Wall clock time and date at job start Fri Apr 10 2020 17:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46984 * 2 1 4 4 Cl 1.80303 * 109.47014 * 240.00374 * 2 1 3 5 5 C 1.50700 * 109.47625 * 120.00287 * 2 1 3 6 6 O 1.21292 * 119.99882 * 236.52870 * 5 2 1 7 7 N 1.34771 * 119.99789 * 56.51850 * 5 2 1 8 8 C 1.46500 * 120.00273 * 5.34429 * 7 5 2 9 9 C 1.50690 * 109.47245 * 263.46541 * 8 7 5 10 10 H 1.08004 * 120.00544 * 0.02562 * 9 8 7 11 11 C 1.37879 * 120.00252 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99955 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00302 * 180.02562 * 11 9 8 14 14 H 1.48509 * 109.47066 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47215 * 119.99829 * 13 11 9 16 16 H 1.48499 * 109.47354 * 240.00036 * 13 11 9 17 17 C 1.40031 * 120.00035 * 185.33717 * 7 5 2 18 18 C 1.38857 * 120.04341 * 353.09513 * 17 7 5 19 19 C 1.38114 * 119.95237 * 180.27462 * 18 17 7 20 20 C 1.38476 * 120.04325 * 359.48519 * 19 18 17 21 21 F 1.35101 * 119.95179 * 180.23525 * 20 19 18 22 22 C 1.38469 * 120.09304 * 0.50994 * 20 19 18 23 23 C 1.38118 * 120.04290 * 359.74980 * 22 20 19 24 24 H 1.09000 * 109.47045 * 295.53257 * 1 2 3 25 25 H 1.08995 * 109.46965 * 55.53350 * 1 2 3 26 26 H 1.09000 * 109.46331 * 175.53436 * 1 2 3 27 27 H 1.09003 * 109.47107 * 23.46607 * 8 7 5 28 28 H 1.09003 * 109.47021 * 143.46110 * 8 7 5 29 29 H 0.96997 * 120.00171 * 180.02562 * 12 11 9 30 30 H 1.07998 * 120.01926 * 359.97438 * 18 17 7 31 31 H 1.07996 * 119.97374 * 179.72401 * 19 18 17 32 32 H 1.07998 * 119.97754 * 179.72109 * 22 20 19 33 33 H 1.08000 * 120.01888 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 17 2.1310 -0.8499 -1.4722 5 6 2.0325 -0.7104 1.2304 6 8 2.7809 -0.1409 1.9964 7 7 1.6501 -1.9785 1.4796 8 6 0.8419 -2.7063 0.4981 9 6 -0.6139 -2.6090 0.8749 10 1 -0.9079 -2.0596 1.7570 11 6 -1.5707 -3.2205 0.0929 12 7 -1.2130 -3.8883 -0.9822 13 14 -3.3754 -3.0993 0.5595 14 1 -3.5128 -2.2972 1.8017 15 1 -4.1278 -2.4420 -0.5393 16 1 -3.9206 -4.4618 0.7866 17 6 2.0254 -2.6005 2.6768 18 6 2.9078 -1.9676 3.5422 19 6 3.2810 -2.5853 4.7198 20 6 2.7676 -3.8301 5.0427 21 9 3.1304 -4.4306 6.1973 22 6 1.8875 -4.4629 4.1811 23 6 1.5158 -3.8510 3.0000 24 1 -0.3633 0.4429 0.9273 25 1 -0.3633 0.5816 -0.8472 26 1 -0.3632 -1.0246 -0.0800 27 1 0.9914 -2.2711 -0.4900 28 1 1.1443 -3.7535 0.4833 29 1 -1.8861 -4.3182 -1.5325 30 1 3.3056 -0.9952 3.2923 31 1 3.9708 -2.0953 5.3910 32 1 1.4917 -5.4358 4.4327 33 1 0.8296 -4.3451 2.3281 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038338678.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:30:49 Heat of formation + Delta-G solvation = -54.024315 kcal Electronic energy + Delta-G solvation = -20670.050013 eV Core-core repulsion = 17250.592663 eV Total energy + Delta-G solvation = -3419.457350 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.067 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.79141 -41.98954 -39.31490 -37.57563 -36.79887 -34.69347 -33.43742 -32.06135 -30.26810 -29.33362 -25.48556 -25.31073 -23.96995 -23.00516 -20.79647 -18.87355 -18.71695 -18.39488 -17.87091 -16.74628 -16.61090 -16.47277 -16.37804 -15.99704 -15.35424 -14.97105 -14.59396 -14.53415 -14.11148 -13.93880 -13.72950 -13.49756 -13.42688 -13.05025 -12.86040 -12.71818 -12.35381 -12.25225 -12.05840 -11.92245 -11.75204 -11.01025 -10.74891 -10.55297 -10.25427 -10.04049 -8.80857 -8.18796 -6.27424 0.03254 0.32040 0.76687 1.42937 1.49294 1.56618 1.74136 1.91776 2.41467 2.75691 3.10311 3.16408 3.38341 3.83392 3.90365 3.97596 4.10130 4.33574 4.39259 4.50522 4.82431 4.92443 4.93820 5.09081 5.18751 5.24979 5.27729 5.35066 5.64268 5.65603 5.81388 6.03432 6.10974 6.32655 6.74225 6.91960 7.34727 8.85316 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.013581 B = 0.007573 C = 0.005432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.145317 B = 3696.215995 C = 5153.007821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.005 4.005 3 H 0.149 0.851 4 Cl -0.152 7.152 5 C 0.511 3.489 6 O -0.544 6.544 7 N -0.525 5.525 8 C 0.208 3.792 9 C -0.530 4.530 10 H 0.058 0.942 11 C 0.035 3.965 12 N -0.905 5.905 13 Si 0.945 3.055 14 H -0.270 1.270 15 H -0.277 1.277 16 H -0.283 1.283 17 C 0.134 3.866 18 C -0.160 4.160 19 C -0.130 4.130 20 C 0.054 3.946 21 F -0.146 7.146 22 C -0.129 4.129 23 C -0.122 4.122 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.130 0.870 27 H 0.086 0.914 28 H 0.022 0.978 29 H 0.269 0.731 30 H 0.182 0.818 31 H 0.156 0.844 32 H 0.155 0.845 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.985 3.836 3.832 6.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.051 4.051 3 H 0.167 0.833 4 Cl -0.126 7.126 5 C 0.301 3.699 6 O -0.425 6.425 7 N -0.243 5.243 8 C 0.088 3.912 9 C -0.568 4.568 10 H 0.077 0.923 11 C -0.168 4.168 12 N -0.543 5.543 13 Si 0.771 3.229 14 H -0.195 1.195 15 H -0.202 1.202 16 H -0.209 1.209 17 C 0.038 3.962 18 C -0.180 4.180 19 C -0.149 4.149 20 C 0.034 3.966 21 F -0.125 7.125 22 C -0.148 4.148 23 C -0.142 4.142 24 H 0.089 0.911 25 H 0.101 0.899 26 H 0.148 0.852 27 H 0.103 0.897 28 H 0.040 0.960 29 H 0.079 0.921 30 H 0.198 0.802 31 H 0.174 0.826 32 H 0.172 0.828 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.319 3.959 3.893 7.035 hybrid contribution -0.997 -0.443 0.126 1.098 sum 3.322 3.516 4.020 6.289 Atomic orbital electron populations 1.23125 0.89528 1.10466 1.03059 1.24372 1.00178 0.98310 0.82286 0.83347 1.98713 1.89723 1.81057 1.43113 1.20897 0.79932 0.81418 0.87640 1.90282 1.36438 1.66682 1.49141 1.45958 1.48111 1.12719 1.17491 1.20286 0.89167 0.92538 0.89162 1.21296 0.91122 1.33703 1.10654 0.92343 1.25440 1.02224 0.94427 0.94673 1.70003 1.35441 1.33562 1.15291 0.85688 0.80838 0.77878 0.78470 1.19453 1.20233 1.20946 1.18409 0.96554 0.93737 0.87465 1.22621 0.98073 1.03681 0.93584 1.21285 1.01608 0.93864 0.98120 1.17777 1.00818 0.93776 0.84188 1.91447 1.90743 1.83456 1.46860 1.21081 0.98467 1.01637 0.93590 1.20966 1.01032 0.94409 0.97827 0.91114 0.89856 0.85204 0.89706 0.95970 0.92119 0.80231 0.82623 0.82769 0.84510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -6.80 8.59 71.98 0.62 -6.18 16 2 C -0.01 -0.17 3.50 29.85 0.10 -0.07 16 3 H 0.15 3.93 8.12 -2.39 -0.02 3.92 16 4 Cl -0.15 -5.15 25.67 -2.72 -0.07 -5.22 16 5 C 0.51 19.29 6.61 87.66 0.58 19.87 16 6 O -0.54 -21.22 13.49 -3.07 -0.04 -21.26 16 7 N -0.52 -21.14 2.69 -635.25 -1.71 -22.85 16 8 C 0.21 9.07 3.88 85.63 0.33 9.41 16 9 C -0.53 -24.28 5.45 25.60 0.14 -24.14 16 10 H 0.06 2.76 7.81 -2.91 -0.02 2.73 16 11 C 0.03 1.64 5.34 84.65 0.45 2.10 16 12 N -0.91 -45.35 13.29 21.45 0.28 -45.06 16 13 Si 0.95 38.34 29.54 68.60 2.03 40.36 16 14 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 15 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 16 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 17 C 0.13 5.22 6.46 38.12 0.25 5.46 16 18 C -0.16 -5.71 9.05 22.39 0.20 -5.51 16 19 C -0.13 -3.98 10.02 22.30 0.22 -3.76 16 20 C 0.05 1.69 7.30 22.38 0.16 1.86 16 21 F -0.15 -4.34 17.27 44.97 0.78 -3.57 16 22 C -0.13 -4.08 10.02 22.30 0.22 -3.86 16 23 C -0.12 -4.51 9.00 22.39 0.20 -4.31 16 24 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 25 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.13 5.24 2.78 -2.39 -0.01 5.23 16 27 H 0.09 3.71 3.52 -2.39 -0.01 3.70 16 28 H 0.02 1.06 6.91 -2.39 -0.02 1.04 16 29 H 0.27 12.91 8.31 -92.71 -0.77 12.14 16 30 H 0.18 6.66 4.53 -61.96 -0.28 6.38 16 31 H 0.16 3.87 8.06 -2.91 -0.02 3.84 16 32 H 0.15 4.10 8.06 -2.91 -0.02 4.07 16 33 H 0.14 5.45 6.12 -2.91 -0.02 5.44 16 Total: -1.00 -50.66 288.98 5.65 -45.01 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.89 Total: 21.70 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 3.49 Total: -9.13 kcal Atomic # 7 Polarization: -66.48 SS G_CDS: -1.42 Total: -67.91 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.04 Total: -21.26 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.78 Total: -3.57 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.36 kcal Atomic # 17 Polarization: -5.15 SS G_CDS: -0.07 Total: -5.22 kcal Total: -50.66 5.65 -45.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038338678.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.012 kcal (2) G-P(sol) polarization free energy of solvation -50.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds