Wall clock time and date at job start Fri Apr 10 2020 17:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46501 * 109.47357 * 2 1 4 4 C 1.46504 * 119.99994 * 89.99329 * 3 2 1 5 5 C 1.50699 * 109.47481 * 270.00429 * 4 3 2 6 6 H 1.08006 * 119.99650 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00165 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99714 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00178 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46907 * 90.00020 * 9 7 5 11 11 H 1.48496 * 109.47435 * 209.99820 * 9 7 5 12 12 H 1.48501 * 109.47286 * 330.00247 * 9 7 5 13 13 C 1.34771 * 119.99893 * 270.00149 * 3 2 1 14 14 O 1.21280 * 119.99895 * 179.97438 * 13 3 2 15 15 C 1.50704 * 120.00216 * 359.97438 * 13 3 2 16 16 N 1.46891 * 109.47572 * 186.04201 * 15 13 3 17 17 C 1.47898 * 111.00445 * 176.63903 * 16 15 13 18 18 C 1.53986 * 107.06043 * 214.15657 * 17 16 15 19 19 C 1.54599 * 105.14158 * 1.22215 * 18 17 16 20 20 H 1.08993 * 110.72728 * 263.59650 * 19 18 17 21 21 C 1.53002 * 110.72388 * 140.49265 * 19 18 17 22 22 H 1.09003 * 109.47050 * 301.45490 * 21 19 18 23 23 C 1.52998 * 109.47061 * 61.45663 * 21 19 18 24 24 O 1.42898 * 109.47348 * 181.45663 * 21 19 18 25 25 C 1.48537 * 110.99900 * 59.23901 * 16 15 13 26 26 H 1.08998 * 109.46541 * 59.99858 * 1 2 3 27 27 H 1.08992 * 109.46619 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46968 * 300.00103 * 1 2 3 29 29 H 1.08996 * 109.47624 * 239.99609 * 2 1 3 30 30 H 1.09004 * 109.46537 * 119.99676 * 2 1 3 31 31 H 1.08998 * 109.46836 * 30.00299 * 4 3 2 32 32 H 1.09001 * 109.46951 * 150.00061 * 4 3 2 33 33 H 0.97001 * 119.99993 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.47119 * 306.04779 * 15 13 3 35 35 H 1.09001 * 109.46697 * 66.03804 * 15 13 3 36 36 H 1.08999 * 109.91373 * 333.50699 * 17 16 15 37 37 H 1.08995 * 109.91710 * 94.60545 * 17 16 15 38 38 H 1.09003 * 110.31291 * 120.14085 * 18 17 16 39 39 H 1.09006 * 110.31363 * 242.30777 * 18 17 16 40 40 H 1.09003 * 109.47330 * 59.99998 * 23 21 19 41 41 H 1.09007 * 109.47031 * 180.02562 * 23 21 19 42 42 H 1.08998 * 109.47324 * 299.99654 * 23 21 19 43 43 H 0.96705 * 114.00032 * 300.00299 * 24 21 19 44 44 H 1.08994 * 110.67155 * 278.15953 * 25 16 15 45 45 H 1.09003 * 110.66341 * 41.28922 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2625 2.0719 1.2688 5 6 1.0067 2.7823 1.7038 6 1 0.1159 2.7254 1.0957 7 6 0.9952 3.5057 2.8774 8 7 2.0801 3.5754 3.6176 9 14 -0.5612 4.3869 3.4162 10 1 -1.3782 3.4775 4.2595 11 1 -0.1999 5.5961 4.1987 12 1 -1.3431 4.7874 2.2189 13 6 2.2431 2.0165 -1.1672 14 8 2.6469 3.1601 -1.1672 15 6 1.9924 1.3059 -2.4723 16 7 2.4457 2.1510 -3.5850 17 6 2.2891 1.4525 -4.8792 18 6 3.4559 1.9007 -5.7785 19 6 4.2918 2.8645 -4.9052 20 1 4.0183 3.9006 -5.1041 21 6 5.7881 2.6472 -5.1391 22 1 6.0460 1.6141 -4.9061 23 6 6.1231 2.9387 -6.6032 24 8 6.5347 3.5263 -4.2955 25 6 3.8937 2.4592 -3.4637 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3632 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8935 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.5505 1.3452 2.0284 32 1 3.0645 2.7985 1.1384 33 1 2.0721 4.0846 4.4431 34 1 2.5410 0.3641 -2.4845 35 1 0.9260 1.1066 -2.5784 36 1 2.3311 0.3741 -4.7264 37 1 1.3381 1.7259 -5.3360 38 1 4.0571 1.0411 -6.0749 39 1 3.0773 2.4201 -6.6589 40 1 5.8652 3.9719 -6.8362 41 1 7.1891 2.7835 -6.7699 42 1 5.5537 2.2681 -7.2467 43 1 6.3553 4.4643 -4.4479 44 1 4.0543 3.2871 -2.7732 45 1 4.4492 1.5774 -3.1446 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305868631.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:29:45 Heat of formation + Delta-G solvation = -110.332245 kcal Electronic energy + Delta-G solvation = -23582.287680 eV Core-core repulsion = 20212.524627 eV Total energy + Delta-G solvation = -3369.763053 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.14939 -39.88101 -37.80974 -36.87450 -34.89302 -33.79830 -31.58732 -31.01751 -29.71368 -29.32745 -27.20372 -24.63229 -24.11076 -23.71758 -22.13815 -21.21290 -19.84898 -18.70149 -18.10025 -17.78364 -17.08545 -16.91100 -16.47765 -16.26606 -15.79005 -15.55720 -14.85474 -14.74645 -14.57672 -14.37285 -14.12103 -13.94165 -13.72760 -13.60823 -13.39002 -13.14524 -13.00716 -12.74916 -12.65269 -12.54106 -12.52030 -12.29681 -12.11337 -12.04613 -11.83998 -11.74965 -11.60161 -11.38055 -10.81064 -10.62583 -10.47379 -9.44222 -9.31574 -8.20995 -6.34371 1.34855 1.38303 1.48468 1.85454 2.25569 2.41637 3.03296 3.08396 3.36770 3.66886 3.68827 3.83077 3.97150 4.05457 4.21750 4.28175 4.32241 4.37369 4.37716 4.43689 4.51812 4.63823 4.70040 4.75881 4.92641 4.93060 4.95130 5.01838 5.03449 5.05360 5.10305 5.22807 5.25417 5.30939 5.38947 5.50422 5.61497 5.85207 5.90803 6.03760 6.08873 6.72928 6.82923 6.83343 7.30887 7.54005 8.86329 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.021527 B = 0.004015 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.352083 B = 6972.751686 C = 7594.564590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.103 3.897 3 N -0.606 5.606 4 C 0.263 3.737 5 C -0.532 4.532 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.931 5.931 9 Si 0.965 3.035 10 H -0.263 1.263 11 H -0.282 1.282 12 H -0.274 1.274 13 C 0.494 3.506 14 O -0.579 6.579 15 C 0.044 3.956 16 N -0.526 5.526 17 C 0.032 3.968 18 C -0.113 4.113 19 C -0.116 4.116 20 H 0.078 0.922 21 C 0.111 3.889 22 H 0.091 0.909 23 C -0.175 4.175 24 O -0.586 6.586 25 C 0.051 3.949 26 H 0.052 0.948 27 H 0.093 0.907 28 H 0.038 0.962 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.021 0.979 32 H -0.007 1.007 33 H 0.266 0.734 34 H 0.084 0.916 35 H 0.119 0.881 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.084 0.916 43 H 0.386 0.614 44 H 0.055 0.945 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.853 -9.605 -21.510 23.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.019 4.019 3 N -0.338 5.338 4 C 0.142 3.858 5 C -0.571 4.571 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.571 5.571 9 Si 0.790 3.210 10 H -0.188 1.188 11 H -0.207 1.207 12 H -0.199 1.199 13 C 0.282 3.718 14 O -0.459 6.459 15 C -0.087 4.087 16 N -0.251 5.251 17 C -0.095 4.095 18 C -0.151 4.151 19 C -0.136 4.136 20 H 0.097 0.903 21 C 0.052 3.948 22 H 0.109 0.891 23 C -0.232 4.232 24 O -0.394 6.394 25 C -0.077 4.077 26 H 0.071 0.929 27 H 0.112 0.888 28 H 0.057 0.943 29 H 0.120 0.880 30 H 0.094 0.906 31 H 0.038 0.962 32 H 0.011 0.989 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.136 0.864 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.102 0.898 43 H 0.235 0.765 44 H 0.074 0.926 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 2.035 -9.059 -21.086 23.040 hybrid contribution -0.364 0.646 0.975 1.224 sum 1.671 -8.413 -20.111 21.864 Atomic orbital electron populations 1.22150 0.95319 1.02885 1.01691 1.21748 0.95393 0.81053 1.03671 1.48306 1.64301 1.15047 1.06180 1.18702 0.95394 0.91432 0.80312 1.21685 0.97827 1.31324 1.06221 0.92747 1.25855 0.99826 0.97038 0.96607 1.70060 1.29570 1.42602 1.14851 0.85449 0.79174 0.78226 0.78170 1.18752 1.20734 1.19881 1.21169 0.77580 0.86693 0.86360 1.90619 1.47548 1.19986 1.87763 1.22204 1.03793 0.94684 0.87976 1.64503 1.17820 1.40989 1.01791 1.23035 1.00497 0.97357 0.88636 1.22410 0.95449 0.99249 0.97945 1.22785 0.96050 1.00956 0.93762 0.90313 1.21999 0.88079 0.94182 0.90565 0.89069 1.22430 1.02536 1.03203 0.95071 1.86567 1.67775 1.21316 1.63745 1.23102 0.87119 0.99489 0.97982 0.92931 0.88842 0.94261 0.87988 0.90648 0.96153 0.98905 0.92538 0.89862 0.86362 0.92010 0.89406 0.89282 0.89018 0.91685 0.91885 0.89757 0.76488 0.92605 0.95041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.66 10.24 71.98 0.74 -3.92 16 2 C 0.10 3.20 6.00 86.38 0.52 3.71 16 3 N -0.61 -26.49 2.46 -826.14 -2.03 -28.52 16 4 C 0.26 14.66 5.20 85.63 0.45 15.11 16 5 C -0.53 -31.34 8.92 25.60 0.23 -31.12 16 6 H 0.05 3.18 7.42 -2.91 -0.02 3.16 16 7 C 0.01 0.31 5.46 84.65 0.46 0.77 16 8 N -0.93 -57.77 13.29 21.45 0.28 -57.48 16 9 Si 0.97 46.15 29.54 68.60 2.03 48.17 16 10 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 13 C 0.49 21.51 7.31 87.66 0.64 22.15 16 14 O -0.58 -31.52 13.87 -3.03 -0.04 -31.56 16 15 C 0.04 1.33 4.03 85.56 0.35 1.68 16 16 N -0.53 -15.64 5.11 -887.60 -4.54 -20.18 16 17 C 0.03 0.61 6.70 86.44 0.58 1.19 16 18 C -0.11 -1.72 5.51 31.47 0.17 -1.55 16 19 C -0.12 -2.49 2.81 -9.59 -0.03 -2.52 16 20 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 21 C 0.11 2.12 3.00 30.59 0.09 2.21 16 22 H 0.09 1.78 8.13 -2.39 -0.02 1.76 16 23 C -0.18 -2.24 9.32 71.98 0.67 -1.57 16 24 O -0.59 -14.34 13.16 -148.98 -1.96 -16.30 16 25 C 0.05 1.59 4.86 86.65 0.42 2.01 16 26 H 0.05 1.46 7.41 -2.39 -0.02 1.44 16 27 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.04 1.42 7.26 -2.39 -0.02 1.40 16 29 H 0.10 2.29 6.28 -2.39 -0.01 2.27 16 30 H 0.08 2.31 7.89 -2.39 -0.02 2.29 16 31 H 0.02 1.15 7.89 -2.39 -0.02 1.14 16 32 H -0.01 -0.46 7.42 -2.39 -0.02 -0.48 16 33 H 0.27 15.48 8.31 -92.71 -0.77 14.70 16 34 H 0.08 2.00 6.92 -2.39 -0.02 1.98 16 35 H 0.12 3.08 7.41 -2.39 -0.02 3.07 16 36 H 0.06 0.96 7.68 -2.39 -0.02 0.94 16 37 H 0.09 1.53 8.14 -2.39 -0.02 1.52 16 38 H 0.09 1.02 7.61 -2.39 -0.02 1.00 16 39 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.08 0.80 7.16 -2.39 -0.02 0.78 16 43 H 0.39 7.07 9.05 -74.05 -0.67 6.40 16 44 H 0.06 2.31 6.43 -2.39 -0.02 2.30 16 45 H 0.03 0.98 7.91 -2.39 -0.02 0.96 16 Total: -1.00 -79.93 355.14 -0.67 -80.60 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.30 Total: 17.12 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 5.29 Total: 8.15 kcal Atomic # 7 Polarization: -99.90 SS G_CDS: -6.28 Total: -106.18 kcal Atomic # 8 Polarization: -45.86 SS G_CDS: -2.00 Total: -47.86 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.17 kcal Total: -79.93 -0.67 -80.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305868631.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.733 kcal (2) G-P(sol) polarization free energy of solvation -79.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds