Wall clock time and date at job start Fri Apr 10 2020 17:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 119.99882 * 2 1 4 4 C 1.50699 * 109.47331 * 270.00260 * 3 2 1 5 5 H 1.07997 * 119.99540 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00260 * 180.27928 * 4 3 2 7 7 N 1.31516 * 119.99860 * 359.71711 * 6 4 3 8 8 Si 1.86803 * 120.00090 * 179.72330 * 6 4 3 9 9 H 1.48497 * 109.46776 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47126 * 119.99488 * 8 6 4 11 11 H 1.48497 * 109.46761 * 239.99770 * 8 6 4 12 12 C 1.34773 * 119.99795 * 179.97438 * 2 1 3 13 13 O 1.21286 * 119.99442 * 180.02562 * 12 2 1 14 14 C 1.50696 * 120.00206 * 359.97438 * 12 2 1 15 15 C 1.53007 * 109.47002 * 180.02562 * 14 12 2 16 16 N 1.46899 * 109.46890 * 186.13673 * 15 14 12 17 17 C 1.47898 * 111.00237 * 77.71989 * 16 15 14 18 18 C 1.53995 * 107.05658 * 214.15314 * 17 16 15 19 19 C 1.54595 * 105.14283 * 1.22604 * 18 17 16 20 20 C 1.48533 * 110.99989 * 320.32188 * 16 15 14 21 21 H 1.08995 * 110.66504 * 41.28654 * 20 16 15 22 22 C 1.53002 * 110.66292 * 278.15876 * 20 16 15 23 23 C 1.53001 * 109.47528 * 67.21472 * 22 20 16 24 24 O 1.42895 * 109.47173 * 173.86427 * 23 22 20 25 25 H 1.08997 * 109.47390 * 89.99844 * 1 2 3 26 26 H 1.09002 * 109.47130 * 209.99914 * 1 2 3 27 27 H 1.08998 * 109.47388 * 329.99957 * 1 2 3 28 28 H 1.08996 * 109.47291 * 149.99416 * 3 2 1 29 29 H 1.09009 * 109.47039 * 29.99978 * 3 2 1 30 30 H 0.96999 * 119.99810 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47409 * 299.99829 * 14 12 2 32 32 H 1.08997 * 109.47034 * 60.00475 * 14 12 2 33 33 H 1.09002 * 109.46601 * 306.13137 * 15 14 12 34 34 H 1.08991 * 109.47320 * 66.13322 * 15 14 12 35 35 H 1.09004 * 109.91920 * 333.50477 * 17 16 15 36 36 H 1.08997 * 109.91814 * 94.60180 * 17 16 15 37 37 H 1.09004 * 110.31025 * 120.14151 * 18 17 16 38 38 H 1.08991 * 110.30971 * 242.20646 * 18 17 16 39 39 H 1.08994 * 110.72873 * 140.31328 * 19 18 17 40 40 H 1.08999 * 110.72265 * 263.42634 * 19 18 17 41 41 H 1.09004 * 109.46752 * 187.20980 * 22 20 16 42 42 H 1.09000 * 109.47576 * 307.20758 * 22 20 16 43 43 H 1.09004 * 109.46835 * 293.86784 * 23 22 20 44 44 H 1.08994 * 109.47128 * 53.85914 * 23 22 20 45 45 H 0.96710 * 113.99585 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0958 -2.2416 6 6 3.1314 2.8749 -1.6727 7 7 3.5586 3.6150 -0.6731 8 14 3.4494 3.4102 -3.4339 9 1 2.8712 2.4103 -4.3672 10 1 2.8172 4.7329 -3.6710 11 1 4.9129 3.5127 -3.6634 12 6 2.1388 -1.1672 0.0005 13 8 3.3517 -1.1671 0.0010 14 6 1.3854 -2.4723 0.0017 15 6 2.3797 -3.6352 0.0027 16 7 1.6512 -4.9024 -0.1442 17 6 1.2440 -5.1199 -1.5493 18 6 -0.1112 -5.8505 -1.5189 19 6 -0.4550 -6.0016 -0.0193 20 6 0.3926 -4.8873 0.6444 21 1 -0.1049 -3.9215 0.5564 22 6 0.6706 -5.2216 2.1113 23 6 1.4861 -4.0933 2.7460 24 8 1.6238 -4.3353 4.1475 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 3.1498 1.1385 0.5139 29 1 1.6083 2.0284 0.5139 30 1 4.0387 4.4390 -0.8504 31 1 0.7591 -2.5295 0.8919 32 1 0.7584 -2.5306 -0.8880 33 1 3.0763 -3.5183 -0.8274 34 1 2.9318 -3.6404 0.9424 35 1 1.1379 -4.1616 -2.0578 36 1 1.9874 -5.7312 -2.0609 37 1 -0.8729 -5.2561 -2.0236 38 1 -0.0236 -6.8299 -1.9891 39 1 -1.5179 -5.8314 0.1519 40 1 -0.1593 -6.9847 0.3470 41 1 -0.2740 -5.3312 2.6443 42 1 1.2319 -6.1540 2.1715 43 1 2.4732 -4.0550 2.2851 44 1 0.9751 -3.1434 2.5897 45 1 2.1315 -3.6581 4.6155 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336789023.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:30:42 Heat of formation + Delta-G solvation = -76.939491 kcal Electronic energy + Delta-G solvation = -23741.826906 eV Core-core repulsion = 20373.511871 eV Total energy + Delta-G solvation = -3368.315035 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.20060 -38.64887 -36.80331 -34.90922 -33.42731 -32.59449 -32.29688 -29.47792 -27.59536 -27.31000 -25.83116 -24.37667 -22.76173 -22.11080 -21.07734 -19.87468 -18.37761 -17.41383 -17.08200 -16.58726 -15.91156 -15.48746 -15.25937 -15.03360 -14.92620 -14.36109 -14.11677 -13.98465 -13.57038 -13.12934 -12.58159 -12.46666 -12.35970 -12.16875 -12.07683 -12.04189 -11.77212 -11.48520 -11.43663 -11.34169 -11.23054 -11.00400 -10.89351 -10.72075 -10.61574 -10.55481 -10.18791 -9.68765 -9.65228 -8.95659 -8.48044 -8.43688 -7.69765 -6.07765 -4.12512 3.27125 3.32564 3.35715 3.40383 3.76959 3.98873 4.04940 4.41656 4.48289 4.61535 4.79654 4.88572 5.00732 5.09264 5.09663 5.17145 5.22647 5.27792 5.34378 5.39678 5.45628 5.52174 5.59831 5.65411 5.67574 5.77827 5.83506 5.85479 5.90063 5.94640 6.04649 6.11525 6.15504 6.36478 6.84446 6.93961 7.01490 7.39100 7.49312 7.55128 7.88348 8.19671 8.35631 8.86109 9.03929 9.52770 11.00439 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.020483 B = 0.004151 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.627814 B = 6743.967419 C = 7462.994427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.603 5.603 3 C 0.244 3.756 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.506 3.494 13 O -0.541 6.541 14 C -0.180 4.180 15 C 0.051 3.949 16 N -0.509 5.509 17 C 0.031 3.969 18 C -0.131 4.131 19 C -0.117 4.117 20 C 0.052 3.948 21 H 0.067 0.933 22 C -0.101 4.101 23 C 0.062 3.938 24 O -0.579 6.579 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.044 0.956 29 H 0.031 0.969 30 H 0.263 0.737 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.049 0.951 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.042 0.958 45 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.180 -17.239 3.237 20.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.335 5.335 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.292 3.708 13 O -0.419 6.419 14 C -0.221 4.221 15 C -0.077 4.077 16 N -0.233 5.233 17 C -0.097 4.097 18 C -0.169 4.169 19 C -0.155 4.155 20 C -0.056 4.056 21 H 0.085 0.915 22 C -0.138 4.138 23 C -0.015 4.015 24 O -0.385 6.385 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -9.434 -17.990 3.292 20.579 hybrid contribution -0.140 1.792 -1.271 2.201 sum -9.574 -16.198 2.022 18.924 Atomic orbital electron populations 1.21607 0.81572 1.01510 1.01109 1.48183 1.06101 1.07994 1.71260 1.19313 0.92557 0.78035 0.97566 1.21449 1.36304 1.06418 0.92280 0.92537 1.24937 0.95320 0.96383 0.97468 1.69940 1.38316 1.14446 1.30672 0.86441 0.78138 0.78297 0.84540 1.19856 1.20921 1.20811 1.20201 0.88067 0.84945 0.77613 1.90676 1.13822 1.87243 1.50166 1.22494 1.00778 0.95291 1.03539 1.22384 0.95761 0.84864 1.04686 1.65026 1.19410 1.32171 1.06652 1.22891 0.96545 0.99826 0.90462 1.22385 0.96729 1.00974 0.96801 1.22483 0.99132 0.99105 0.94750 1.22955 0.90636 0.98652 0.93324 0.91477 1.21392 1.00382 0.99100 0.92976 1.22701 1.00271 0.97416 0.81137 1.86401 1.78115 1.52922 1.21057 0.93267 0.92878 0.91320 0.93834 0.95058 0.92739 0.89065 0.89649 0.89675 0.89008 0.93289 0.90239 0.91526 0.91045 0.91098 0.90634 0.91003 0.90440 0.91852 0.94019 0.77295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.34 10.29 59.85 0.62 1.96 16 2 N -0.60 -12.62 2.86 -182.96 -0.52 -13.14 16 3 C 0.24 6.38 5.20 -5.20 -0.03 6.36 16 4 C -0.53 -14.95 9.39 -34.44 -0.32 -15.27 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.58 13.29 55.43 0.74 -25.85 16 8 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 C 0.51 10.21 7.67 -10.99 -0.08 10.13 16 13 O -0.54 -13.28 15.48 5.55 0.09 -13.20 16 14 C -0.18 -2.55 2.76 -27.88 -0.08 -2.63 16 15 C 0.05 0.71 4.03 -3.82 -0.02 0.70 16 16 N -0.51 -5.94 5.22 -222.63 -1.16 -7.10 16 17 C 0.03 0.32 6.39 -2.76 -0.02 0.31 16 18 C -0.13 -1.10 6.93 -25.37 -0.18 -1.27 16 19 C -0.12 -0.97 6.50 -24.87 -0.16 -1.14 16 20 C 0.05 0.53 2.21 -65.78 -0.15 0.38 16 21 H 0.07 0.68 5.31 -51.93 -0.28 0.41 16 22 C -0.10 -1.05 5.33 -26.73 -0.14 -1.19 16 23 C 0.06 0.71 5.81 37.16 0.22 0.92 16 24 O -0.58 -6.77 13.66 -35.23 -0.48 -7.25 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.64 6.44 -51.93 -0.33 0.30 16 27 H 0.07 1.03 7.89 -51.93 -0.41 0.62 16 28 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 29 H 0.03 0.82 7.89 -51.92 -0.41 0.41 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.09 1.12 3.52 -51.93 -0.18 0.94 16 32 H 0.09 1.14 6.91 -51.93 -0.36 0.78 16 33 H 0.08 1.34 7.75 -51.93 -0.40 0.94 16 34 H 0.09 1.33 5.15 -51.93 -0.27 1.06 16 35 H 0.05 0.55 6.70 -51.93 -0.35 0.21 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.63 8.06 -51.93 -0.42 0.21 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.06 0.79 5.00 -51.93 -0.26 0.53 16 44 H 0.04 0.47 6.33 -51.93 -0.33 0.15 16 45 H 0.38 3.06 9.12 45.56 0.42 3.47 16 LS Contribution 345.92 15.07 5.21 5.21 Total: -1.00 -33.64 345.92 -8.06 -41.70 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -6.47 Total: 1.88 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -0.44 Total: 0.89 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: -0.95 Total: -46.09 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.40 Total: -20.45 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.64 -8.06 -41.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336789023.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.241 kcal (2) G-P(sol) polarization free energy of solvation -33.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds