Wall clock time and date at job start Fri Apr 10 2020 17:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46949 * 2 1 4 4 C 1.52995 * 109.47086 * 120.00137 * 2 1 3 5 5 C 1.50702 * 109.47096 * 184.99906 * 4 2 1 6 6 C 1.33381 * 125.20592 * 89.99839 * 5 4 2 7 7 C 1.38427 * 114.92374 * 179.97438 * 6 5 4 8 8 C 1.33387 * 114.91991 * 0.25034 * 7 6 5 9 9 S 1.75886 * 109.59194 * 359.63459 * 8 7 6 10 10 N 1.46502 * 109.46870 * 240.00108 * 2 1 3 11 11 C 1.34781 * 119.99672 * 84.99923 * 10 2 1 12 12 O 1.21278 * 120.00178 * 359.97438 * 11 10 2 13 13 C 1.50705 * 119.99654 * 179.97438 * 11 10 2 14 14 S 1.80998 * 109.47026 * 179.97438 * 13 11 10 15 15 C 1.76201 * 99.99927 * 179.97438 * 14 13 11 16 16 H 1.07995 * 119.99966 * 0.02562 * 15 14 13 17 17 C 1.38804 * 119.99917 * 179.97438 * 15 14 13 18 18 N 1.31629 * 119.99925 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00067 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47334 * 89.99312 * 19 17 15 21 21 H 1.48503 * 109.47100 * 210.00085 * 19 17 15 22 22 H 1.48506 * 109.47122 * 329.99539 * 19 17 15 23 23 H 1.08994 * 109.47427 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46860 * 300.00022 * 1 2 3 25 25 H 1.08999 * 109.47292 * 59.99452 * 1 2 3 26 26 H 1.08996 * 109.46856 * 64.99851 * 4 2 1 27 27 H 1.08996 * 109.47050 * 304.99994 * 4 2 1 28 28 H 1.08002 * 122.53744 * 359.94345 * 6 5 4 29 29 H 1.08002 * 122.53759 * 179.97438 * 7 6 5 30 30 H 1.08002 * 125.20431 * 179.75072 * 8 7 6 31 31 H 0.96995 * 120.00309 * 265.00438 * 10 2 1 32 32 H 1.08997 * 109.47012 * 300.00159 * 13 11 10 33 33 H 1.09006 * 109.47078 * 60.00165 * 13 11 10 34 34 H 0.97000 * 119.99983 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 6 4.2188 0.3637 1.9153 7 6 5.5965 0.2499 1.8439 8 6 6.0385 -0.8184 1.1787 9 16 4.6705 -1.7628 0.6039 10 7 2.0183 -0.6906 -1.1962 11 6 2.1470 -0.0182 -2.3572 12 8 1.8581 1.1585 -2.4117 13 6 2.6498 -0.7284 -3.5876 14 16 2.7098 0.4344 -4.9733 15 6 3.3144 -0.6304 -6.2403 16 1 3.5244 -1.6666 -6.0202 17 6 3.5198 -0.1377 -7.5216 18 7 3.9710 -0.9332 -8.4682 19 14 3.1558 1.6545 -7.9025 20 1 4.3740 2.4690 -7.6620 21 1 2.7455 1.7850 -9.3238 22 1 2.0584 2.1342 -7.0245 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.7516 -1.7715 1.2055 27 1 1.6054 -0.2618 2.1369 28 1 3.7290 1.1832 2.4203 29 1 6.2630 0.9739 2.2890 30 1 7.0774 -1.0667 1.0191 31 1 2.2489 -1.6317 -1.1528 32 1 3.6491 -1.1202 -3.3980 33 1 1.9776 -1.5508 -3.8326 34 1 4.1149 -0.5888 -9.3635 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065564286.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:30:54 Heat of formation + Delta-G solvation = -16.259614 kcal Electronic energy + Delta-G solvation = -17459.668485 eV Core-core repulsion = 14610.105618 eV Total energy + Delta-G solvation = -2849.562867 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 285.060 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.55939 -38.05485 -35.89724 -32.42598 -32.22169 -30.35094 -28.60199 -26.57403 -25.59198 -23.42592 -21.68443 -20.46914 -19.27718 -17.91772 -17.29397 -16.46878 -16.10929 -15.59444 -15.00928 -14.91513 -14.17198 -13.83607 -13.68400 -13.36515 -13.19874 -12.79886 -12.77225 -12.76159 -12.37621 -12.05225 -11.77900 -11.67481 -11.24610 -11.13265 -10.99181 -10.85802 -10.57445 -9.83965 -9.46537 -9.04972 -8.97444 -8.73552 -8.56175 -8.47283 -6.89079 -6.27184 -3.98365 0.86192 1.50282 1.86800 2.61184 2.79813 3.02966 3.32643 3.36098 3.51959 3.68867 4.34851 4.45186 4.65465 4.78388 4.85078 4.95473 5.11992 5.19464 5.28108 5.33152 5.43764 5.44823 5.50086 5.60951 5.80728 5.89914 6.00416 6.05546 6.11554 6.17930 6.33939 6.61548 7.64703 7.96036 8.43739 8.54474 9.19219 10.82141 Molecular weight = 285.06amu Principal moments of inertia in cm(-1) A = 0.021187 B = 0.004220 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.270286 B = 6634.141088 C = 7277.776316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.148 3.852 3 H 0.091 0.909 4 C -0.056 4.056 5 C -0.172 4.172 6 C -0.140 4.140 7 C -0.134 4.134 8 C -0.214 4.214 9 S 0.101 5.899 10 N -0.731 5.731 11 C 0.534 3.466 12 O -0.519 6.519 13 C -0.124 4.124 14 S -0.142 6.142 15 C -0.521 4.521 16 H 0.088 0.912 17 C 0.096 3.904 18 N -0.881 5.881 19 Si 0.856 3.144 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.235 1.235 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.138 0.862 29 H 0.138 0.862 30 H 0.163 0.837 31 H 0.396 0.604 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.549 -1.900 23.403 23.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.042 3.958 3 H 0.109 0.891 4 C -0.096 4.096 5 C -0.289 4.289 6 C -0.170 4.170 7 C -0.165 4.165 8 C -0.350 4.350 9 S 0.365 5.635 10 N -0.385 5.385 11 C 0.320 3.680 12 O -0.394 6.394 13 C -0.275 4.275 14 S 0.084 5.916 15 C -0.668 4.668 16 H 0.106 0.894 17 C -0.113 4.113 18 N -0.518 5.518 19 Si 0.681 3.319 20 H -0.192 1.192 21 H -0.200 1.200 22 H -0.159 1.159 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.115 0.885 28 H 0.156 0.844 29 H 0.156 0.844 30 H 0.180 0.820 31 H 0.229 0.771 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.104 -1.298 22.298 22.435 hybrid contribution 0.783 0.102 0.407 0.888 sum -1.321 -1.196 22.705 22.775 Atomic orbital electron populations 1.22189 0.94884 1.02231 1.02885 1.20916 0.93879 0.97775 0.83245 0.89061 1.20513 0.88173 1.02054 0.98847 1.24413 0.99194 1.00062 1.05273 1.20096 0.93681 0.99977 1.03293 1.20151 0.95442 0.98901 1.01988 1.25608 1.02420 1.00706 1.06232 1.84279 0.96687 1.26875 1.55696 1.46050 1.69162 1.13769 1.09501 1.20233 0.76784 0.87188 0.83797 1.90687 1.48541 1.15702 1.84463 1.23284 1.04474 1.03431 0.96301 1.84766 1.87113 1.16944 1.02732 1.22327 1.50287 0.98829 0.95378 0.89405 1.24704 0.93373 0.98234 0.94941 1.69940 1.43474 1.35804 1.02566 0.86742 0.81124 0.84915 0.79116 1.19233 1.19956 1.15922 0.92408 0.91740 0.91407 0.90176 0.88464 0.84440 0.84430 0.81989 0.77059 0.88537 0.88555 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.48 37.16 0.35 -1.26 16 2 C 0.15 1.62 2.56 -67.93 -0.17 1.44 16 3 H 0.09 1.21 7.58 -51.93 -0.39 0.82 16 4 C -0.06 -0.46 5.25 -27.88 -0.15 -0.60 16 5 C -0.17 -1.72 5.49 -36.00 -0.20 -1.92 16 6 C -0.14 -1.40 10.05 -41.21 -0.41 -1.82 16 7 C -0.13 -1.33 10.18 -41.21 -0.42 -1.75 16 8 C -0.21 -2.17 11.23 29.04 0.33 -1.85 16 9 S 0.10 1.04 23.30 -107.50 -2.51 -1.46 16 10 N -0.73 -9.46 4.79 -53.80 -0.26 -9.72 16 11 C 0.53 9.58 7.81 -10.98 -0.09 9.49 16 12 O -0.52 -11.23 15.53 5.56 0.09 -11.14 16 13 C -0.12 -2.45 6.16 36.01 0.22 -2.23 16 14 S -0.14 -3.64 18.55 -107.50 -1.99 -5.63 16 15 C -0.52 -15.13 10.04 30.94 0.31 -14.82 16 16 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 17 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 18 N -0.88 -26.76 13.97 55.49 0.78 -25.99 16 19 Si 0.86 21.97 27.74 -169.99 -4.72 17.26 16 20 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 30 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.40 4.26 8.58 -40.82 -0.35 3.91 16 32 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 33 H 0.10 1.76 8.14 -51.91 -0.42 1.34 16 34 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 322.24 15.07 4.86 4.86 Total: -1.00 -33.98 322.24 -8.63 -42.61 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -4.55 Total: 1.80 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -0.32 Total: -12.58 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.52 Total: -35.71 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.14 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.72 Total: 17.26 kcal Atomic # 16 Polarization: -2.60 SS G_CDS: -4.50 Total: -7.10 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.98 -8.63 -42.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065564286.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.349 kcal (2) G-P(sol) polarization free energy of solvation -33.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds