Wall clock time and date at job start Fri Apr 10 2020 17:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48501 * 109.46948 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47174 * 299.99627 * 3 2 1 6 6 H 1.48497 * 109.47378 * 59.99542 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 S 1.65596 * 119.99677 * 165.00101 * 10 9 7 12 12 O 1.42106 * 106.40283 * 178.54151 * 11 10 9 13 13 O 1.42105 * 106.40421 * 311.45913 * 11 10 9 14 14 C 1.76198 * 107.22309 * 65.00118 * 11 10 9 15 15 C 1.38274 * 119.98774 * 114.72121 * 14 11 10 16 16 C 1.38213 * 120.14420 * 179.68952 * 15 14 11 17 17 C 1.38277 * 120.14279 * 0.64063 * 16 15 14 18 18 C 1.38499 * 120.02880 * 359.64655 * 17 16 15 19 19 C 1.38508 * 119.98505 * 295.00228 * 14 11 10 20 20 O 1.36496 * 131.53912 * 0.02562 * 19 14 11 21 21 C 1.43983 * 105.48801 * 162.68443 * 20 19 14 22 22 O 1.36496 * 131.54153 * 180.02562 * 18 17 16 23 23 H 0.96992 * 120.00316 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 25 25 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 26 26 H 0.96996 * 120.00063 * 345.00522 * 10 9 7 27 27 H 1.08006 * 119.92625 * 0.02562 * 15 14 11 28 28 H 1.08001 * 119.92575 * 180.29149 * 16 15 14 29 29 H 1.08001 * 119.98531 * 179.66460 * 17 16 15 30 30 H 1.09005 * 110.57109 * 268.55768 * 21 20 19 31 31 H 1.09002 * 110.70403 * 145.75292 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2034 -3.6126 0.0005 11 16 1.6886 -5.1421 0.3717 12 8 2.8242 -5.9879 0.2518 13 8 0.9255 -5.0301 1.5652 14 6 0.5650 -5.6356 -0.8927 15 6 0.8867 -6.6869 -1.7313 16 6 0.0050 -7.0808 -2.7201 17 6 -1.1969 -6.4169 -2.8835 18 6 -1.5232 -5.3592 -2.0510 19 6 -0.6375 -4.9665 -1.0499 20 8 -1.1828 -3.9139 -0.3734 21 6 -2.2237 -3.4052 -1.2282 22 8 -2.6232 -4.5526 -2.0010 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5570 -0.8897 25 1 0.6243 -2.5567 0.8903 26 1 3.1352 -3.4538 -0.2168 27 1 1.8267 -7.2048 -1.6100 28 1 0.2578 -7.9054 -3.3701 29 1 -1.8816 -6.7234 -3.6604 30 1 -1.8360 -2.6213 -1.8790 31 1 -3.0598 -3.0316 -0.6370 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337789252.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:30:50 Heat of formation + Delta-G solvation = -104.915431 kcal Electronic energy + Delta-G solvation = -20997.654707 eV Core-core repulsion = 17565.661470 eV Total energy + Delta-G solvation = -3431.993237 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.055 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.09512 -37.82051 -36.70514 -36.16663 -35.31390 -34.60747 -32.17223 -30.91658 -29.94078 -26.75258 -25.64916 -23.42781 -22.95639 -22.49301 -19.23533 -18.11937 -17.93770 -17.58646 -16.97735 -16.45648 -15.91634 -15.54115 -15.35206 -14.62582 -14.54750 -14.07210 -13.72534 -13.47658 -12.91986 -12.87300 -12.57536 -12.47565 -12.08119 -12.03905 -11.82383 -11.57647 -11.45390 -10.99579 -10.90898 -10.73736 -10.48335 -10.13996 -9.42160 -9.28369 -8.91415 -8.23369 -8.03079 -6.20902 -4.24289 0.71025 1.02183 1.14379 2.81389 3.21840 3.29882 3.32498 3.35457 3.51368 3.72906 4.17445 4.31775 4.46517 4.75863 4.92961 5.01562 5.16363 5.17990 5.21923 5.34503 5.49049 5.77085 5.90961 6.08968 6.17108 6.36619 6.46730 7.13279 7.28610 7.38313 7.78432 7.81728 8.17158 8.80276 9.40178 10.89394 Molecular weight = 285.05amu Principal moments of inertia in cm(-1) A = 0.018145 B = 0.007033 C = 0.005633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.792537 B = 3980.434379 C = 4969.450644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.902 3.098 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.066 0.934 9 C 0.250 3.750 10 N -1.101 6.101 11 S 2.693 3.307 12 O -0.978 6.978 13 O -0.952 6.952 14 C -0.660 4.660 15 C -0.022 4.022 16 C -0.139 4.139 17 C -0.057 4.057 18 C 0.008 3.992 19 C 0.145 3.855 20 O -0.275 6.275 21 C 0.214 3.786 22 O -0.312 6.312 23 H 0.264 0.736 24 H 0.019 0.981 25 H 0.044 0.956 26 H 0.411 0.589 27 H 0.154 0.846 28 H 0.143 0.857 29 H 0.138 0.862 30 H 0.099 0.901 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.742 -10.414 -6.771 12.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.568 4.568 8 H 0.084 0.916 9 C 0.127 3.873 10 N -0.864 5.864 11 S 2.779 3.221 12 O -0.968 6.968 13 O -0.942 6.942 14 C -0.744 4.744 15 C -0.041 4.041 16 C -0.158 4.158 17 C -0.076 4.076 18 C -0.037 4.037 19 C 0.097 3.903 20 O -0.189 6.189 21 C 0.103 3.897 22 O -0.228 6.228 23 H 0.073 0.927 24 H 0.037 0.963 25 H 0.062 0.938 26 H 0.245 0.755 27 H 0.172 0.828 28 H 0.161 0.839 29 H 0.156 0.844 30 H 0.117 0.883 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.088 -10.715 -5.886 12.609 hybrid contribution 0.101 1.394 -0.815 1.618 sum -2.987 -9.322 -6.701 11.863 Atomic orbital electron populations 1.69936 1.05994 1.27035 1.49874 1.24940 0.95006 0.99329 0.94828 0.86378 0.80030 0.82953 0.77667 1.19614 1.20938 1.20789 1.21290 0.93529 0.90004 1.51969 0.91587 1.19143 0.87443 0.83166 0.97573 1.55461 1.19598 1.23749 1.87624 1.01894 0.73170 0.72897 0.74158 1.93515 1.49233 1.66822 1.87236 1.93597 1.72458 1.86116 1.42032 1.30117 1.10334 1.09483 1.24506 1.20766 0.99459 0.92322 0.91532 1.20967 0.93696 1.01251 0.99888 1.20268 0.97185 0.93193 0.96913 1.19855 0.87053 0.97870 0.98893 1.19188 0.92552 0.88985 0.89555 1.87699 1.48108 1.42766 1.40320 1.25830 0.89393 0.87348 0.87135 1.87352 1.31665 1.31960 1.71854 0.92666 0.96333 0.93815 0.75450 0.82827 0.83908 0.84385 0.88302 0.84475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.36 13.29 55.43 0.74 -23.62 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.53 -14.02 9.27 -34.44 -0.32 -14.34 16 8 H 0.07 1.68 7.65 -52.48 -0.40 1.28 16 9 C 0.25 6.19 4.53 -5.19 -0.02 6.17 16 10 N -1.10 -22.92 5.99 -11.65 -0.07 -22.99 16 11 S 2.69 52.76 5.68 -107.50 -0.61 52.15 16 12 O -0.98 -18.90 16.96 -57.17 -0.97 -19.87 16 13 O -0.95 -21.90 17.40 -57.17 -0.99 -22.89 16 14 C -0.66 -11.62 5.90 -39.47 -0.23 -11.85 16 15 C -0.02 -0.30 9.54 -39.58 -0.38 -0.68 16 16 C -0.14 -1.61 10.04 -39.58 -0.40 -2.01 16 17 C -0.06 -0.72 10.06 -39.47 -0.40 -1.11 16 18 C 0.01 0.14 7.15 -39.09 -0.28 -0.14 16 19 C 0.15 2.69 6.17 -39.08 -0.24 2.45 16 20 O -0.28 -5.49 8.84 -45.67 -0.40 -5.90 16 21 C 0.21 3.42 8.89 101.05 0.90 4.32 16 22 O -0.31 -4.93 11.40 -45.68 -0.52 -5.45 16 23 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 24 H 0.02 0.47 6.68 -51.93 -0.35 0.12 16 25 H 0.04 1.20 7.55 -51.93 -0.39 0.81 16 26 H 0.41 7.68 8.54 -34.47 -0.29 7.39 16 27 H 0.15 1.85 7.33 -52.48 -0.38 1.46 16 28 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 29 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 30 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 31 H 0.14 1.79 8.14 -51.93 -0.42 1.37 16 LS Contribution 285.88 15.07 4.31 4.31 Total: -1.00 -32.86 285.88 -7.66 -40.51 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -2.64 Total: 3.93 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -1.47 Total: -15.65 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 0.67 Total: -46.61 kcal Atomic # 8 Polarization: -51.22 SS G_CDS: -2.89 Total: -54.11 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 52.76 SS G_CDS: -0.61 Total: 52.15 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.86 -7.66 -40.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337789252.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.400 kcal (2) G-P(sol) polarization free energy of solvation -32.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds