Wall clock time and date at job start Fri Apr 10 2020 17:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37969 * 120.07419 * 2 1 4 4 C 1.38345 * 120.14391 * 180.02562 * 3 2 1 5 5 S 1.76198 * 119.84510 * 180.02562 * 4 3 2 6 6 O 1.42102 * 106.40569 * 203.54017 * 5 4 3 7 7 O 1.42099 * 106.40196 * 336.45968 * 5 4 3 8 8 N 1.65597 * 107.21923 * 90.00078 * 5 4 3 9 9 C 1.36936 * 119.99969 * 64.99817 * 8 5 4 10 10 H 1.07994 * 120.00334 * 0.02562 * 9 8 5 11 11 C 1.38816 * 119.99935 * 180.02562 * 9 8 5 12 12 N 1.31621 * 120.00214 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99911 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47447 * 59.99637 * 13 11 9 15 15 H 1.48502 * 109.47122 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46900 * 299.99760 * 13 11 9 17 17 C 1.38389 * 120.30757 * 359.70274 * 4 3 2 18 18 C 1.37924 * 120.14853 * 0.55828 * 17 4 3 19 19 C 1.39609 * 120.07258 * 179.97438 * 2 1 3 20 20 C 1.47723 * 120.15311 * 0.03713 * 19 2 1 21 21 O 1.21475 * 119.99902 * 353.75353 * 20 19 2 22 22 O 1.34708 * 119.99960 * 173.74992 * 20 19 2 23 23 H 1.08996 * 109.46975 * 263.44566 * 1 2 3 24 24 H 1.09001 * 109.46927 * 23.43918 * 1 2 3 25 25 H 1.08997 * 109.47202 * 143.43690 * 1 2 3 26 26 H 1.07994 * 119.92759 * 359.97438 * 3 2 1 27 27 H 0.96998 * 120.00481 * 244.99927 * 8 5 4 28 28 H 0.96994 * 120.00172 * 180.02562 * 12 11 9 29 29 H 1.08000 * 119.93064 * 180.29286 * 17 4 3 30 30 H 1.07996 * 120.07777 * 179.74864 * 18 17 4 31 31 H 0.96704 * 116.99379 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5819 1.1956 -0.0005 5 16 4.4569 2.7250 0.0002 6 8 5.7407 2.4531 -0.5450 7 8 3.5712 3.6942 -0.5433 8 7 4.7010 3.1494 1.5821 9 6 5.4971 2.3755 2.3836 10 1 5.9661 1.4886 1.9840 11 6 5.7012 2.7310 3.7099 12 7 5.1292 3.8117 4.1971 13 14 6.7878 1.6757 4.8030 14 1 8.1575 1.6182 4.2321 15 1 6.8428 2.2664 6.1644 16 1 6.2263 0.3032 4.8819 17 6 4.2817 0.0018 0.0051 18 6 3.6031 -1.1990 -0.0003 19 6 2.2066 -1.2082 0.0005 20 6 1.4731 -2.4904 0.0003 21 8 0.2637 -2.4982 0.1141 22 8 2.1453 -3.6509 -0.1262 23 1 -0.3633 -0.1173 1.0209 24 1 -0.3633 0.9429 -0.4088 25 1 -0.3633 -0.8254 -0.6122 26 1 1.6585 2.1292 -0.0004 27 1 4.2800 3.9462 1.9410 28 1 5.2722 4.0603 5.1237 29 1 5.3617 0.0102 0.0095 30 1 4.1504 -2.1300 0.0000 31 1 1.6219 -4.4641 -0.1213 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304589473.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:29:40 Heat of formation + Delta-G solvation = -163.074165 kcal Electronic energy + Delta-G solvation = -20215.644653 eV Core-core repulsion = 16781.129464 eV Total energy + Delta-G solvation = -3434.515189 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.055 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.68900 -39.79842 -38.08358 -37.24807 -36.71593 -36.46968 -33.85113 -32.85019 -32.69473 -28.35109 -26.42696 -25.85513 -23.39929 -22.34283 -20.22251 -20.00932 -19.25024 -18.60723 -18.40263 -17.86692 -16.96398 -16.77045 -16.32809 -16.01036 -15.59707 -15.30355 -14.85927 -14.67820 -14.29460 -13.95073 -13.81109 -13.40837 -13.27718 -13.08744 -13.00777 -12.98157 -12.84187 -12.57313 -12.37175 -12.30430 -12.16234 -11.85467 -11.81219 -11.21444 -10.53881 -10.16063 -9.91618 -8.31404 -5.87535 -0.83847 -0.28221 0.17586 1.24473 1.50554 1.54140 1.60023 1.91906 2.25196 2.41857 2.67243 2.94606 3.22063 3.43820 3.66594 3.73639 4.02338 4.17250 4.25904 4.41477 4.64974 4.72586 4.79289 4.91533 5.04008 5.06972 5.11488 5.28835 5.53210 5.61782 5.66724 6.74652 6.89932 6.96047 7.32149 8.86510 Molecular weight = 285.05amu Principal moments of inertia in cm(-1) A = 0.016647 B = 0.006025 C = 0.005171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.602722 B = 4646.008778 C = 5413.215130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.049 4.049 3 C -0.051 4.051 4 C -0.635 4.635 5 S 2.665 3.335 6 O -0.987 6.987 7 O -1.007 7.007 8 N -0.970 5.970 9 C -0.311 4.311 10 H 0.113 0.887 11 C -0.016 4.016 12 N -0.926 5.926 13 Si 0.980 3.020 14 H -0.265 1.265 15 H -0.284 1.284 16 H -0.262 1.262 17 C -0.054 4.054 18 C -0.071 4.071 19 C -0.105 4.105 20 C 0.535 3.465 21 O -0.523 6.523 22 O -0.499 6.499 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.150 0.850 27 H 0.407 0.593 28 H 0.272 0.728 29 H 0.153 0.847 30 H 0.174 0.826 31 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.719 -13.189 -5.736 15.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.050 4.050 3 C -0.070 4.070 4 C -0.720 4.720 5 S 2.757 3.243 6 O -0.978 6.978 7 O -0.997 6.997 8 N -0.723 5.723 9 C -0.446 4.446 10 H 0.130 0.870 11 C -0.218 4.218 12 N -0.568 5.568 13 Si 0.803 3.197 14 H -0.190 1.190 15 H -0.210 1.210 16 H -0.186 1.186 17 C -0.073 4.073 18 C -0.090 4.090 19 C -0.106 4.106 20 C 0.380 3.620 21 O -0.414 6.414 22 O -0.313 6.313 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.110 0.890 26 H 0.167 0.833 27 H 0.242 0.758 28 H 0.082 0.918 29 H 0.170 0.830 30 H 0.191 0.809 31 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges -5.510 -12.474 -6.443 15.083 hybrid contribution -0.406 -0.747 1.175 1.450 sum -5.916 -13.222 -5.269 15.413 Atomic orbital electron populations 1.21131 0.88173 1.04240 1.03910 1.20343 0.98050 0.91168 0.95485 1.20920 0.91975 0.99146 0.94966 1.31728 1.06763 1.22279 1.11255 1.03304 0.73452 0.73950 0.73632 1.93474 1.40028 1.86089 1.78195 1.93437 1.66891 1.60532 1.78845 1.51363 1.57336 1.33232 1.30345 1.19510 1.22840 1.08913 0.93357 0.86961 1.25999 0.99624 0.97955 0.98253 1.69783 1.45196 1.25498 1.16327 0.85179 0.78878 0.78491 0.77114 1.19027 1.20986 1.18622 1.21148 1.01320 0.90890 0.93932 1.21804 0.92611 0.99542 0.95037 1.19348 0.94273 0.90639 1.06382 1.20563 0.84826 0.84614 0.71958 1.90848 1.15829 1.88010 1.46727 1.84519 1.45293 1.17224 1.84310 0.90178 0.90185 0.89027 0.83276 0.75773 0.91835 0.82952 0.80901 0.70075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.93 8.73 71.24 0.62 -2.31 16 2 C -0.05 -1.45 5.92 -19.60 -0.12 -1.57 16 3 C -0.05 -1.69 9.13 22.23 0.20 -1.49 16 4 C -0.64 -23.03 5.90 22.33 0.13 -22.90 16 5 S 2.67 112.66 5.69 -56.49 -0.32 112.34 16 6 O -0.99 -45.38 16.98 -128.00 -2.17 -47.55 16 7 O -1.01 -45.05 17.27 -128.00 -2.21 -47.26 16 8 N -0.97 -45.93 5.75 -54.27 -0.31 -46.25 16 9 C -0.31 -15.39 9.63 84.03 0.81 -14.58 16 10 H 0.11 5.13 7.82 -2.91 -0.02 5.10 16 11 C -0.02 -0.82 5.50 84.86 0.47 -0.35 16 12 N -0.93 -49.66 13.06 21.65 0.28 -49.38 16 13 Si 0.98 39.54 29.55 68.60 2.03 41.56 16 14 H -0.27 -10.38 7.11 99.48 0.71 -9.68 16 15 H -0.28 -11.45 7.11 99.48 0.71 -10.75 16 16 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 17 C -0.05 -1.72 9.50 22.23 0.21 -1.51 16 18 C -0.07 -1.89 9.62 22.54 0.22 -1.67 16 19 C -0.11 -2.87 5.87 -20.10 -0.12 -2.99 16 20 C 0.54 12.36 8.20 70.33 0.58 12.94 16 21 O -0.52 -13.76 14.13 19.92 0.28 -13.48 16 22 O -0.50 -7.68 12.70 -56.18 -0.71 -8.39 16 23 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.08 1.72 8.04 -2.39 -0.02 1.70 16 25 H 0.09 2.26 5.86 -2.39 -0.01 2.25 16 26 H 0.15 4.69 7.60 -2.91 -0.02 4.66 16 27 H 0.41 19.97 8.02 -96.75 -0.78 19.20 16 28 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 29 H 0.15 4.61 7.61 -2.91 -0.02 4.58 16 30 H 0.17 3.39 7.63 -2.91 -0.02 3.37 16 31 H 0.44 2.31 9.11 -74.05 -0.67 1.63 16 Total: -1.00 -66.57 292.60 -0.38 -66.94 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: -0.24 Total: 27.87 kcal Atomic # 6 Polarization: -39.43 SS G_CDS: 3.00 Total: -36.42 kcal Atomic # 7 Polarization: -95.59 SS G_CDS: -0.03 Total: -95.62 kcal Atomic # 8 Polarization: -111.86 SS G_CDS: -4.82 Total: -116.68 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.56 kcal Atomic # 16 Polarization: 112.66 SS G_CDS: -0.32 Total: 112.34 kcal Total: -66.57 -0.38 -66.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304589473.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.129 kcal (2) G-P(sol) polarization free energy of solvation -66.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds