Wall clock time and date at job start Fri Apr 10 2020 17:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.36933 * 119.99737 * 2 1 4 4 H 1.08001 * 120.00054 * 154.52215 * 3 2 1 5 5 C 1.38815 * 119.99930 * 334.51654 * 3 2 1 6 6 N 1.31613 * 120.00323 * 3.80726 * 5 3 2 7 7 Si 1.86800 * 119.99825 * 183.81252 * 5 3 2 8 8 H 1.48504 * 109.47227 * 89.99742 * 7 5 3 9 9 H 1.48496 * 109.47203 * 209.99740 * 7 5 3 10 10 H 1.48499 * 109.47043 * 329.99949 * 7 5 3 11 11 S 1.65599 * 120.00128 * 179.71772 * 2 1 3 12 12 O 1.42093 * 106.40363 * 203.54204 * 11 2 1 13 13 O 1.42106 * 106.40109 * 336.46388 * 11 2 1 14 14 C 1.76200 * 107.21515 * 90.00092 * 11 2 1 15 15 C 1.38285 * 119.98407 * 114.72793 * 14 11 2 16 16 C 1.38215 * 120.14248 * 179.68375 * 15 14 11 17 17 C 1.38278 * 120.14159 * 0.64188 * 16 15 14 18 18 C 1.38504 * 120.03121 * 359.64129 * 17 16 15 19 19 C 1.38506 * 119.98769 * 294.99845 * 14 11 2 20 20 O 1.36494 * 131.54126 * 0.02768 * 19 14 11 21 21 C 1.43989 * 105.48834 * 162.67963 * 20 19 14 22 22 O 1.36502 * 131.53971 * 180.02562 * 18 17 16 23 23 H 1.09000 * 109.46775 * 84.45984 * 1 2 3 24 24 H 1.09001 * 109.46783 * 204.45747 * 1 2 3 25 25 H 1.08994 * 109.47120 * 324.45613 * 1 2 3 26 26 H 0.96998 * 120.00476 * 180.02562 * 6 5 3 27 27 H 1.08000 * 119.92558 * 0.02562 * 15 14 11 28 28 H 1.07991 * 119.92599 * 180.28453 * 16 15 14 29 29 H 1.08000 * 119.98837 * 179.66343 * 17 16 15 30 30 H 1.08997 * 110.56631 * 268.55583 * 21 20 19 31 31 H 1.08999 * 110.69378 * 145.75147 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1509 1.2314 0.4023 5 6 1.5568 2.3296 -0.5172 6 7 0.3106 2.2917 -0.9388 7 14 2.5279 3.9223 -0.6151 8 1 3.2292 3.9950 -1.9221 9 1 1.6016 5.0756 -0.4856 10 1 3.5251 3.9624 0.4845 11 16 2.2931 -1.4341 0.0071 12 8 3.5760 -1.1541 0.5501 13 8 1.4114 -2.4038 0.5562 14 6 2.5539 -1.8940 -1.6738 15 6 3.8376 -1.9441 -2.1853 16 6 4.0465 -2.3108 -3.5015 17 6 2.9716 -2.6162 -4.3161 18 6 1.6826 -2.5625 -3.8121 19 6 1.4726 -2.1997 -2.4836 20 8 0.1312 -2.2213 -2.2325 21 6 -0.5024 -2.2030 -3.5254 22 8 0.4726 -2.8114 -4.3928 23 1 -0.3633 0.0992 -1.0229 24 1 -0.3633 -0.9355 0.4255 25 1 -0.3633 0.8361 0.5974 26 1 -0.1035 3.0907 -1.3006 27 1 4.6793 -1.7016 -1.5535 28 1 5.0508 -2.3532 -3.8961 29 1 3.1373 -2.8971 -5.3457 30 1 -0.7065 -1.1787 -3.8373 31 1 -1.4216 -2.7886 -3.5121 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337786302.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:30:46 Heat of formation + Delta-G solvation = -88.171363 kcal Electronic energy + Delta-G solvation = -21427.341473 eV Core-core repulsion = 17996.074313 eV Total energy + Delta-G solvation = -3431.267160 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.055 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.85884 -37.43348 -36.10566 -35.75277 -35.63362 -34.45151 -31.48599 -30.42248 -29.64684 -26.45281 -25.57186 -23.48703 -22.90029 -22.60932 -18.66887 -17.97957 -17.73286 -17.26816 -16.84720 -16.31439 -16.08579 -15.13408 -14.65872 -14.43227 -14.21339 -13.91759 -13.49196 -13.09452 -12.85017 -12.66787 -12.57432 -12.11694 -11.91150 -11.58912 -11.21446 -11.13862 -11.00715 -10.73947 -10.70662 -10.64753 -10.22451 -10.16702 -9.81076 -9.21528 -8.81191 -8.14412 -7.78387 -6.56186 -4.08430 1.20805 1.47564 1.73907 2.99813 3.09569 3.13952 3.18867 3.68344 3.75483 3.96464 4.44101 4.74824 4.81928 4.93344 5.03109 5.07854 5.28891 5.30469 5.50043 5.69300 5.87648 6.08499 6.33070 6.50906 6.51495 6.57647 6.69583 6.95137 7.17855 7.24205 7.39150 7.53767 8.27567 8.63491 9.11088 10.37393 Molecular weight = 285.05amu Principal moments of inertia in cm(-1) A = 0.017118 B = 0.007957 C = 0.007620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.354440 B = 3518.060203 C = 3673.533543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.131 3.869 2 N -0.806 5.806 3 C -0.249 4.249 4 H 0.116 0.884 5 C 0.035 3.965 6 N -0.836 5.836 7 Si 0.923 3.077 8 H -0.273 1.273 9 H -0.280 1.280 10 H -0.262 1.262 11 S 2.541 3.459 12 O -0.984 6.984 13 O -0.991 6.991 14 C -0.638 4.638 15 C -0.026 4.026 16 C -0.140 4.140 17 C -0.073 4.073 18 C 0.000 4.000 19 C 0.131 3.869 20 O -0.291 6.291 21 C 0.210 3.790 22 O -0.314 6.314 23 H 0.049 0.951 24 H 0.040 0.960 25 H 0.079 0.921 26 H 0.274 0.726 27 H 0.149 0.851 28 H 0.137 0.863 29 H 0.131 0.869 30 H 0.087 0.913 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.458 -3.216 -6.784 7.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.015 4.015 2 N -0.632 5.632 3 C -0.395 4.395 4 H 0.134 0.866 5 C -0.177 4.177 6 N -0.477 5.477 7 Si 0.748 3.252 8 H -0.198 1.198 9 H -0.205 1.205 10 H -0.187 1.187 11 S 2.636 3.364 12 O -0.973 6.973 13 O -0.980 6.980 14 C -0.714 4.714 15 C -0.045 4.045 16 C -0.159 4.159 17 C -0.092 4.092 18 C -0.045 4.045 19 C 0.084 3.916 20 O -0.206 6.206 21 C 0.098 3.902 22 O -0.231 6.231 23 H 0.068 0.932 24 H 0.059 0.941 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.166 0.834 28 H 0.155 0.845 29 H 0.149 0.851 30 H 0.104 0.896 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.391 -4.020 -6.197 7.397 hybrid contribution 0.065 0.848 -1.293 1.547 sum 0.456 -3.172 -7.490 8.147 Atomic orbital electron populations 1.21325 0.78632 0.99614 1.01919 1.53758 1.13346 1.18680 1.77433 1.19963 1.02372 0.83981 1.33219 0.86619 1.25794 0.96060 1.00946 0.94875 1.70134 1.11027 1.30364 1.36161 0.85957 0.79649 0.80072 0.79484 1.19837 1.20513 1.18653 1.11043 0.73659 0.74701 0.76993 1.93338 1.41583 1.84695 1.77691 1.93383 1.65114 1.61534 1.77957 1.31394 0.94913 1.13078 1.32036 1.20786 0.94952 0.93511 0.95297 1.20988 0.98152 1.02649 0.94108 1.20091 0.88060 1.00881 1.00182 1.19847 0.87910 1.04971 0.91722 1.19054 0.83912 0.96169 0.92458 1.87505 1.14683 1.89361 1.29016 1.25672 0.91725 0.99627 0.73128 1.87291 1.13666 1.74177 1.47992 0.93231 0.94115 0.90256 0.91575 0.83381 0.84549 0.85095 0.89567 0.85189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.06 8.58 59.85 0.51 3.57 16 2 N -0.81 -19.95 3.31 -66.68 -0.22 -20.17 16 3 C -0.25 -6.21 9.42 -15.06 -0.14 -6.36 16 4 H 0.12 2.86 7.16 -52.49 -0.38 2.48 16 5 C 0.03 0.83 5.38 -17.43 -0.09 0.74 16 6 N -0.84 -20.11 10.14 55.49 0.56 -19.55 16 7 Si 0.92 18.48 29.56 -169.99 -5.02 13.45 16 8 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 9 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 10 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 11 S 2.54 61.90 5.59 -107.50 -0.60 61.30 16 12 O -0.98 -25.02 15.77 -57.17 -0.90 -25.92 16 13 O -0.99 -25.89 16.48 -57.17 -0.94 -26.83 16 14 C -0.64 -13.97 5.92 -39.47 -0.23 -14.21 16 15 C -0.03 -0.50 9.54 -39.57 -0.38 -0.88 16 16 C -0.14 -2.18 10.04 -39.57 -0.40 -2.58 16 17 C -0.07 -1.16 10.06 -39.47 -0.40 -1.56 16 18 C 0.00 0.00 7.15 -39.08 -0.28 -0.28 16 19 C 0.13 2.76 6.78 -39.08 -0.27 2.50 16 20 O -0.29 -5.88 10.83 -45.67 -0.49 -6.38 16 21 C 0.21 3.22 8.89 101.05 0.90 4.11 16 22 O -0.31 -5.34 11.40 -45.69 -0.52 -5.86 16 23 H 0.05 1.15 7.20 -51.93 -0.37 0.78 16 24 H 0.04 0.92 6.90 -51.93 -0.36 0.56 16 25 H 0.08 1.86 7.05 -51.93 -0.37 1.50 16 26 H 0.27 6.15 8.31 -40.82 -0.34 5.81 16 27 H 0.15 2.60 7.33 -52.49 -0.38 2.22 16 28 H 0.14 1.57 8.06 -52.49 -0.42 1.14 16 29 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.13 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 282.51 15.07 4.26 4.26 Total: -1.00 -30.74 282.51 -7.34 -38.08 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -2.68 Total: 2.55 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -0.77 Total: -14.94 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.34 Total: -39.72 kcal Atomic # 8 Polarization: -62.13 SS G_CDS: -2.86 Total: -64.99 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.02 Total: 13.45 kcal Atomic # 16 Polarization: 61.90 SS G_CDS: -0.60 Total: 61.30 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.74 -7.34 -38.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337786302.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.088 kcal (2) G-P(sol) polarization free energy of solvation -30.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds