Wall clock time and date at job start Fri Apr 10 2020 17:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29504 * 126.14597 * 2 1 4 4 N 1.26242 * 116.58371 * 180.02562 * 3 2 1 5 5 C 1.29892 * 117.66405 * 0.02562 * 4 3 2 6 6 N 1.39079 * 125.65786 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99724 * 0.02562 * 6 5 4 8 8 O 1.21583 * 120.00271 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99726 * 179.72728 * 7 6 5 10 10 C 1.46499 * 120.00195 * 180.27548 * 9 7 6 11 11 C 1.50701 * 109.47264 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99900 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99977 * 179.97438 * 11 10 9 14 14 C 1.37090 * 120.00245 * 180.02562 * 13 11 10 15 15 H 1.08008 * 119.99981 * 359.97438 * 14 13 11 16 16 C 1.38944 * 120.00493 * 180.02562 * 14 13 11 17 17 N 1.31415 * 120.00066 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00524 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46954 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47531 * 119.99590 * 18 16 14 21 21 H 1.48494 * 109.47552 * 239.99987 * 18 16 14 22 22 S 1.71313 * 108.68468 * 0.25999 * 5 4 3 23 23 H 1.09000 * 109.47449 * 90.02313 * 1 2 3 24 24 H 1.08999 * 109.47584 * 210.02386 * 1 2 3 25 25 H 1.09003 * 109.47502 * 330.02129 * 1 2 3 26 26 H 0.97000 * 119.99793 * 180.02562 * 6 5 4 27 27 H 0.97000 * 119.99736 * 0.26820 * 9 7 6 28 28 H 1.08998 * 109.46795 * 299.99885 * 10 9 7 29 29 H 1.08997 * 109.47029 * 59.99499 * 10 9 7 30 30 H 0.97003 * 119.99587 * 0.02562 * 13 11 10 31 31 H 0.96994 * 120.00789 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2708 1.0458 0.0000 4 7 3.5157 0.8361 -0.0005 5 6 3.9193 -0.3986 -0.0015 6 7 5.2453 -0.8181 -0.0027 7 6 6.2398 0.0915 -0.0023 8 8 5.9778 1.2788 -0.0015 9 7 7.5248 -0.3150 0.0021 10 6 8.6059 0.6736 0.0085 11 6 9.9355 -0.0358 0.0131 12 8 9.9760 -1.2480 0.0107 13 7 11.0795 0.6767 0.0189 14 6 12.2890 0.0313 0.0225 15 1 12.3251 -1.0482 0.0212 16 6 13.4684 0.7658 0.0290 17 7 13.4245 2.0792 0.0311 18 14 15.1164 -0.1135 0.0347 19 1 14.8940 -1.5818 0.0318 20 1 15.8880 0.2731 -1.1738 21 1 15.8774 0.2689 1.2511 22 16 2.5473 -1.4244 -0.0092 23 1 -0.3634 -0.0004 -1.0276 24 1 -0.3634 -0.8897 0.5142 25 1 -0.3634 0.8902 0.5135 26 1 5.4543 -1.7653 -0.0037 27 1 7.7338 -1.2622 0.0011 28 1 8.5309 1.2998 -0.8805 29 1 8.5236 1.2962 0.8994 30 1 11.0470 1.6461 0.0204 31 1 14.2478 2.5921 0.0352 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353259804.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:31:08 Heat of formation + Delta-G solvation = 10.929630 kcal Electronic energy + Delta-G solvation = -18914.503464 eV Core-core repulsion = 15552.119148 eV Total energy + Delta-G solvation = -3362.384316 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.44959 -40.06315 -38.32855 -35.52855 -34.55122 -33.80877 -32.58759 -31.42889 -28.89499 -27.47214 -25.39011 -24.42672 -22.25028 -20.15800 -19.90554 -19.47885 -18.19773 -17.94425 -17.40106 -16.41247 -15.67725 -15.42312 -15.15154 -14.70205 -14.42716 -14.24162 -14.14992 -13.61099 -13.43358 -13.39875 -12.95229 -12.28285 -12.19655 -11.67311 -11.39774 -11.16731 -10.82980 -10.49714 -10.43982 -10.35568 -9.92526 -9.83024 -9.69275 -9.11238 -8.73904 -8.70268 -8.14934 -6.55408 -3.97807 0.28711 0.29549 0.95707 2.28059 2.44539 3.07268 3.19515 3.20246 3.26486 3.68431 3.74242 4.05919 4.14307 4.63221 4.79908 4.86307 5.04924 5.13060 5.27071 5.51640 5.78312 5.82053 5.89883 5.99816 6.44947 6.50387 7.42391 7.77850 7.87406 8.37339 8.41238 8.58087 9.00096 9.34099 9.81236 10.61354 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.068897 B = 0.002613 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.308881 B =10714.194669 C =11100.034560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.004 4.004 3 N -0.226 5.226 4 N -0.270 5.270 5 C 0.259 3.741 6 N -0.635 5.635 7 C 0.697 3.303 8 O -0.530 6.530 9 N -0.712 5.712 10 C 0.127 3.873 11 C 0.427 3.573 12 O -0.599 6.599 13 N -0.546 5.546 14 C -0.305 4.305 15 H 0.106 0.894 16 C 0.026 3.974 17 N -0.893 5.893 18 Si 0.933 3.067 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.280 1.280 22 S 0.096 5.904 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.423 0.577 27 H 0.409 0.591 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.397 0.603 31 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.912 -7.306 -0.068 23.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.287 4.287 3 N -0.063 5.063 4 N -0.114 5.114 5 C -0.113 4.113 6 N -0.290 5.290 7 C 0.394 3.606 8 O -0.401 6.401 9 N -0.370 5.370 10 C -0.001 4.001 11 C 0.213 3.787 12 O -0.486 6.486 13 N -0.181 5.181 14 C -0.435 4.435 15 H 0.124 0.876 16 C -0.177 4.177 17 N -0.533 5.533 18 Si 0.760 3.240 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.206 1.206 22 S 0.334 5.666 23 H 0.108 0.892 24 H 0.102 0.898 25 H 0.113 0.887 26 H 0.260 0.740 27 H 0.247 0.753 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.231 0.769 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.656 -6.505 -0.075 22.612 hybrid contribution 1.264 -0.712 -0.001 1.450 sum -20.392 -7.216 -0.076 21.631 Atomic orbital electron populations 1.20337 0.83713 1.04580 1.04224 1.29898 1.02858 0.88395 1.07501 1.71443 0.96272 1.25927 1.12609 1.71573 1.05637 1.14352 1.19847 1.25563 0.91186 0.92820 1.01700 1.42037 1.00363 1.10815 1.75749 1.15851 0.80565 0.84980 0.79228 1.91091 1.81908 1.13577 1.53490 1.44716 1.02590 1.11796 1.77945 1.20901 0.85079 0.90387 1.03697 1.19662 0.85075 0.88086 0.85886 1.90491 1.86770 1.13705 1.57618 1.41788 1.04572 1.09428 1.62312 1.19774 0.81614 0.93788 1.48312 0.87574 1.25347 1.00167 0.95521 0.96701 1.69619 1.29589 1.04980 1.49063 0.85745 0.80841 0.79555 0.77868 1.19126 1.20572 1.20579 1.84716 0.98191 1.11533 1.72176 0.89243 0.89792 0.88673 0.73965 0.75287 0.89503 0.89509 0.76936 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.51 36.00 0.38 0.03 16 2 C 0.00 -0.04 7.80 -13.26 -0.10 -0.14 16 3 N -0.23 -3.28 11.65 33.58 0.39 -2.89 16 4 N -0.27 -4.52 9.73 29.97 0.29 -4.23 16 5 C 0.26 3.44 8.14 -87.05 -0.71 2.73 16 6 N -0.64 -7.86 5.41 -17.32 -0.09 -7.95 16 7 C 0.70 11.33 8.53 -86.92 -0.74 10.59 16 8 O -0.53 -10.80 15.02 5.29 0.08 -10.72 16 9 N -0.71 -11.35 5.53 -66.42 -0.37 -11.72 16 10 C 0.13 2.29 6.15 -5.19 -0.03 2.25 16 11 C 0.43 9.51 7.85 -10.99 -0.09 9.43 16 12 O -0.60 -14.79 15.24 5.55 0.08 -14.70 16 13 N -0.55 -13.30 5.29 -10.97 -0.06 -13.36 16 14 C -0.31 -8.17 9.68 -14.94 -0.14 -8.31 16 15 H 0.11 2.95 7.16 -52.48 -0.38 2.58 16 16 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 17 N -0.89 -23.63 13.05 55.50 0.72 -22.91 16 18 Si 0.93 20.28 29.55 -169.99 -5.02 15.26 16 19 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 22 S 0.10 0.82 23.31 -107.50 -2.51 -1.68 16 23 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 25 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.42 3.48 8.83 -40.82 -0.36 3.12 16 27 H 0.41 6.06 7.45 -40.82 -0.30 5.76 16 28 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 29 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 30 H 0.40 9.31 7.90 -40.82 -0.32 8.99 16 31 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 299.63 15.07 4.52 4.52 Total: -1.00 -34.81 299.63 -6.11 -40.91 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -2.61 Total: 12.32 kcal Atomic # 6 Polarization: 18.68 SS G_CDS: -1.53 Total: 17.15 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: 0.89 Total: -63.05 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: 0.16 Total: -25.42 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.51 Total: -1.68 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -34.81 -6.11 -40.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353259804.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.843 kcal (2) G-P(sol) polarization free energy of solvation -34.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds