Wall clock time and date at job start Fri Apr 10 2020 17:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99587 * 2 1 4 4 C 1.50701 * 109.47219 * 270.00050 * 3 2 1 5 5 H 1.07997 * 119.99632 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99874 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00124 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99895 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47080 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.47220 * 120.00014 * 8 6 4 11 11 H 1.48499 * 109.47329 * 240.00416 * 8 6 4 12 12 C 1.34773 * 120.00275 * 180.02562 * 2 1 3 13 13 O 1.21285 * 119.99876 * 179.97438 * 12 2 1 14 14 C 1.50695 * 120.00204 * 0.02562 * 12 2 1 15 15 C 1.53002 * 109.47314 * 179.97438 * 14 12 2 16 16 N 1.46896 * 109.47065 * 179.97438 * 15 14 12 17 17 C 1.47843 * 111.00436 * 295.96941 * 16 15 14 18 18 C 1.54907 * 104.79290 * 213.63453 * 17 16 15 19 19 C 1.55138 * 101.65561 * 37.07341 * 18 17 16 20 20 C 1.47445 * 110.99706 * 175.12334 * 16 15 14 21 21 H 1.09006 * 109.88960 * 242.82888 * 20 16 15 22 22 C 1.52996 * 109.88831 * 3.85759 * 20 16 15 23 23 C 1.53007 * 109.47074 * 182.47560 * 22 20 16 24 24 O 1.42894 * 109.47124 * 174.90304 * 23 22 20 25 25 H 1.09002 * 109.47384 * 269.99843 * 1 2 3 26 26 H 1.08995 * 109.47385 * 30.00388 * 1 2 3 27 27 H 1.09008 * 109.46947 * 149.99920 * 1 2 3 28 28 H 1.09001 * 109.47307 * 30.00191 * 3 2 1 29 29 H 1.09004 * 109.47080 * 149.99994 * 3 2 1 30 30 H 0.97002 * 119.99635 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.47562 * 59.99624 * 14 12 2 32 32 H 1.09002 * 109.47084 * 299.99804 * 14 12 2 33 33 H 1.09000 * 109.46782 * 59.99802 * 15 14 12 34 34 H 1.09002 * 109.46900 * 299.99935 * 15 14 12 35 35 H 1.09000 * 110.37234 * 332.46245 * 17 16 15 36 36 H 1.08995 * 110.37297 * 94.80625 * 17 16 15 37 37 H 1.09000 * 110.99380 * 278.97772 * 18 17 16 38 38 H 1.09007 * 110.98743 * 155.15873 * 18 17 16 39 39 H 1.08997 * 110.70317 * 205.96403 * 19 18 17 40 40 H 1.08997 * 110.71025 * 82.72450 * 19 18 17 41 41 H 1.08997 * 109.46908 * 302.46748 * 22 20 16 42 42 H 1.08991 * 109.47125 * 62.47625 * 22 20 16 43 43 H 1.09003 * 109.46574 * 294.90645 * 23 22 20 44 44 H 1.09003 * 109.46973 * 54.90148 * 23 22 20 45 45 H 0.96702 * 113.99762 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0980 1.0959 -2.2416 6 6 3.1258 2.8781 -1.6727 7 7 3.5530 3.6183 -0.6731 8 14 3.4377 3.4171 -3.4339 9 1 2.8607 2.4165 -4.3673 10 1 2.7995 4.7373 -3.6679 11 1 4.9003 3.5260 -3.6666 12 6 2.1389 -1.1671 -0.0005 13 8 3.3518 -1.1670 -0.0010 14 6 1.3855 -2.4723 -0.0017 15 6 2.3798 -3.6351 -0.0027 16 7 1.6454 -4.9073 -0.0032 17 6 0.8575 -5.0649 1.2378 18 6 0.8801 -6.5859 1.5302 19 6 2.3193 -6.9675 1.0946 20 6 2.5691 -6.0505 -0.1213 21 1 2.3707 -6.5937 -1.0453 22 6 4.0161 -5.5538 -0.1101 23 6 4.9641 -6.7405 -0.2949 24 8 6.3072 -6.2649 -0.4033 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 1.6083 2.0284 0.5139 29 1 3.1499 1.1385 0.5138 30 1 4.0298 4.4442 -0.8504 31 1 0.7591 -2.5295 -0.8919 32 1 0.7586 -2.5307 0.8880 33 1 3.0065 -3.5781 0.8873 34 1 3.0065 -3.5765 -0.8927 35 1 1.3230 -4.5143 2.0552 36 1 -0.1660 -4.7233 1.0833 37 1 0.1379 -7.1104 0.9283 38 1 0.7287 -6.7816 2.5918 39 1 2.3682 -8.0165 0.8026 40 1 3.0323 -6.7543 1.8909 41 1 4.1623 -4.8422 -0.9226 42 1 4.2256 -5.0664 0.8420 43 1 4.8829 -7.4074 0.5635 44 1 4.6960 -7.2819 -1.2022 45 1 6.9639 -6.9647 -0.5223 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336789022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:30:38 Heat of formation + Delta-G solvation = -84.085941 kcal Electronic energy + Delta-G solvation = -23123.693494 eV Core-core repulsion = 19755.068566 eV Total energy + Delta-G solvation = -3368.624928 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.98540 -38.70835 -36.93561 -34.78681 -33.31829 -32.51933 -32.38631 -29.49367 -27.54182 -27.15269 -25.70937 -23.96680 -23.14255 -22.21020 -21.15236 -19.31003 -18.24833 -17.53046 -16.64604 -16.48155 -16.12239 -15.49594 -15.28216 -15.18771 -15.03141 -14.46317 -14.01071 -13.85266 -13.52375 -13.06943 -12.81272 -12.55568 -12.22901 -12.13260 -12.08494 -11.78221 -11.67214 -11.35506 -11.34445 -11.13452 -11.07547 -10.99387 -10.87286 -10.79167 -10.58063 -10.50994 -10.11923 -10.08667 -9.56458 -8.82773 -8.40224 -8.34264 -7.58288 -6.00681 -4.05174 3.32659 3.39866 3.43588 3.52245 3.68091 3.98842 4.21011 4.42917 4.49130 4.54288 4.73712 4.91386 5.00696 5.11021 5.19969 5.26014 5.26899 5.30699 5.33807 5.40988 5.43965 5.54936 5.59575 5.66790 5.68779 5.81490 5.83352 5.94147 5.96242 6.00436 6.10952 6.22260 6.25894 6.28177 6.93753 7.01984 7.11070 7.45933 7.48977 7.59919 7.96233 8.27919 8.48208 8.95043 9.16290 9.60018 11.07462 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.018690 B = 0.003736 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.758552 B = 7492.829131 C = 8526.856559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.604 5.604 3 C 0.244 3.756 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.504 3.496 13 O -0.544 6.544 14 C -0.135 4.135 15 C 0.063 3.937 16 N -0.525 5.525 17 C 0.037 3.963 18 C -0.129 4.129 19 C -0.140 4.140 20 C 0.079 3.921 21 H 0.087 0.913 22 C -0.143 4.143 23 C 0.080 3.920 24 O -0.572 6.572 25 H 0.042 0.958 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.031 0.969 29 H 0.043 0.957 30 H 0.262 0.738 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.046 0.954 34 H 0.088 0.912 35 H 0.048 0.952 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.043 0.957 44 H 0.045 0.955 45 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.877 -22.688 4.058 23.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.336 5.336 3 C 0.125 3.875 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.290 3.710 13 O -0.422 6.422 14 C -0.176 4.176 15 C -0.065 4.065 16 N -0.248 5.248 17 C -0.090 4.090 18 C -0.167 4.167 19 C -0.179 4.179 20 C -0.030 4.030 21 H 0.105 0.895 22 C -0.181 4.181 23 C 0.001 3.999 24 O -0.377 6.377 25 H 0.061 0.939 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -5.788 -21.883 3.742 22.943 hybrid contribution 0.868 -0.060 -0.340 0.934 sum -4.921 -21.943 3.402 22.744 Atomic orbital electron populations 1.21628 0.81497 1.02607 1.00272 1.48156 1.06156 1.07880 1.71423 1.19281 0.92544 0.78187 0.97485 1.21487 1.36324 1.06148 0.92366 0.92406 1.24944 0.95386 0.96415 0.97441 1.69949 1.38540 1.14349 1.30651 0.86441 0.78087 0.78266 0.84629 1.19783 1.20988 1.20864 1.20318 0.88097 0.85181 0.77435 1.90673 1.13965 1.87356 1.50214 1.21645 0.99280 0.92846 1.03823 1.22116 0.94795 0.86872 1.02688 1.63758 1.23399 1.01831 1.35853 1.23119 0.99114 0.95814 0.90967 1.22692 0.96849 0.95961 1.01232 1.22930 0.97227 0.99826 0.97886 1.22345 0.90042 0.91798 0.98768 0.89525 1.22198 0.93287 0.98290 1.04296 1.22142 0.82414 0.96074 0.99246 1.86557 1.16782 1.37876 1.96446 0.93912 0.90872 0.92321 0.95097 0.93898 0.92814 0.88799 0.90010 0.93560 0.89376 0.93393 0.90056 0.90671 0.90965 0.90873 0.91249 0.89607 0.90839 0.93876 0.93710 0.77673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.37 10.24 59.85 0.61 1.98 16 2 N -0.60 -13.23 2.86 -182.95 -0.52 -13.75 16 3 C 0.24 6.59 5.16 -5.19 -0.03 6.56 16 4 C -0.52 -15.29 9.39 -34.44 -0.32 -15.61 16 5 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 8 Si 0.90 22.34 29.54 -169.99 -5.02 17.32 16 9 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 12 C 0.50 10.78 7.67 -10.99 -0.08 10.69 16 13 O -0.54 -14.09 15.56 5.55 0.09 -14.00 16 14 C -0.14 -2.09 4.22 -27.88 -0.12 -2.21 16 15 C 0.06 0.94 2.96 -3.83 -0.01 0.93 16 16 N -0.52 -6.30 5.20 -223.35 -1.16 -7.46 16 17 C 0.04 0.38 5.53 -2.30 -0.01 0.37 16 18 C -0.13 -1.04 7.08 -24.59 -0.17 -1.21 16 19 C -0.14 -1.15 5.58 -24.91 -0.14 -1.29 16 20 C 0.08 0.81 3.48 -66.72 -0.23 0.58 16 21 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 22 C -0.14 -1.69 3.73 -26.73 -0.10 -1.79 16 23 C 0.08 0.77 6.78 37.16 0.25 1.02 16 24 O -0.57 -6.51 13.66 -35.23 -0.48 -6.99 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 27 H 0.06 0.79 6.44 -51.92 -0.33 0.45 16 28 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 29 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.09 1.35 7.40 -51.93 -0.38 0.97 16 32 H 0.08 1.08 7.28 -51.93 -0.38 0.70 16 33 H 0.05 0.75 6.70 -51.93 -0.35 0.40 16 34 H 0.09 1.47 6.29 -51.93 -0.33 1.14 16 35 H 0.05 0.52 7.71 -51.93 -0.40 0.12 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.60 7.77 -51.93 -0.40 0.19 16 41 H 0.09 1.21 6.29 -51.93 -0.33 0.89 16 42 H 0.07 0.98 6.94 -51.93 -0.36 0.62 16 43 H 0.04 0.34 7.53 -51.93 -0.39 -0.05 16 44 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.38 2.34 9.12 45.56 0.42 2.75 16 LS Contribution 354.88 15.07 5.35 5.35 Total: -1.00 -35.30 354.88 -8.44 -43.73 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -6.97 Total: 0.55 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -0.45 Total: 1.69 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: -0.95 Total: -47.65 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.39 Total: -20.99 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.30 -8.44 -43.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336789022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.352 kcal (2) G-P(sol) polarization free energy of solvation -35.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds