109.47289 * 29.99708 * 9 7 5 12 12 H 1.48498 * 109.47311 * 149.99839 * 9 7 5 13 13 N 1.46498 * 109.46845 * 65.83289 * 3 2 1 14 14 C 1.38444 * 120.00450 * 274.99538 * 13 3 2 15 15 N 1.32483 * 119.20325 * 359.73908 * 14 13 3 16 16 C 1.32282 * 120.75188 * 179.75101 * 15 14 13 17 17 C 1.38682 * 119.18305 * 0.50900 * 16 15 14 18 18 Br 1.89095 * 120.73263 * 179.76815 * 17 16 15 19 19 C 1.38678 * 118.53756 * 359.74814 * 17 16 15 20 20 N 1.32277 * 119.18704 * 359.97438 * 19 17 16 21 21 H 1.08998 * 109.47263 * 300.00417 * 1 2 3 22 22 H 1.09007 * 109.47021 * 60.00287 * 1 2 3 23 23 H 1.09002 * 109.46874 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47263 * 239.99583 * 2 1 3 25 25 H 1.09007 * 109.47021 * 119.99713 * 2 1 3 26 26 H 0.97001 * 120.00576 * 355.18167 * 8 7 5 27 27 H 0.97001 * 119.99627 * 95.00987 * 13 3 2 28 28 H 1.07993 * 120.41089 * 180.25056 * 16 15 14 29 29 H 1.07999 * 120.40641 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5938 1.9856 -0.8332 5 6 3.5401 1.4450 -0.1445 6 1 4.1155 0.5918 0.1831 7 6 4.1778 2.5364 -0.6948 8 7 3.4940 3.6232 -0.9793 9 14 6.0132 2.4715 -1.0365 10 1 6.7560 2.9516 0.1564 11 1 6.4115 1.0731 -1.3379 12 1 6.3312 3.3383 -2.1996 13 7 1.6697 2.0914 1.2602 14 6 0.4211 2.6732 1.3985 15 7 -0.4247 2.6386 0.3793 16 6 -1.6272 3.1806 0.4795 17 6 -1.9935 3.7989 1.6656 18 35 -3.6990 4.5935 1.8545 19 6 -1.0817 3.8213 2.7102 20 7 0.1024 3.2553 2.5451 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.5305 3.6332 -0.8676 27 1 2.2994 2.1135 1.9976 28 1 -2.3137 3.1457 -0.3534 29 1 -1.3352 4.2950 3.6470 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273843022.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:29:22 Heat of formation + Delta-G solvation = 47.125688 kcal Electronic energy + Delta-G solvation = -15097.141298 eV Core-core repulsion = 12487.562418 eV Total energy + Delta-G solvation = -2609.578881 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 285.017 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.49485 -36.55900 -33.35924 -33.07555 -32.06725 -31.05052 -28.56299 -26.40073 -24.37864 -23.20414 -22.38607 -20.20686 -17.98421 -17.24783 -16.61764 -15.17686 -14.95290 -14.19730 -14.05933 -13.88911 -13.26056 -13.22248 -12.90900 -12.45447 -11.43062 -11.19835 -10.96483 -10.86006 -10.64789 -10.56515 -10.35119 -10.26704 -10.22236 -9.99675 -9.26276 -8.84116 -8.72212 -8.58662 -7.21523 -6.67158 -4.48861 1.45523 1.55748 1.86844 3.29354 3.32693 3.49799 3.72850 4.30380 4.31575 4.59817 4.85221 5.08034 5.33881 5.43351 5.89978 5.93027 5.96760 6.10731 6.45540 6.59562 6.72251 6.83012 6.93874 7.17071 7.35919 7.62668 7.89659 8.15041 8.38065 8.57122 8.95458 9.31922 10.70562 Molecular weight = 285.02amu Principal moments of inertia in cm(-1) A = 0.034929 B = 0.004597 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.436890 B = 6089.189420 C = 6459.045352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.118 4.118 3 C 0.246 3.754 4 H 0.062 0.938 5 C -0.608 4.608 6 H 0.059 0.941 7 C 0.032 3.968 8 N -0.883 5.883 9 Si 1.073 2.927 10 H -0.285 1.285 11 H -0.285 1.285 12 H -0.282 1.282 13 N -0.651 5.651 14 C 0.568 3.432 15 N -0.549 5.549 16 C 0.225 3.775 17 C -0.298 4.298 18 Br -0.055 7.055 19 C 0.227 3.773 20 N -0.580 5.580 21 H 0.041 0.959 22 H 0.058 0.942 23 H 0.029 0.971 24 H 0.062 0.938 25 H 0.044 0.956 26 H 0.277 0.723 27 H 0.401 0.599 28 H 0.163 0.837 29 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.585 0.425 4.834 13.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.157 4.157 3 C 0.147 3.853 4 H 0.080 0.920 5 C -0.646 4.646 6 H 0.077 0.923 7 C -0.178 4.178 8 N -0.515 5.515 9 Si 0.900 3.100 10 H -0.212 1.212 11 H -0.210 1.210 12 H -0.207 1.207 13 N -0.280 5.280 14 C 0.212 3.788 15 N -0.273 5.273 16 C 0.051 3.949 17 C -0.388 4.388 18 Br 0.027 6.973 19 C 0.054 3.946 20 N -0.305 5.305 21 H 0.060 0.940 22 H 0.077 0.923 23 H 0.048 0.952 24 H 0.081 0.919 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.238 0.762 28 H 0.180 0.820 29 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -10.776 1.004 4.024 11.546 hybrid contribution -1.620 -0.574 1.020 1.999 sum -12.396 0.430 5.045 13.390 Atomic orbital electron populations 1.21839 0.97169 0.98602 1.01810 1.21834 0.94191 0.98937 1.00702 1.19158 0.95084 0.88707 0.82373 0.92031 1.22166 0.91160 1.06031 1.45270 0.92262 1.26090 1.07292 0.91733 0.92639 1.70732 1.10162 1.27166 1.43475 0.83485 0.73513 0.75815 0.77173 1.21192 1.21033 1.20725 1.47146 1.08412 1.53473 1.18933 1.20152 0.88500 0.86057 0.84080 1.68358 1.03642 1.24478 1.30790 1.22871 0.91698 0.86041 0.94242 1.22894 0.96369 1.17510 1.02020 1.96558 1.20816 1.81716 1.98198 1.22756 0.86386 0.88839 0.96602 1.68177 1.19732 1.17605 1.24949 0.94048 0.92299 0.95190 0.91927 0.93694 0.91097 0.76163 0.81959 0.82070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 8.45 37.16 0.31 -2.23 15 2 C -0.12 -2.42 5.58 -26.73 -0.15 -2.57 15 3 C 0.25 5.78 1.82 -69.08 -0.13 5.65 15 4 H 0.06 1.61 6.28 -51.93 -0.33 1.28 15 5 C -0.61 -15.58 8.49 -34.44 -0.29 -15.88 15 6 H 0.06 1.50 7.82 -52.49 -0.41 1.09 15 7 C 0.03 0.86 5.45 -17.82 -0.10 0.76 15 8 N -0.88 -25.24 13.63 55.43 0.76 -24.48 15 9 Si 1.07 23.47 29.91 -169.99 -5.08 18.38 15 10 H -0.29 -6.08 7.11 56.52 0.40 -5.68 15 11 H -0.28 -5.90 7.11 56.52 0.40 -5.50 15 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 13 N -0.65 -14.46 5.16 -56.92 -0.29 -14.75 15 14 C 0.57 11.90 7.02 -322.78 -2.27 9.63 15 15 N -0.55 -10.85 6.39 -13.91 -0.09 -10.94 15 16 C 0.22 3.69 11.08 -17.19 -0.19 3.50 15 17 C -0.30 -4.53 6.27 -39.26 -0.25 -4.77 15 18 Br -0.06 -0.68 33.76 -68.01 -2.30 -2.97 15 19 C 0.23 3.63 11.08 -17.20 -0.19 3.44 15 20 N -0.58 -11.25 10.46 -13.91 -0.15 -11.40 15 21 H 0.04 0.81 5.58 -51.93 -0.29 0.52 15 22 H 0.06 1.11 7.71 -51.93 -0.40 0.71 15 23 H 0.03 0.49 8.14 -51.93 -0.42 0.07 15 24 H 0.06 1.27 8.14 -51.93 -0.42 0.85 15 25 H 0.04 0.91 8.14 -51.93 -0.42 0.48 15 26 H 0.28 8.09 6.77 -40.82 -0.28 7.81 15 27 H 0.40 8.86 8.71 -40.82 -0.36 8.51 15 28 H 0.16 2.19 8.06 -52.49 -0.42 1.76 15 29 H 0.16 2.06 8.06 -52.49 -0.42 1.64 15 LS Contribution 269.28 15.07 4.06 4.06 Total: -1.00 -27.52 269.28 -9.31 -36.83 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -2.97 Total: 7.73 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -3.24 Total: -2.46 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: 0.23 Total: -61.57 kcal Atomic # 14 Polarization: 23.47 SS G_CDS: -5.08 Total: 18.38 kcal Atomic # 35 Polarization: -0.68 SS G_CDS: -2.30 Total: -2.97 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.52 -9.31 -36.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273843022.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.954 kcal (2) G-P(sol) polarization free energy of solvation -27.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds