Wall clock time and date at job start Fri Apr 10 2020 17:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.36933 * 119.99737 * 2 1 4 4 H 1.08001 * 120.00054 * 154.52215 * 3 2 1 5 5 C 1.38815 * 119.99930 * 334.51654 * 3 2 1 6 6 N 1.31613 * 120.00323 * 3.80726 * 5 3 2 7 7 Si 1.86800 * 119.99825 * 183.81252 * 5 3 2 8 8 H 1.48504 * 109.47227 * 89.99742 * 7 5 3 9 9 H 1.48496 * 109.47203 * 209.99740 * 7 5 3 10 10 H 1.48499 * 109.47043 * 329.99949 * 7 5 3 11 11 S 1.65599 * 120.00128 * 179.71772 * 2 1 3 12 12 O 1.42093 * 106.40363 * 203.54204 * 11 2 1 13 13 O 1.42106 * 106.40109 * 336.46388 * 11 2 1 14 14 C 1.76200 * 107.21515 * 90.00092 * 11 2 1 15 15 C 1.38285 * 119.98407 * 114.72793 * 14 11 2 16 16 C 1.38215 * 120.14248 * 179.68375 * 15 14 11 17 17 C 1.38278 * 120.14159 * 0.64188 * 16 15 14 18 18 C 1.38504 * 120.03121 * 359.64129 * 17 16 15 19 19 C 1.38506 * 119.98769 * 294.99845 * 14 11 2 20 20 O 1.36494 * 131.54126 * 0.02768 * 19 14 11 21 21 C 1.43989 * 105.48834 * 162.67963 * 20 19 14 22 22 O 1.36502 * 131.53971 * 180.02562 * 18 17 16 23 23 H 1.09000 * 109.46775 * 84.45984 * 1 2 3 24 24 H 1.09001 * 109.46783 * 204.45747 * 1 2 3 25 25 H 1.08994 * 109.47120 * 324.45613 * 1 2 3 26 26 H 0.96998 * 120.00476 * 180.02562 * 6 5 3 27 27 H 1.08000 * 119.92558 * 0.02562 * 15 14 11 28 28 H 1.07991 * 119.92599 * 180.28453 * 16 15 14 29 29 H 1.08000 * 119.98837 * 179.66343 * 17 16 15 30 30 H 1.08997 * 110.56631 * 268.55583 * 21 20 19 31 31 H 1.08999 * 110.69378 * 145.75147 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1509 1.2314 0.4023 5 6 1.5568 2.3296 -0.5172 6 7 0.3106 2.2917 -0.9388 7 14 2.5279 3.9223 -0.6151 8 1 3.2292 3.9950 -1.9221 9 1 1.6016 5.0756 -0.4856 10 1 3.5251 3.9624 0.4845 11 16 2.2931 -1.4341 0.0071 12 8 3.5760 -1.1541 0.5501 13 8 1.4114 -2.4038 0.5562 14 6 2.5539 -1.8940 -1.6738 15 6 3.8376 -1.9441 -2.1853 16 6 4.0465 -2.3108 -3.5015 17 6 2.9716 -2.6162 -4.3161 18 6 1.6826 -2.5625 -3.8121 19 6 1.4726 -2.1997 -2.4836 20 8 0.1312 -2.2213 -2.2325 21 6 -0.5024 -2.2030 -3.5254 22 8 0.4726 -2.8114 -4.3928 23 1 -0.3633 0.0992 -1.0229 24 1 -0.3633 -0.9355 0.4255 25 1 -0.3633 0.8361 0.5974 26 1 -0.1035 3.0907 -1.3006 27 1 4.6793 -1.7016 -1.5535 28 1 5.0508 -2.3532 -3.8961 29 1 3.1373 -2.8971 -5.3457 30 1 -0.7065 -1.1787 -3.8373 31 1 -1.4216 -2.7886 -3.5121 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337786302.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:30:44 Heat of formation + Delta-G solvation = -110.419734 kcal Electronic energy + Delta-G solvation = -21428.306235 eV Core-core repulsion = 17996.074313 eV Total energy + Delta-G solvation = -3432.231922 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.055 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.21349 -38.81317 -37.86323 -37.53895 -37.31675 -36.48841 -33.31679 -31.85138 -31.00226 -28.31662 -26.82503 -25.35588 -24.37271 -24.00551 -20.44897 -19.62392 -19.11273 -18.81038 -18.59595 -18.02698 -17.52920 -16.68190 -16.48052 -16.13675 -15.60513 -15.29828 -15.11496 -14.69538 -14.60220 -14.05828 -13.98604 -13.72734 -13.49440 -13.09909 -13.04718 -12.99775 -12.75256 -12.72355 -12.40897 -12.13425 -12.01444 -11.90248 -11.50605 -11.01674 -10.26915 -9.97544 -9.16463 -8.33600 -5.97906 -0.30504 -0.07031 0.08051 1.50574 1.51550 1.62399 1.68485 2.22082 2.38214 2.43096 2.65446 2.92303 3.16048 3.42627 3.69292 3.81699 3.96377 4.09988 4.19097 4.29072 4.41546 4.62173 4.73178 4.92001 5.06495 5.13430 5.20343 5.29157 5.39391 5.40371 5.65530 6.02203 6.42758 6.81402 7.26696 8.62035 Molecular weight = 285.05amu Principal moments of inertia in cm(-1) A = 0.017118 B = 0.007957 C = 0.007620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.354440 B = 3518.060203 C = 3673.533543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.145 3.855 2 N -0.826 5.826 3 C -0.288 4.288 4 H 0.108 0.892 5 C 0.003 3.997 6 N -0.862 5.862 7 Si 0.984 3.016 8 H -0.269 1.269 9 H -0.273 1.273 10 H -0.261 1.261 11 S 2.569 3.431 12 O -1.001 7.001 13 O -1.016 7.016 14 C -0.671 4.671 15 C -0.043 4.043 16 C -0.121 4.121 17 C -0.059 4.059 18 C -0.010 4.010 19 C 0.101 3.899 20 O -0.320 6.320 21 C 0.202 3.798 22 O -0.313 6.313 23 H 0.045 0.955 24 H 0.039 0.961 25 H 0.071 0.929 26 H 0.278 0.722 27 H 0.154 0.846 28 H 0.188 0.812 29 H 0.176 0.824 30 H 0.096 0.904 31 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.565 -3.430 -9.229 9.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 N -0.652 5.652 3 C -0.432 4.432 4 H 0.126 0.874 5 C -0.206 4.206 6 N -0.502 5.502 7 Si 0.807 3.193 8 H -0.194 1.194 9 H -0.197 1.197 10 H -0.185 1.185 11 S 2.668 3.332 12 O -0.991 6.991 13 O -1.006 7.006 14 C -0.753 4.753 15 C -0.062 4.062 16 C -0.139 4.139 17 C -0.077 4.077 18 C -0.055 4.055 19 C 0.055 3.945 20 O -0.235 6.235 21 C 0.091 3.909 22 O -0.230 6.230 23 H 0.064 0.936 24 H 0.058 0.942 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.171 0.829 28 H 0.205 0.795 29 H 0.194 0.806 30 H 0.114 0.886 31 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 1.471 -4.182 -8.596 9.672 hybrid contribution -0.255 0.707 -0.651 0.994 sum 1.216 -3.475 -9.248 9.954 Atomic orbital electron populations 1.21148 0.78425 0.99051 1.01421 1.53506 1.13520 1.18628 1.79579 1.20008 1.02449 0.84882 1.35900 0.87438 1.26446 0.96786 1.03276 0.94074 1.70189 1.11853 1.31307 1.36833 0.85054 0.78384 0.76487 0.79413 1.19389 1.19744 1.18508 1.09089 0.72899 0.74045 0.77193 1.93311 1.42083 1.85008 1.78683 1.93349 1.65919 1.62165 1.79144 1.30870 0.97108 1.16982 1.30330 1.21082 0.93778 0.94002 0.97353 1.21531 1.00548 0.99640 0.92215 1.20745 0.86683 0.98139 1.02160 1.20214 0.89385 1.05031 0.90843 1.19301 0.84083 0.97289 0.93853 1.87454 1.14790 1.89552 1.31733 1.26167 0.92218 1.01204 0.71271 1.87274 1.13362 1.74322 1.47999 0.93615 0.94237 0.91073 0.91159 0.82887 0.79489 0.80626 0.88591 0.81230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 7.06 8.58 127.77 1.10 8.15 16 2 N -0.83 -42.26 3.31 -364.88 -1.21 -43.47 16 3 C -0.29 -14.85 9.42 84.03 0.79 -14.06 16 4 H 0.11 5.52 7.16 -2.91 -0.02 5.50 16 5 C 0.00 0.14 5.38 84.86 0.46 0.60 16 6 N -0.86 -42.10 10.14 21.65 0.22 -41.88 16 7 Si 0.98 37.87 29.56 68.60 2.03 39.90 16 8 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 9 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 10 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 11 S 2.57 128.55 5.59 -56.49 -0.32 128.23 16 12 O -1.00 -52.14 15.77 -128.00 -2.02 -54.16 16 13 O -1.02 -54.74 16.48 -128.00 -2.11 -56.84 16 14 C -0.67 -29.39 5.92 22.34 0.13 -29.26 16 15 C -0.04 -1.55 9.54 22.28 0.21 -1.34 16 16 C -0.12 -3.25 10.04 22.27 0.22 -3.03 16 17 C -0.06 -1.61 10.06 22.34 0.22 -1.38 16 18 C -0.01 -0.35 7.15 22.59 0.16 -0.19 16 19 C 0.10 4.24 6.78 22.59 0.15 4.39 16 20 O -0.32 -12.97 10.83 -75.98 -0.82 -13.79 16 21 C 0.20 5.90 8.89 113.37 1.01 6.91 16 22 O -0.31 -9.90 11.40 -76.07 -0.87 -10.77 16 23 H 0.05 2.20 7.20 -2.39 -0.02 2.19 16 24 H 0.04 1.86 6.90 -2.39 -0.02 1.84 16 25 H 0.07 3.49 7.05 -2.39 -0.02 3.47 16 26 H 0.28 12.58 8.31 -92.71 -0.77 11.81 16 27 H 0.15 5.22 7.33 -2.91 -0.02 5.20 16 28 H 0.19 3.11 8.06 -2.92 -0.02 3.09 16 29 H 0.18 3.24 8.06 -2.91 -0.02 3.22 16 30 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.17 3.44 8.14 -2.39 -0.02 3.42 16 Total: -1.00 -68.13 282.51 0.53 -67.59 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 1.17 Total: 14.38 kcal Atomic # 6 Polarization: -33.65 SS G_CDS: 4.46 Total: -29.19 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -0.99 Total: -85.35 kcal Atomic # 8 Polarization: -129.74 SS G_CDS: -5.82 Total: -135.56 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 2.03 Total: 39.90 kcal Atomic # 16 Polarization: 128.55 SS G_CDS: -0.32 Total: 128.23 kcal Total: -68.13 0.53 -67.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337786302.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.825 kcal (2) G-P(sol) polarization free energy of solvation -68.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds