Wall clock time and date at job start Fri Apr 10 2020 17:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48501 * 109.46948 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47174 * 299.99627 * 3 2 1 6 6 H 1.48497 * 109.47378 * 59.99542 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 S 1.65596 * 119.99677 * 165.00101 * 10 9 7 12 12 O 1.42106 * 106.40283 * 178.54151 * 11 10 9 13 13 O 1.42105 * 106.40421 * 311.45913 * 11 10 9 14 14 C 1.76198 * 107.22309 * 65.00118 * 11 10 9 15 15 C 1.38274 * 119.98774 * 114.72121 * 14 11 10 16 16 C 1.38213 * 120.14420 * 179.68952 * 15 14 11 17 17 C 1.38277 * 120.14279 * 0.64063 * 16 15 14 18 18 C 1.38499 * 120.02880 * 359.64655 * 17 16 15 19 19 C 1.38508 * 119.98505 * 295.00228 * 14 11 10 20 20 O 1.36496 * 131.53912 * 0.02562 * 19 14 11 21 21 C 1.43983 * 105.48801 * 162.68443 * 20 19 14 22 22 O 1.36496 * 131.54153 * 180.02562 * 18 17 16 23 23 H 0.96992 * 120.00316 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 25 25 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 26 26 H 0.96996 * 120.00063 * 345.00522 * 10 9 7 27 27 H 1.08006 * 119.92625 * 0.02562 * 15 14 11 28 28 H 1.08001 * 119.92575 * 180.29149 * 16 15 14 29 29 H 1.08001 * 119.98531 * 179.66460 * 17 16 15 30 30 H 1.09005 * 110.57109 * 268.55768 * 21 20 19 31 31 H 1.09002 * 110.70403 * 145.75292 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2034 -3.6126 0.0005 11 16 1.6886 -5.1421 0.3717 12 8 2.8242 -5.9879 0.2518 13 8 0.9255 -5.0301 1.5652 14 6 0.5650 -5.6356 -0.8927 15 6 0.8867 -6.6869 -1.7313 16 6 0.0050 -7.0808 -2.7201 17 6 -1.1969 -6.4169 -2.8835 18 6 -1.5232 -5.3592 -2.0510 19 6 -0.6375 -4.9665 -1.0499 20 8 -1.1828 -3.9139 -0.3734 21 6 -2.2237 -3.4052 -1.2282 22 8 -2.6232 -4.5526 -2.0010 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5570 -0.8897 25 1 0.6243 -2.5567 0.8903 26 1 3.1352 -3.4538 -0.2168 27 1 1.8267 -7.2048 -1.6100 28 1 0.2578 -7.9054 -3.3701 29 1 -1.8816 -6.7234 -3.6604 30 1 -1.8360 -2.6213 -1.8790 31 1 -3.0598 -3.0316 -0.6370 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337789252.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:30:49 Heat of formation + Delta-G solvation = -131.093674 kcal Electronic energy + Delta-G solvation = -20998.789881 eV Core-core repulsion = 17565.661470 eV Total energy + Delta-G solvation = -3433.128411 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.055 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.31455 -38.96913 -38.29957 -37.46848 -36.97604 -36.46269 -34.13771 -32.07697 -31.08887 -28.74011 -26.88146 -24.69325 -24.43727 -24.10068 -20.72947 -19.62079 -19.16783 -19.08331 -18.46460 -17.78116 -17.65488 -17.09122 -16.80076 -16.38365 -15.71360 -15.35138 -15.24665 -14.83828 -14.55308 -14.20295 -14.07847 -13.89035 -13.70419 -13.58227 -13.28738 -13.16066 -13.09718 -12.79368 -12.52362 -12.10646 -12.09053 -11.80450 -11.37564 -10.86739 -10.43072 -10.11945 -9.22685 -8.23769 -6.35542 -0.64121 -0.36095 0.00417 1.42911 1.44934 1.56676 1.64186 2.02352 2.31512 2.34025 2.42162 2.66013 3.10001 3.22135 3.52506 3.74189 3.87843 4.08098 4.11634 4.17752 4.33856 4.61664 4.64523 4.78926 5.04934 5.11647 5.28977 5.34103 5.36754 5.75866 5.94259 5.97614 6.31225 6.77693 7.32989 8.86947 Molecular weight = 285.05amu Principal moments of inertia in cm(-1) A = 0.018145 B = 0.007033 C = 0.005633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.792537 B = 3980.434379 C = 4969.450644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.012 3.988 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.281 1.281 7 C -0.554 4.554 8 H 0.072 0.928 9 C 0.269 3.731 10 N -1.104 6.104 11 S 2.706 3.294 12 O -0.976 6.976 13 O -0.995 6.995 14 C -0.675 4.675 15 C -0.026 4.026 16 C -0.115 4.115 17 C -0.041 4.041 18 C -0.011 4.011 19 C 0.104 3.896 20 O -0.313 6.313 21 C 0.211 3.789 22 O -0.311 6.311 23 H 0.268 0.732 24 H 0.012 0.988 25 H 0.008 0.992 26 H 0.419 0.581 27 H 0.176 0.824 28 H 0.198 0.802 29 H 0.180 0.820 30 H 0.092 0.908 31 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.272 -11.681 -8.994 14.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.188 4.188 3 Si 0.795 3.205 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.207 1.207 7 C -0.593 4.593 8 H 0.090 0.910 9 C 0.144 3.856 10 N -0.866 5.866 11 S 2.797 3.203 12 O -0.966 6.966 13 O -0.986 6.986 14 C -0.764 4.764 15 C -0.045 4.045 16 C -0.134 4.134 17 C -0.059 4.059 18 C -0.056 4.056 19 C 0.057 3.943 20 O -0.228 6.228 21 C 0.100 3.900 22 O -0.227 6.227 23 H 0.077 0.923 24 H 0.030 0.970 25 H 0.026 0.974 26 H 0.255 0.745 27 H 0.193 0.807 28 H 0.215 0.785 29 H 0.197 0.803 30 H 0.110 0.890 31 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.569 -11.983 -8.085 14.682 hybrid contribution -0.072 1.632 -0.217 1.648 sum -2.641 -10.351 -8.302 13.529 Atomic orbital electron populations 1.70048 1.07348 1.28115 1.50024 1.25825 0.95931 1.02835 0.94247 0.85320 0.78978 0.78457 0.77737 1.18794 1.20078 1.20672 1.21676 0.94095 0.91070 1.52504 0.90984 1.18656 0.87436 0.83952 0.95518 1.55291 1.19678 1.23728 1.87911 1.01135 0.73023 0.72219 0.73929 1.93503 1.49469 1.66225 1.87440 1.93540 1.73292 1.86486 1.45235 1.29775 1.09821 1.11575 1.25198 1.21238 1.00924 0.91094 0.91261 1.21609 0.91947 1.01216 0.98601 1.20937 0.97930 0.90887 0.96164 1.20296 0.86738 0.99138 0.99394 1.19529 0.93860 0.89741 0.91157 1.87637 1.49348 1.43913 1.41941 1.25966 0.89489 0.87324 0.87183 1.87316 1.31753 1.31842 1.71826 0.92312 0.96995 0.97404 0.74511 0.80716 0.78486 0.80261 0.88993 0.82345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.34 13.29 21.45 0.28 -51.05 16 2 C 0.01 0.66 5.46 84.65 0.46 1.12 16 3 Si 0.97 42.09 29.54 68.60 2.03 44.12 16 4 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.55 -30.07 9.27 25.60 0.24 -29.84 16 8 H 0.07 3.71 7.65 -2.91 -0.02 3.69 16 9 C 0.27 13.93 4.53 85.63 0.39 14.32 16 10 N -1.10 -47.52 5.99 -190.77 -1.14 -48.66 16 11 S 2.71 108.76 5.68 -56.49 -0.32 108.44 16 12 O -0.98 -37.38 16.96 -128.00 -2.17 -39.55 16 13 O -1.00 -48.18 17.40 -128.00 -2.23 -50.41 16 14 C -0.67 -23.63 5.90 22.34 0.13 -23.50 16 15 C -0.03 -0.66 9.54 22.27 0.21 -0.44 16 16 C -0.12 -2.09 10.04 22.27 0.22 -1.87 16 17 C -0.04 -0.86 10.06 22.34 0.22 -0.64 16 18 C -0.01 -0.33 7.15 22.59 0.16 -0.17 16 19 C 0.10 3.94 6.17 22.59 0.14 4.08 16 20 O -0.31 -13.24 8.84 -76.00 -0.67 -13.91 16 21 C 0.21 7.05 8.89 113.37 1.01 8.06 16 22 O -0.31 -9.76 11.40 -76.00 -0.87 -10.63 16 23 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 24 H 0.01 0.64 6.68 -2.38 -0.02 0.63 16 25 H 0.01 0.47 7.55 -2.39 -0.02 0.45 16 26 H 0.42 16.03 8.54 -96.75 -0.83 15.20 16 27 H 0.18 3.60 7.33 -2.91 -0.02 3.57 16 28 H 0.20 1.51 8.06 -2.91 -0.02 1.49 16 29 H 0.18 2.32 8.06 -2.91 -0.02 2.30 16 30 H 0.09 3.09 8.14 -2.38 -0.02 3.07 16 31 H 0.16 4.35 8.14 -2.39 -0.02 4.33 16 Total: -1.00 -73.51 285.88 -1.54 -75.05 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.36 Total: 15.48 kcal Atomic # 6 Polarization: -32.06 SS G_CDS: 3.19 Total: -28.88 kcal Atomic # 7 Polarization: -98.85 SS G_CDS: -0.86 Total: -99.71 kcal Atomic # 8 Polarization: -108.57 SS G_CDS: -5.94 Total: -114.50 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Atomic # 16 Polarization: 108.76 SS G_CDS: -0.32 Total: 108.44 kcal Total: -73.51 -1.54 -75.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337789252.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.042 kcal (2) G-P(sol) polarization free energy of solvation -73.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds