Wall clock time and date at job start Fri Apr 10 2020 17:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46957 * 111.00263 * 2 1 4 4 C 1.53053 * 109.36513 * 183.18574 * 3 2 1 5 5 N 1.46955 * 109.36399 * 301.60244 * 4 3 2 6 6 C 1.46903 * 110.99806 * 183.18787 * 5 4 3 7 7 C 1.46957 * 110.88329 * 59.31824 * 5 4 3 8 8 H 1.09001 * 109.48532 * 60.65136 * 7 5 4 9 9 C 1.53002 * 109.50780 * 180.69815 * 7 5 4 10 10 N 1.46503 * 109.46987 * 55.45971 * 9 7 5 11 11 C 1.37338 * 119.99931 * 184.88274 * 10 9 7 12 12 O 1.35090 * 119.99868 * 0.02562 * 11 10 9 13 13 N 1.30095 * 119.99522 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99613 * 172.15213 * 13 11 10 15 15 C 1.53004 * 109.46836 * 113.72816 * 14 13 11 16 16 C 1.50704 * 109.46772 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00374 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99683 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00635 * 359.97438 * 18 16 15 20 20 Si 1.86810 * 119.99964 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46992 * 89.99842 * 20 18 16 22 22 H 1.48503 * 109.46777 * 209.99915 * 20 18 16 23 23 H 1.48498 * 109.46619 * 329.99847 * 20 18 16 24 24 C 1.46963 * 110.99856 * 123.80328 * 2 1 3 25 25 H 1.08997 * 109.47453 * 296.20148 * 1 2 3 26 26 H 1.09002 * 109.47308 * 56.19802 * 1 2 3 27 27 H 1.08997 * 109.47720 * 176.20033 * 1 2 3 28 28 H 1.09001 * 109.48783 * 303.15455 * 3 2 1 29 29 H 1.08995 * 109.48692 * 63.20350 * 3 2 1 30 30 H 1.09002 * 109.48408 * 61.56641 * 4 3 2 31 31 H 1.08992 * 109.48887 * 181.62824 * 4 3 2 32 32 H 1.09008 * 109.47071 * 299.99387 * 6 5 4 33 33 H 1.08999 * 109.47058 * 59.99540 * 6 5 4 34 34 H 1.09002 * 109.47499 * 179.97438 * 6 5 4 35 35 H 1.08998 * 109.46792 * 175.46340 * 9 7 5 36 36 H 1.09004 * 109.47244 * 295.46032 * 9 7 5 37 37 H 0.97002 * 119.99703 * 4.89317 * 10 9 7 38 38 H 0.96707 * 113.99469 * 184.47442 * 12 11 10 39 39 H 1.09003 * 109.47390 * 233.72604 * 14 13 11 40 40 H 1.08997 * 109.47402 * 353.72888 * 14 13 11 41 41 H 1.08996 * 109.47307 * 299.99943 * 15 14 13 42 42 H 1.09001 * 109.47207 * 60.00357 * 15 14 13 43 43 H 0.96998 * 120.00245 * 179.97438 * 19 18 16 44 44 H 1.08994 * 109.49094 * 56.84376 * 24 2 1 45 45 H 1.09003 * 109.50429 * 296.78270 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5235 1.3290 -0.0802 5 7 4.0500 0.5657 1.0598 6 6 5.5190 0.5657 1.0598 7 6 3.5233 -0.8062 1.0598 8 1 3.8253 -1.3116 0.1425 9 6 4.0768 -1.5660 2.2670 10 7 3.7625 -0.8293 3.4937 11 6 4.2470 -1.2681 4.7015 12 8 5.0138 -2.3788 4.7584 13 7 3.9674 -0.6141 5.7908 14 6 4.3360 -1.1713 7.0947 15 6 5.4037 -0.2880 7.7433 16 6 5.7824 -0.8608 9.0848 17 1 5.3092 -1.7646 9.4392 18 6 6.7330 -0.2310 9.8598 19 7 7.3097 0.8694 9.4282 20 14 7.2030 -0.9413 11.5224 21 1 8.3303 -1.8930 11.3533 22 1 7.6152 0.1580 12.4317 23 1 6.0368 -1.6536 12.1038 24 6 1.9956 -0.7633 1.1401 25 1 -0.3634 0.4537 0.9220 26 1 -0.3634 0.5717 -0.8540 27 1 -0.3634 -1.0253 -0.0681 28 1 1.6013 1.9128 -0.8603 29 1 1.6935 1.8774 0.9172 30 1 3.8253 0.8478 -1.0106 31 1 3.9178 2.3447 -0.0512 32 1 5.8824 0.1118 0.1377 33 1 5.8824 1.5911 1.1279 34 1 5.8824 -0.0057 1.9141 35 1 3.6239 -2.5564 2.3118 36 1 5.1580 -1.6650 2.1696 37 1 3.2120 -0.0316 3.4528 38 1 5.2508 -2.6476 5.6566 39 1 3.4556 -1.2076 7.7364 40 1 4.7300 -2.1787 6.9611 41 1 6.2841 -0.2517 7.1017 42 1 5.0098 0.7195 7.8770 43 1 7.9782 1.3127 9.9737 44 1 1.6013 -1.7790 1.1110 45 1 1.6937 -0.2825 2.0706 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330829835.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:30:02 Heat of formation + Delta-G solvation = 3.926997 kcal Electronic energy + Delta-G solvation = -22936.503116 eV Core-core repulsion = 19603.987467 eV Total energy + Delta-G solvation = -3332.515650 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.195 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.04970 -38.87307 -36.17504 -34.79345 -34.03990 -32.51298 -31.37490 -29.57250 -28.98540 -26.44656 -25.54974 -24.40995 -23.47413 -21.91704 -21.68037 -20.09242 -19.72662 -17.30175 -16.66792 -16.34473 -16.12336 -15.95233 -15.37830 -15.08548 -14.76187 -14.59114 -14.50183 -14.34874 -14.08460 -13.19497 -13.00019 -12.77125 -12.69187 -12.46412 -12.36714 -12.19691 -12.04418 -11.72441 -11.54300 -11.29928 -11.08182 -10.96586 -10.82350 -10.68519 -10.16815 -9.91150 -9.45846 -9.17315 -8.73796 -8.58132 -8.53839 -8.30752 -7.37928 -5.96637 -4.00515 3.10778 3.30485 3.33221 3.39468 3.43128 3.57389 3.64444 4.38749 4.47191 4.53898 4.58898 4.74035 4.91353 5.00075 5.04871 5.18144 5.21281 5.29415 5.38427 5.39032 5.41778 5.48976 5.52730 5.56008 5.58499 5.68875 5.75278 5.88687 5.95710 6.18457 6.60415 6.62842 6.63589 6.81819 6.84759 6.97762 7.14649 7.37988 7.72684 7.88823 7.94035 8.09884 8.43681 9.06298 9.15659 9.63436 11.14325 Molecular weight = 284.20amu Principal moments of inertia in cm(-1) A = 0.029880 B = 0.002900 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.856140 B = 9651.390769 C = 9865.503205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.546 5.546 3 C 0.054 3.946 4 C 0.058 3.942 5 N -0.536 5.536 6 C 0.022 3.978 7 C 0.076 3.924 8 H 0.064 0.936 9 C 0.139 3.861 10 N -0.693 5.693 11 C 0.549 3.451 12 O -0.543 6.543 13 N -0.645 5.645 14 C 0.077 3.923 15 C 0.029 3.971 16 C -0.525 4.525 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.892 5.892 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.060 3.940 25 H 0.028 0.972 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.046 0.954 30 H 0.041 0.959 31 H 0.082 0.918 32 H 0.025 0.975 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.425 0.575 38 H 0.416 0.584 39 H 0.068 0.932 40 H 0.012 0.988 41 H 0.011 0.989 42 H 0.025 0.975 43 H 0.260 0.740 44 H 0.082 0.918 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.131 -2.761 -23.114 25.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.271 5.271 3 C -0.074 4.074 4 C -0.070 4.070 5 N -0.261 5.261 6 C -0.126 4.126 7 C -0.034 4.034 8 H 0.082 0.918 9 C 0.013 3.987 10 N -0.345 5.345 11 C 0.234 3.766 12 O -0.344 6.344 13 N -0.396 5.396 14 C -0.052 4.052 15 C -0.009 4.009 16 C -0.563 4.563 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.531 5.531 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.068 4.068 25 H 0.047 0.953 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.043 0.957 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.265 0.735 38 H 0.277 0.723 39 H 0.086 0.914 40 H 0.030 0.970 41 H 0.029 0.971 42 H 0.044 0.956 43 H 0.070 0.930 44 H 0.100 0.900 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.227 -2.189 -23.450 25.676 hybrid contribution 0.790 -0.800 1.530 1.898 sum -9.437 -2.989 -21.920 24.052 Atomic orbital electron populations 1.22344 0.86974 1.02321 1.00700 1.62167 1.08017 1.14003 1.42888 1.22204 0.94587 0.89356 1.01297 1.22162 0.94300 0.98718 0.91850 1.62074 1.08468 1.12892 1.42698 1.22436 0.86482 1.02811 1.00838 1.21951 0.94556 0.89450 0.97393 0.91816 1.21284 1.00312 0.94355 0.82741 1.43299 1.57837 1.32417 1.00931 1.20205 0.86962 0.81220 0.88186 1.84415 1.67146 1.44170 1.38623 1.72480 1.37178 1.32181 0.97738 1.21976 0.99792 0.95205 0.88187 1.19114 0.91972 0.95536 0.94291 1.21228 1.22002 1.10252 1.02861 0.92682 1.25021 0.96243 0.94923 0.98166 1.69987 1.27230 1.18122 1.37796 0.86589 0.78739 0.78661 0.83966 1.20709 1.21192 1.19848 1.22212 0.93520 0.98856 0.92239 0.95296 0.91385 0.91295 0.90315 0.93597 0.94039 0.90007 0.95661 0.91123 0.90399 0.91706 0.91488 0.73483 0.72283 0.91399 0.97025 0.97061 0.95610 0.92993 0.90004 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.60 60.06 0.58 0.75 16 2 N -0.55 -4.70 4.97 -242.76 -1.21 -5.91 16 3 C 0.05 0.44 5.62 -3.77 -0.02 0.42 16 4 C 0.06 0.49 5.62 -3.77 -0.02 0.47 16 5 N -0.54 -5.31 4.32 -234.73 -1.01 -6.33 16 6 C 0.02 0.22 9.24 60.07 0.56 0.77 16 7 C 0.08 0.71 2.22 -67.66 -0.15 0.56 16 8 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 9 C 0.14 1.51 4.75 -4.04 -0.02 1.49 16 10 N -0.69 -9.65 5.24 -62.53 -0.33 -9.98 16 11 C 0.55 9.66 8.77 -88.57 -0.78 8.88 16 12 O -0.54 -8.97 12.90 -16.97 -0.22 -9.19 16 13 N -0.64 -13.52 10.61 -62.52 -0.66 -14.18 16 14 C 0.08 1.73 6.14 -4.04 -0.02 1.71 16 15 C 0.03 0.78 5.30 -27.88 -0.15 0.64 16 16 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 17 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -27.59 13.29 55.43 0.74 -26.85 16 20 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 C 0.06 0.54 4.79 -3.77 -0.02 0.53 16 25 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.54 8.13 -51.93 -0.42 0.11 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.02 0.22 8.14 -51.92 -0.42 -0.20 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.89 6.14 -51.93 -0.32 0.57 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.77 6.54 -51.93 -0.34 0.43 16 37 H 0.42 6.01 7.34 -40.82 -0.30 5.71 16 38 H 0.42 6.60 5.90 45.56 0.27 6.86 16 39 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 40 H 0.01 0.24 5.43 -51.93 -0.28 -0.04 16 41 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.51 7.01 -51.93 -0.36 0.14 16 LS Contribution 355.33 15.07 5.35 5.35 Total: -1.00 -32.75 355.33 -10.03 -42.79 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -7.22 Total: 5.06 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -0.46 Total: 2.33 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: -2.47 Total: -63.24 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -0.22 Total: -9.19 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.75 -10.03 -42.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330829835.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.712 kcal (2) G-P(sol) polarization free energy of solvation -32.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds