Wall clock time and date at job start Fri Apr 10 2020 17:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 119.99882 * 2 1 4 4 C 1.50699 * 109.47331 * 270.00260 * 3 2 1 5 5 H 1.07997 * 119.99540 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00260 * 180.27928 * 4 3 2 7 7 N 1.31516 * 119.99860 * 359.71711 * 6 4 3 8 8 Si 1.86803 * 120.00090 * 179.72330 * 6 4 3 9 9 H 1.48497 * 109.46776 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47126 * 119.99488 * 8 6 4 11 11 H 1.48497 * 109.46761 * 239.99770 * 8 6 4 12 12 C 1.34773 * 119.99795 * 179.97438 * 2 1 3 13 13 O 1.21286 * 119.99442 * 180.02562 * 12 2 1 14 14 C 1.50696 * 120.00206 * 359.97438 * 12 2 1 15 15 C 1.53007 * 109.47002 * 180.02562 * 14 12 2 16 16 N 1.46899 * 109.46890 * 186.13673 * 15 14 12 17 17 C 1.47898 * 111.00237 * 77.71989 * 16 15 14 18 18 C 1.53995 * 107.05658 * 214.15314 * 17 16 15 19 19 C 1.54595 * 105.14283 * 1.22604 * 18 17 16 20 20 C 1.48533 * 110.99989 * 320.32188 * 16 15 14 21 21 H 1.08995 * 110.66504 * 41.28654 * 20 16 15 22 22 C 1.53002 * 110.66292 * 278.15876 * 20 16 15 23 23 C 1.53001 * 109.47528 * 67.21472 * 22 20 16 24 24 O 1.42895 * 109.47173 * 173.86427 * 23 22 20 25 25 H 1.08997 * 109.47390 * 89.99844 * 1 2 3 26 26 H 1.09002 * 109.47130 * 209.99914 * 1 2 3 27 27 H 1.08998 * 109.47388 * 329.99957 * 1 2 3 28 28 H 1.08996 * 109.47291 * 149.99416 * 3 2 1 29 29 H 1.09009 * 109.47039 * 29.99978 * 3 2 1 30 30 H 0.96999 * 119.99810 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47409 * 299.99829 * 14 12 2 32 32 H 1.08997 * 109.47034 * 60.00475 * 14 12 2 33 33 H 1.09002 * 109.46601 * 306.13137 * 15 14 12 34 34 H 1.08991 * 109.47320 * 66.13322 * 15 14 12 35 35 H 1.09004 * 109.91920 * 333.50477 * 17 16 15 36 36 H 1.08997 * 109.91814 * 94.60180 * 17 16 15 37 37 H 1.09004 * 110.31025 * 120.14151 * 18 17 16 38 38 H 1.08991 * 110.30971 * 242.20646 * 18 17 16 39 39 H 1.08994 * 110.72873 * 140.31328 * 19 18 17 40 40 H 1.08999 * 110.72265 * 263.42634 * 19 18 17 41 41 H 1.09004 * 109.46752 * 187.20980 * 22 20 16 42 42 H 1.09000 * 109.47576 * 307.20758 * 22 20 16 43 43 H 1.09004 * 109.46835 * 293.86784 * 23 22 20 44 44 H 1.08994 * 109.47128 * 53.85914 * 23 22 20 45 45 H 0.96710 * 113.99585 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0958 -2.2416 6 6 3.1314 2.8749 -1.6727 7 7 3.5586 3.6150 -0.6731 8 14 3.4494 3.4102 -3.4339 9 1 2.8712 2.4103 -4.3672 10 1 2.8172 4.7329 -3.6710 11 1 4.9129 3.5127 -3.6634 12 6 2.1388 -1.1672 0.0005 13 8 3.3517 -1.1671 0.0010 14 6 1.3854 -2.4723 0.0017 15 6 2.3797 -3.6352 0.0027 16 7 1.6512 -4.9024 -0.1442 17 6 1.2440 -5.1199 -1.5493 18 6 -0.1112 -5.8505 -1.5189 19 6 -0.4550 -6.0016 -0.0193 20 6 0.3926 -4.8873 0.6444 21 1 -0.1049 -3.9215 0.5564 22 6 0.6706 -5.2216 2.1113 23 6 1.4861 -4.0933 2.7460 24 8 1.6238 -4.3353 4.1475 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 3.1498 1.1385 0.5139 29 1 1.6083 2.0284 0.5139 30 1 4.0387 4.4390 -0.8504 31 1 0.7591 -2.5295 0.8919 32 1 0.7584 -2.5306 -0.8880 33 1 3.0763 -3.5183 -0.8274 34 1 2.9318 -3.6404 0.9424 35 1 1.1379 -4.1616 -2.0578 36 1 1.9874 -5.7312 -2.0609 37 1 -0.8729 -5.2561 -2.0236 38 1 -0.0236 -6.8299 -1.9891 39 1 -1.5179 -5.8314 0.1519 40 1 -0.1593 -6.9847 0.3470 41 1 -0.2740 -5.3312 2.6443 42 1 1.2319 -6.1540 2.1715 43 1 2.4732 -4.0550 2.2851 44 1 0.9751 -3.1434 2.5897 45 1 2.1315 -3.6581 4.6155 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336789023.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:30:41 Heat of formation + Delta-G solvation = -103.212869 kcal Electronic energy + Delta-G solvation = -23742.966205 eV Core-core repulsion = 20373.511871 eV Total energy + Delta-G solvation = -3369.454334 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.32011 -40.04846 -37.67970 -36.66077 -34.84051 -34.30114 -33.12839 -30.84038 -29.25226 -28.11487 -27.33853 -25.74844 -24.33340 -23.14152 -21.80865 -20.97957 -19.74718 -18.75798 -18.37538 -18.25668 -17.20434 -16.93645 -16.66666 -16.14032 -16.01371 -15.93200 -15.11197 -14.94334 -14.77440 -14.51141 -14.09058 -13.84075 -13.58412 -13.50383 -13.38599 -13.13272 -13.04225 -12.84176 -12.78345 -12.55341 -12.41557 -12.26675 -12.23553 -12.08686 -11.90043 -11.71603 -11.52725 -11.31285 -10.67789 -10.67207 -10.57280 -9.47262 -9.36936 -8.25528 -6.40397 1.34054 1.36603 1.48041 1.77052 2.27611 2.41435 2.96286 3.04263 3.26734 3.64715 3.76253 3.80892 3.90007 3.94825 4.08368 4.17126 4.29813 4.33846 4.42814 4.46560 4.49530 4.61233 4.62830 4.70355 4.79376 4.87399 4.89893 4.99514 5.01820 5.03693 5.09230 5.18301 5.19649 5.24710 5.36936 5.38145 5.52666 5.80150 5.97342 6.02849 6.03210 6.65730 6.74475 6.81290 7.25064 7.43586 8.81802 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.020483 B = 0.004151 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.627814 B = 6743.967419 C = 7462.994427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.611 5.611 3 C 0.258 3.742 4 C -0.543 4.543 5 H 0.051 0.949 6 C 0.008 3.992 7 N -0.928 5.928 8 Si 0.968 3.032 9 H -0.268 1.268 10 H -0.268 1.268 11 H -0.281 1.281 12 C 0.497 3.503 13 O -0.595 6.595 14 C -0.157 4.157 15 C 0.060 3.940 16 N -0.514 5.514 17 C 0.025 3.975 18 C -0.125 4.125 19 C -0.112 4.112 20 C 0.050 3.950 21 H 0.073 0.927 22 C -0.096 4.096 23 C 0.061 3.939 24 O -0.592 6.592 25 H 0.057 0.943 26 H 0.096 0.904 27 H 0.072 0.928 28 H -0.002 1.002 29 H 0.024 0.976 30 H 0.268 0.732 31 H 0.119 0.881 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.040 0.960 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.048 0.952 44 H 0.044 0.956 45 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.632 -18.452 2.335 22.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.342 5.342 3 C 0.136 3.864 4 C -0.582 4.582 5 H 0.069 0.931 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.792 3.208 9 H -0.192 1.192 10 H -0.193 1.193 11 H -0.207 1.207 12 C 0.286 3.714 13 O -0.477 6.477 14 C -0.198 4.198 15 C -0.069 4.069 16 N -0.237 5.237 17 C -0.103 4.103 18 C -0.163 4.163 19 C -0.150 4.150 20 C -0.058 4.058 21 H 0.091 0.909 22 C -0.134 4.134 23 C -0.016 4.016 24 O -0.400 6.400 25 H 0.076 0.924 26 H 0.115 0.885 27 H 0.091 0.909 28 H 0.016 0.984 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.136 0.864 32 H 0.123 0.877 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.059 0.941 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -11.937 -19.220 2.400 22.752 hybrid contribution 0.644 2.144 -0.920 2.421 sum -11.293 -17.076 1.479 20.526 Atomic orbital electron populations 1.21911 0.77973 1.03925 1.02398 1.48216 1.08366 1.06509 1.71128 1.18786 0.91167 0.80380 0.96025 1.21712 1.36714 1.06703 0.93032 0.93081 1.25854 0.94856 0.96408 1.01978 1.70051 1.38807 1.14930 1.32971 0.85369 0.77915 0.78434 0.79099 1.19213 1.19281 1.20723 1.21234 0.87800 0.86432 0.75976 1.90646 1.16531 1.88142 1.52379 1.22413 1.00429 0.91387 1.05551 1.22188 0.95603 0.85959 1.03158 1.65035 1.20604 1.30264 1.07805 1.22970 0.98017 0.99749 0.89517 1.22379 0.95374 1.01410 0.97151 1.22495 0.99895 0.98348 0.94213 1.23055 0.90014 0.99765 0.92917 0.90907 1.21375 1.00557 0.98153 0.93302 1.22704 0.99734 0.98052 0.81108 1.86368 1.78492 1.53938 1.21236 0.92434 0.88533 0.90942 0.98379 0.95776 0.92351 0.86358 0.87741 0.92265 0.89993 0.94115 0.90507 0.90414 0.89980 0.89069 0.90534 0.89774 0.91315 0.93365 0.93759 0.75754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.31 10.29 127.77 1.31 3.63 16 2 N -0.61 -25.61 2.86 -851.14 -2.43 -28.04 16 3 C 0.26 13.94 5.20 85.63 0.45 14.39 16 4 C -0.54 -31.49 9.39 25.60 0.24 -31.25 16 5 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 6 C 0.01 0.47 5.46 84.65 0.46 0.93 16 7 N -0.93 -56.22 13.29 21.45 0.28 -55.94 16 8 Si 0.97 45.02 29.54 68.60 2.03 47.05 16 9 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 12 C 0.50 20.26 7.67 87.66 0.67 20.93 16 13 O -0.60 -30.59 15.48 -3.05 -0.05 -30.64 16 14 C -0.16 -4.22 2.76 29.85 0.08 -4.14 16 15 C 0.06 1.65 4.03 86.31 0.35 2.00 16 16 N -0.51 -11.27 5.22 -858.26 -4.48 -15.75 16 17 C 0.03 0.49 6.39 86.45 0.55 1.04 16 18 C -0.13 -1.70 6.93 31.47 0.22 -1.48 16 19 C -0.11 -1.46 6.50 31.80 0.21 -1.26 16 20 C 0.05 0.87 2.21 45.26 0.10 0.97 16 21 H 0.07 1.19 5.31 -2.39 -0.01 1.17 16 22 C -0.10 -1.79 5.33 30.60 0.16 -1.63 16 23 C 0.06 1.32 5.81 71.98 0.42 1.74 16 24 O -0.59 -13.19 13.66 -148.98 -2.03 -15.23 16 25 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.10 1.94 6.44 -2.39 -0.02 1.92 16 27 H 0.07 2.04 7.89 -2.39 -0.02 2.02 16 28 H 0.00 -0.12 7.42 -2.39 -0.02 -0.14 16 29 H 0.02 1.32 7.89 -2.38 -0.02 1.30 16 30 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 31 H 0.12 2.56 3.52 -2.39 -0.01 2.55 16 32 H 0.10 2.48 6.91 -2.39 -0.02 2.46 16 33 H 0.06 1.93 7.75 -2.39 -0.02 1.92 16 34 H 0.08 2.44 5.15 -2.39 -0.01 2.42 16 35 H 0.04 0.85 6.70 -2.38 -0.02 0.83 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.08 0.91 8.14 -2.38 -0.02 0.90 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 39 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.08 1.02 8.06 -2.39 -0.02 1.00 16 41 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.05 1.20 5.00 -2.38 -0.01 1.19 16 44 H 0.04 0.92 6.33 -2.39 -0.02 0.90 16 45 H 0.39 6.05 9.12 -74.05 -0.68 5.38 16 Total: -1.00 -75.50 345.92 -1.15 -76.65 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.31 Total: 16.03 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 5.22 Total: 5.87 kcal Atomic # 7 Polarization: -93.10 SS G_CDS: -6.63 Total: -99.73 kcal Atomic # 8 Polarization: -43.78 SS G_CDS: -2.08 Total: -45.87 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -75.50 -1.15 -76.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336789023.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.562 kcal (2) G-P(sol) polarization free energy of solvation -75.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds