Wall clock time and date at job start Fri Apr 10 2020 17:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46949 * 2 1 4 4 C 1.52995 * 109.47086 * 120.00137 * 2 1 3 5 5 C 1.50702 * 109.47096 * 184.99906 * 4 2 1 6 6 C 1.33381 * 125.20592 * 89.99839 * 5 4 2 7 7 C 1.38427 * 114.92374 * 179.97438 * 6 5 4 8 8 C 1.33387 * 114.91991 * 0.25034 * 7 6 5 9 9 S 1.75886 * 109.59194 * 359.63459 * 8 7 6 10 10 N 1.46502 * 109.46870 * 240.00108 * 2 1 3 11 11 C 1.34781 * 119.99672 * 84.99923 * 10 2 1 12 12 O 1.21278 * 120.00178 * 359.97438 * 11 10 2 13 13 C 1.50705 * 119.99654 * 179.97438 * 11 10 2 14 14 S 1.80998 * 109.47026 * 179.97438 * 13 11 10 15 15 C 1.76201 * 99.99927 * 179.97438 * 14 13 11 16 16 H 1.07995 * 119.99966 * 0.02562 * 15 14 13 17 17 C 1.38804 * 119.99917 * 179.97438 * 15 14 13 18 18 N 1.31629 * 119.99925 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00067 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47334 * 89.99312 * 19 17 15 21 21 H 1.48503 * 109.47100 * 210.00085 * 19 17 15 22 22 H 1.48506 * 109.47122 * 329.99539 * 19 17 15 23 23 H 1.08994 * 109.47427 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46860 * 300.00022 * 1 2 3 25 25 H 1.08999 * 109.47292 * 59.99452 * 1 2 3 26 26 H 1.08996 * 109.46856 * 64.99851 * 4 2 1 27 27 H 1.08996 * 109.47050 * 304.99994 * 4 2 1 28 28 H 1.08002 * 122.53744 * 359.94345 * 6 5 4 29 29 H 1.08002 * 122.53759 * 179.97438 * 7 6 5 30 30 H 1.08002 * 125.20431 * 179.75072 * 8 7 6 31 31 H 0.96995 * 120.00309 * 265.00438 * 10 2 1 32 32 H 1.08997 * 109.47012 * 300.00159 * 13 11 10 33 33 H 1.09006 * 109.47078 * 60.00165 * 13 11 10 34 34 H 0.97000 * 119.99983 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 6 4.2188 0.3637 1.9153 7 6 5.5965 0.2499 1.8439 8 6 6.0385 -0.8184 1.1787 9 16 4.6705 -1.7628 0.6039 10 7 2.0183 -0.6906 -1.1962 11 6 2.1470 -0.0182 -2.3572 12 8 1.8581 1.1585 -2.4117 13 6 2.6498 -0.7284 -3.5876 14 16 2.7098 0.4344 -4.9733 15 6 3.3144 -0.6304 -6.2403 16 1 3.5244 -1.6666 -6.0202 17 6 3.5198 -0.1377 -7.5216 18 7 3.9710 -0.9332 -8.4682 19 14 3.1558 1.6545 -7.9025 20 1 4.3740 2.4690 -7.6620 21 1 2.7455 1.7850 -9.3238 22 1 2.0584 2.1342 -7.0245 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.7516 -1.7715 1.2055 27 1 1.6054 -0.2618 2.1369 28 1 3.7290 1.1832 2.4203 29 1 6.2630 0.9739 2.2890 30 1 7.0774 -1.0667 1.0191 31 1 2.2489 -1.6317 -1.1528 32 1 3.6491 -1.1202 -3.3980 33 1 1.9776 -1.5508 -3.8326 34 1 4.1149 -0.5888 -9.3635 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065564286.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:30:54 Heat of formation + Delta-G solvation = -38.301809 kcal Electronic energy + Delta-G solvation = -17460.624306 eV Core-core repulsion = 14610.105618 eV Total energy + Delta-G solvation = -2850.518688 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 285.060 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.84111 -38.88480 -36.95177 -34.67712 -33.37291 -31.31961 -29.93198 -27.85218 -27.30169 -24.20884 -22.69711 -21.67333 -20.04965 -19.91423 -18.24793 -17.78345 -17.32330 -17.05050 -16.50362 -16.27137 -15.83290 -15.02236 -14.82219 -14.72821 -14.53688 -13.96683 -13.83697 -13.52025 -13.36091 -13.33621 -13.14648 -13.00845 -12.63921 -12.58723 -12.43140 -11.96083 -11.86611 -11.61216 -11.17558 -10.96085 -10.54277 -10.18322 -9.51744 -9.35143 -8.99777 -8.51925 -6.22568 0.10323 0.75762 0.98680 1.11120 1.30794 1.46417 1.55790 1.59297 1.86592 2.23101 2.27689 2.71950 2.86419 3.69060 3.82594 3.98027 4.15075 4.21587 4.26276 4.41286 4.45569 4.57710 4.68471 4.76617 4.83275 4.87650 5.06750 5.24013 5.32521 5.41718 5.52017 5.63409 5.70496 6.11049 6.45508 6.93335 7.20834 8.60663 Molecular weight = 285.06amu Principal moments of inertia in cm(-1) A = 0.021187 B = 0.004220 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.270286 B = 6634.141088 C = 7277.776316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.146 3.854 3 H 0.068 0.932 4 C -0.047 4.047 5 C -0.178 4.178 6 C -0.151 4.151 7 C -0.143 4.143 8 C -0.227 4.227 9 S 0.078 5.922 10 N -0.708 5.708 11 C 0.539 3.461 12 O -0.560 6.560 13 C -0.113 4.113 14 S -0.173 6.173 15 C -0.530 4.530 16 H 0.061 0.939 17 C 0.047 3.953 18 N -0.917 5.917 19 Si 0.914 3.086 20 H -0.263 1.263 21 H -0.258 1.258 22 H -0.237 1.237 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.035 0.965 26 H 0.098 0.902 27 H 0.125 0.875 28 H 0.154 0.846 29 H 0.154 0.846 30 H 0.175 0.825 31 H 0.409 0.591 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.282 -1.640 25.393 25.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.041 3.959 3 H 0.087 0.913 4 C -0.087 4.087 5 C -0.296 4.296 6 C -0.181 4.181 7 C -0.174 4.174 8 C -0.363 4.363 9 S 0.342 5.658 10 N -0.362 5.362 11 C 0.324 3.676 12 O -0.439 6.439 13 C -0.264 4.264 14 S 0.053 5.947 15 C -0.677 4.677 16 H 0.079 0.921 17 C -0.158 4.158 18 N -0.555 5.555 19 Si 0.735 3.265 20 H -0.188 1.188 21 H -0.182 1.182 22 H -0.161 1.161 23 H 0.093 0.907 24 H 0.109 0.891 25 H 0.054 0.946 26 H 0.117 0.883 27 H 0.143 0.857 28 H 0.172 0.828 29 H 0.172 0.828 30 H 0.192 0.808 31 H 0.245 0.755 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.836 -1.083 24.325 24.514 hybrid contribution 1.041 -0.076 -0.060 1.045 sum -1.795 -1.159 24.265 24.359 Atomic orbital electron populations 1.22142 0.93639 1.03242 1.02621 1.21089 0.94769 0.96808 0.83200 0.91328 1.20548 0.86937 1.03070 0.98101 1.24679 1.00007 0.99789 1.05102 1.20410 0.93896 1.00448 1.03371 1.20465 0.95987 0.99122 1.01798 1.25880 1.03041 1.00874 1.06487 1.84295 0.97573 1.27659 1.56298 1.45901 1.67339 1.14272 1.08669 1.19862 0.76718 0.86563 0.84462 1.90676 1.50769 1.17293 1.85118 1.23284 1.05881 1.02354 0.94857 1.84672 1.86897 1.18717 1.04379 1.22468 1.50187 0.98274 0.96791 0.92050 1.25545 0.93192 1.02218 0.94859 1.70015 1.44516 1.37745 1.03245 0.85880 0.80989 0.79989 0.79594 1.18752 1.18206 1.16072 0.90727 0.89137 0.94572 0.88315 0.85679 0.82835 0.82827 0.80789 0.75481 0.87379 0.86964 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.48 71.98 0.68 -2.04 16 2 C 0.15 2.86 2.56 44.99 0.12 2.98 16 3 H 0.07 1.72 7.58 -2.39 -0.02 1.70 16 4 C -0.05 -0.61 5.25 29.85 0.16 -0.45 16 5 C -0.18 -3.15 5.49 24.59 0.14 -3.02 16 6 C -0.15 -2.70 10.05 21.22 0.21 -2.49 16 7 C -0.14 -2.62 10.18 21.22 0.22 -2.40 16 8 C -0.23 -4.35 11.23 66.72 0.75 -3.60 16 9 S 0.08 1.51 23.30 -56.49 -1.32 0.19 16 10 N -0.71 -17.03 4.79 -442.52 -2.12 -19.15 16 11 C 0.54 18.82 7.81 87.66 0.68 19.51 16 12 O -0.56 -24.10 15.53 -3.02 -0.05 -24.14 16 13 C -0.11 -4.37 6.16 71.24 0.44 -3.93 16 14 S -0.17 -8.89 18.55 -56.49 -1.05 -9.94 16 15 C -0.53 -31.22 10.04 67.96 0.68 -30.54 16 16 H 0.06 3.82 8.03 -2.91 -0.02 3.79 16 17 C 0.05 2.80 5.50 84.86 0.47 3.26 16 18 N -0.92 -56.27 13.97 21.65 0.30 -55.97 16 19 Si 0.91 45.40 27.74 68.60 1.90 47.31 16 20 H -0.26 -12.76 7.11 99.48 0.71 -12.06 16 21 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 22 H -0.24 -11.76 6.74 99.48 0.67 -11.09 16 23 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 29 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 30 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16 31 H 0.41 7.82 8.58 -92.71 -0.80 7.02 16 32 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 33 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 34 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -74.11 322.24 2.48 -71.63 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 0.27 Total: 12.79 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: 4.54 Total: -22.72 kcal Atomic # 7 Polarization: -73.30 SS G_CDS: -1.82 Total: -75.12 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.05 Total: -24.14 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.90 Total: 47.31 kcal Atomic # 16 Polarization: -7.38 SS G_CDS: -2.36 Total: -9.74 kcal Total: -74.11 2.48 -71.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065564286.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.328 kcal (2) G-P(sol) polarization free energy of solvation -74.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds